Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 120.00172 * 2 1 4 4 H 1.07994 * 119.99676 * 142.82579 * 3 2 1 5 5 C 1.38945 * 119.99783 * 322.82711 * 3 2 1 6 6 N 1.31414 * 119.99820 * 158.40659 * 5 3 2 7 7 Si 1.86796 * 120.00242 * 338.40970 * 5 3 2 8 8 H 1.48499 * 109.47321 * 95.72195 * 7 5 3 9 9 H 1.48506 * 109.46908 * 215.72078 * 7 5 3 10 10 H 1.48495 * 109.47336 * 335.71832 * 7 5 3 11 11 C 1.34773 * 119.99708 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00139 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00132 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47075 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47038 * 179.97438 * 14 13 11 16 16 C 1.35903 * 116.99997 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.04130 * 359.71952 * 16 15 14 18 18 C 1.38130 * 119.99239 * 179.74792 * 17 16 15 19 19 C 1.38253 * 120.07767 * 0.53552 * 18 17 16 20 20 C 1.38473 * 120.08980 * 359.74247 * 19 18 17 21 21 F 1.35098 * 119.99964 * 180.02562 * 20 19 18 22 22 C 1.38389 * 120.00206 * 359.97438 * 20 19 18 23 23 H 1.09009 * 109.46691 * 265.13642 * 1 2 3 24 24 H 1.09001 * 109.47166 * 25.12967 * 1 2 3 25 25 H 1.08993 * 109.47321 * 145.13767 * 1 2 3 26 26 H 0.96997 * 120.00372 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.47061 * 60.00112 * 13 11 2 28 28 H 1.08992 * 109.47400 * 299.99796 * 13 11 2 29 29 H 1.09006 * 109.47315 * 60.00448 * 14 13 11 30 30 H 1.08994 * 109.47584 * 300.00088 * 14 13 11 31 31 H 1.08004 * 120.00060 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.95804 * 180.27586 * 18 17 16 33 33 H 1.08007 * 119.95320 * 179.76417 * 19 18 17 34 34 H 1.07996 * 120.04155 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2683 -0.7271 6 7 2.0433 3.4889 -0.4175 7 14 0.4840 1.9867 -2.1445 8 1 -0.9113 2.1586 -1.6661 9 1 0.7617 2.9683 -3.2237 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0018 15 8 1.6649 -4.8728 -0.0012 16 6 2.4050 -6.0126 -0.0017 17 6 3.7909 -5.9410 -0.0086 18 6 4.5422 -7.1001 -0.0038 19 6 3.9152 -8.3323 -0.0033 20 6 2.5325 -8.4076 -0.0022 21 9 1.9217 -9.6126 -0.0012 22 6 1.7763 -7.2486 -0.0011 23 1 -0.3633 -0.0871 1.0241 24 1 -0.3633 0.9304 -0.4364 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7065 4.2436 -0.9252 27 1 0.7583 -2.5298 -0.8903 28 1 0.7590 -2.5303 0.8896 29 1 3.0068 -3.5780 0.8878 30 1 3.0055 -3.5772 -0.8922 31 1 4.2820 -4.9791 -0.0131 32 1 5.6207 -7.0437 -0.0046 33 1 4.5046 -9.2373 -0.0034 34 1 0.6979 -7.3066 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608777529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -100.735807 kcal Electronic energy + Delta-G solvation = -19326.919721 eV Core-core repulsion = 15946.554409 eV Total energy + Delta-G solvation = -3380.365312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.96980 -41.24997 -40.47857 -38.30882 -36.79827 -34.23329 -33.11393 -31.65246 -30.59376 -28.23289 -27.31920 -25.08969 -23.89545 -22.78489 -20.57314 -19.66114 -19.07032 -17.99153 -17.56765 -17.52490 -17.29956 -17.12738 -16.68454 -16.60920 -16.04964 -15.51853 -15.28947 -14.72890 -14.64252 -14.39499 -14.11484 -13.81103 -13.65672 -13.45702 -13.12631 -12.81005 -12.64763 -12.60580 -12.25795 -11.94550 -11.82367 -11.74937 -11.08425 -10.48469 -9.93523 -9.74551 -9.35056 -8.53717 -6.17653 0.08360 0.26038 1.20604 1.33327 1.45972 1.80006 1.88280 2.17023 2.56066 2.79165 2.96183 3.33535 3.66060 3.82438 3.95031 3.96482 4.01132 4.10872 4.24064 4.30540 4.39133 4.47843 4.60215 4.76047 4.80991 4.84260 4.97805 5.06108 5.21331 5.33917 5.49746 5.69591 6.01020 6.25086 6.50438 6.89473 7.25456 7.79763 8.63451 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045275 B = 0.003467 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.298325 B = 8073.523441 C = 8399.911163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.481 5.481 3 C -0.341 4.341 4 H 0.045 0.955 5 C 0.010 3.990 6 N -0.911 5.911 7 Si 0.956 3.044 8 H -0.238 1.238 9 H -0.291 1.291 10 H -0.255 1.255 11 C 0.460 3.540 12 O -0.616 6.616 13 C -0.121 4.121 14 C 0.085 3.915 15 O -0.317 6.317 16 C 0.145 3.855 17 C -0.228 4.228 18 C -0.046 4.046 19 C -0.190 4.190 20 C 0.124 3.876 21 F -0.139 7.139 22 C -0.200 4.200 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.281 0.719 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -21.539 -0.987 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.202 5.202 3 C -0.469 4.469 4 H 0.063 0.937 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.779 3.221 8 H -0.163 1.163 9 H -0.218 1.218 10 H -0.179 1.179 11 C 0.250 3.750 12 O -0.502 6.502 13 C -0.161 4.161 14 C 0.010 3.990 15 O -0.230 6.230 16 C 0.099 3.901 17 C -0.246 4.246 18 C -0.064 4.064 19 C -0.208 4.208 20 C 0.105 3.895 21 F -0.118 7.118 22 C -0.219 4.219 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.694 -21.319 -0.996 21.660 hybrid contribution 0.009 0.627 -0.382 0.735 sum -3.685 -20.692 -1.379 21.063 Atomic orbital electron populations 1.22314 0.79848 1.02996 1.03685 1.43782 1.06244 1.04497 1.65712 1.18683 1.09557 0.87991 1.30629 0.93705 1.26220 0.99874 0.93797 0.99315 1.69871 1.45982 0.99325 1.39640 0.85738 0.79242 0.79009 0.78134 1.16311 1.21848 1.17917 1.20895 0.87810 0.86031 0.80236 1.90541 1.16283 1.88031 1.55313 1.21370 0.98789 0.88774 1.07158 1.22356 0.94076 0.80008 1.02585 1.85943 1.36114 1.12782 1.88209 1.18807 0.90330 0.86077 0.94839 1.21658 0.92722 1.01359 1.08901 1.21143 1.01589 0.90022 0.93675 1.21348 0.92126 1.00510 1.06866 1.17423 0.91272 0.79602 1.01196 1.91499 1.83781 1.42686 1.93823 1.20349 1.01836 0.88924 1.10838 0.90349 0.92593 0.88176 0.90933 0.86288 0.86168 0.91545 0.91587 0.84573 0.81854 0.82229 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.83 8.78 127.77 1.12 2.95 16 2 N -0.48 -22.40 2.59 -658.89 -1.70 -24.10 16 3 C -0.34 -19.76 9.37 84.04 0.79 -18.97 16 4 H 0.04 3.06 7.90 -2.91 -0.02 3.03 16 5 C 0.01 0.57 5.29 84.92 0.45 1.02 16 6 N -0.91 -53.71 13.96 21.66 0.30 -53.41 16 7 Si 0.96 40.66 24.96 68.60 1.71 42.37 16 8 H -0.24 -8.75 6.69 99.48 0.67 -8.08 16 9 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 C 0.46 20.18 7.63 87.66 0.67 20.85 16 12 O -0.62 -32.63 15.85 -3.08 -0.05 -32.68 16 13 C -0.12 -3.59 4.69 29.85 0.14 -3.45 16 14 C 0.09 2.45 4.03 71.98 0.29 2.74 16 15 O -0.32 -8.40 10.14 -92.46 -0.94 -9.33 16 16 C 0.15 3.57 6.69 22.50 0.15 3.72 16 17 C -0.23 -5.08 9.04 22.37 0.20 -4.88 16 18 C -0.05 -0.80 10.04 22.25 0.22 -0.58 16 19 C -0.19 -3.23 10.02 22.33 0.22 -3.00 16 20 C 0.12 2.55 7.30 22.36 0.16 2.72 16 21 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 22 C -0.20 -4.45 9.97 22.41 0.22 -4.23 16 23 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.06 2.05 3.42 -2.39 -0.01 2.04 16 25 H 0.10 2.56 6.64 -2.39 -0.02 2.54 16 26 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.12 2.95 7.41 -2.38 -0.02 2.93 16 28 H 0.12 2.95 8.11 -2.39 -0.02 2.93 16 29 H 0.07 1.99 7.63 -2.38 -0.02 1.97 16 30 H 0.07 1.99 7.61 -2.39 -0.02 1.97 16 31 H 0.14 3.13 6.30 -2.91 -0.02 3.11 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -72.01 294.14 5.83 -66.18 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.08 Total: 14.21 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.64 Total: -1.11 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.40 Total: -77.51 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.99 Total: -42.01 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.71 Total: 42.37 kcal Total: -72.01 5.83 -66.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.551 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds