Wall clock time and date at job start Mon Mar 30 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47015 * 2 1 4 4 C 1.46491 * 119.99965 * 277.52272 * 3 2 1 5 5 C 1.50695 * 109.47466 * 270.00225 * 4 3 2 6 6 H 1.08001 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99982 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47354 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47268 * 120.00137 * 9 7 5 12 12 H 1.48500 * 109.47118 * 240.00113 * 9 7 5 13 13 C 1.34773 * 119.99527 * 97.52810 * 3 2 1 14 14 O 1.21584 * 119.99698 * 185.78203 * 13 3 2 15 15 C 1.47605 * 120.00414 * 5.78107 * 13 3 2 16 16 C 1.39716 * 120.08011 * 314.16486 * 15 13 3 17 17 C 1.37731 * 119.95017 * 179.74175 * 16 15 13 18 18 C 1.38931 * 120.11540 * 0.53602 * 17 16 15 19 19 O 1.35765 * 119.91996 * 179.76295 * 18 17 16 20 20 C 1.39158 * 120.16488 * 359.48703 * 18 17 16 21 21 F 1.35103 * 119.98063 * 180.25388 * 20 18 17 22 22 C 1.37904 * 120.04524 * 0.23282 * 20 18 17 23 23 H 1.08999 * 109.47330 * 309.53258 * 1 2 3 24 24 H 1.09001 * 109.47057 * 69.52792 * 1 2 3 25 25 H 1.09001 * 109.47444 * 189.53206 * 1 2 3 26 26 H 1.09001 * 109.47143 * 239.99979 * 2 1 3 27 27 H 1.09001 * 109.46836 * 120.00070 * 2 1 3 28 28 H 1.09002 * 109.47078 * 30.00615 * 4 3 2 29 29 H 1.09005 * 109.46914 * 149.99987 * 4 3 2 30 30 H 0.97001 * 119.99453 * 179.97438 * 8 7 5 31 31 H 1.07995 * 120.02531 * 0.02562 * 16 15 13 32 32 H 1.08007 * 119.94332 * 180.27699 * 17 16 15 33 33 H 0.96701 * 114.00020 * 269.72947 * 19 18 17 34 34 H 1.07997 * 120.05704 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1058 2.1272 -1.2577 5 6 3.4638 1.9135 -1.8751 6 1 4.1893 1.2852 -1.3799 7 6 3.7804 2.5210 -3.0717 8 7 2.8975 3.2873 -3.6740 9 14 5.4640 2.2566 -3.8366 10 1 6.2673 1.3594 -2.9676 11 1 5.3070 1.6365 -5.1768 12 1 6.1561 3.5633 -3.9739 13 6 2.3871 1.9656 1.1572 14 8 2.6920 3.1424 1.1738 15 6 2.4208 1.1768 2.4043 16 6 1.3554 0.3329 2.7282 17 6 1.3921 -0.4059 3.8900 18 6 2.4816 -0.3051 4.7461 19 8 2.5114 -1.0315 5.8927 20 6 3.5451 0.5343 4.4286 21 9 4.6051 0.6256 5.2613 22 6 3.5181 1.2728 3.2642 23 1 -0.3634 0.6541 0.7926 24 1 -0.3633 0.3594 -0.9628 25 1 -0.3634 -1.0135 0.1702 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3354 1.7748 -1.9435 29 1 1.9591 3.1893 -1.0612 30 1 3.1204 3.7149 -4.5157 31 1 0.5059 0.2565 2.0658 32 1 0.5705 -1.0617 4.1381 33 1 2.1252 -0.5791 6.6551 34 1 4.3435 1.9240 3.0174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613448453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:48 Heat of formation + Delta-G solvation = -88.155557 kcal Electronic energy + Delta-G solvation = -20139.877979 eV Core-core repulsion = 16760.058188 eV Total energy + Delta-G solvation = -3379.819791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.94448 -40.20740 -38.71995 -36.57225 -35.53442 -32.87932 -30.99473 -30.36990 -29.90172 -27.15046 -24.08065 -23.11856 -22.93296 -22.21579 -19.22254 -18.82099 -17.36188 -16.81356 -16.46116 -16.25748 -15.80505 -15.62619 -15.08609 -14.49924 -14.27978 -14.10612 -13.88160 -13.52078 -13.16761 -12.61295 -12.34678 -12.27759 -12.01878 -11.88130 -11.62203 -11.25306 -10.92720 -10.82474 -10.70738 -10.60584 -10.18163 -9.68138 -9.23620 -9.07745 -8.63148 -8.47395 -7.77500 -6.08897 -4.13948 0.69499 1.02342 2.98825 3.27782 3.35479 3.38509 3.49724 3.71625 3.91460 4.19709 4.41152 4.66680 4.71418 4.97471 5.13281 5.25862 5.27269 5.50120 5.53766 5.59945 5.79208 5.84024 5.95924 5.97592 6.17717 6.20745 6.42589 6.52040 6.99169 7.31947 7.37502 7.44869 7.87333 8.17320 8.27288 8.79391 8.95661 9.51500 10.99246 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.005184 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.457672 B = 5400.024866 C = 6018.931153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.585 5.585 4 C 0.245 3.755 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.547 3.453 14 O -0.532 6.532 15 C -0.091 4.091 16 C -0.100 4.100 17 C -0.124 4.124 18 C 0.081 3.919 19 O -0.488 6.488 20 C 0.068 3.932 21 F -0.132 7.132 22 C -0.093 4.093 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.392 0.608 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 -9.242 14.668 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.332 3.668 14 O -0.409 6.409 15 C -0.094 4.094 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.035 3.965 19 O -0.299 6.299 20 C 0.049 3.951 21 F -0.111 7.111 22 C -0.112 4.112 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.248 0.752 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.223 -8.918 14.144 17.517 hybrid contribution 0.937 0.175 -0.049 0.955 sum -4.285 -8.743 14.095 17.131 Atomic orbital electron populations 1.22354 0.96596 1.01499 1.02849 1.21708 0.93710 0.84264 1.03341 1.48200 1.61586 1.13414 1.08380 1.19354 0.97217 0.92864 0.77980 1.21466 0.99445 1.30064 1.05867 0.92328 1.24928 0.97382 0.94816 0.96866 1.69939 1.34510 1.31239 1.17518 0.86439 0.83958 0.78098 0.78922 1.19770 1.20910 1.20821 1.17998 0.78815 0.86927 0.83011 1.90790 1.48811 1.15552 1.85777 1.20147 0.94868 0.98009 0.96388 1.21883 0.99132 0.94122 0.96693 1.21231 0.97615 1.00597 0.94764 1.18580 0.93682 0.94077 0.90118 1.84815 1.84037 1.43043 1.17967 1.17913 0.86397 0.99744 0.91090 1.91502 1.54119 1.95152 1.70323 1.21145 0.99614 0.98684 0.91777 0.92394 0.91474 0.91736 0.89852 0.90695 0.94616 0.93525 0.92701 0.82925 0.83967 0.75193 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.14 37.16 0.34 -1.82 16 2 C 0.09 1.45 5.60 -4.04 -0.02 1.43 16 3 N -0.59 -12.09 2.46 -176.27 -0.43 -12.52 16 4 C 0.24 6.24 5.22 -5.20 -0.03 6.21 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.55 11.41 7.26 -12.44 -0.09 11.32 16 14 O -0.53 -13.38 16.54 5.29 0.09 -13.29 16 15 C -0.09 -1.46 5.07 -104.96 -0.53 -2.00 16 16 C -0.10 -1.24 7.40 -39.21 -0.29 -1.53 16 17 C -0.12 -1.30 9.97 -39.51 -0.39 -1.69 16 18 C 0.08 0.96 6.72 -38.98 -0.26 0.70 16 19 O -0.49 -4.93 13.35 -19.00 -0.25 -5.18 16 20 C 0.07 0.95 7.30 -39.36 -0.29 0.66 16 21 F -0.13 -1.89 17.10 2.25 0.04 -1.86 16 22 C -0.09 -1.44 9.66 -39.14 -0.38 -1.81 16 23 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 27 H 0.07 1.02 5.10 -51.93 -0.26 0.75 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 31 H 0.15 1.69 3.70 -52.49 -0.19 1.49 16 32 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.39 2.00 9.06 45.56 0.41 2.41 16 34 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -33.54 298.04 -5.55 -39.09 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -2.83 Total: 0.03 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.36 Total: -1.99 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.30 Total: -37.94 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.17 Total: -18.47 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.54 -5.55 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613448453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.065 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds