Wall clock time and date at job start Mon Mar 30 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47015 * 2 1 4 4 C 1.46491 * 119.99965 * 277.52272 * 3 2 1 5 5 C 1.50695 * 109.47466 * 270.00225 * 4 3 2 6 6 H 1.08001 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99982 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47354 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47268 * 120.00137 * 9 7 5 12 12 H 1.48500 * 109.47118 * 240.00113 * 9 7 5 13 13 C 1.34773 * 119.99527 * 97.52810 * 3 2 1 14 14 O 1.21584 * 119.99698 * 185.78203 * 13 3 2 15 15 C 1.47605 * 120.00414 * 5.78107 * 13 3 2 16 16 C 1.39716 * 120.08011 * 314.16486 * 15 13 3 17 17 C 1.37731 * 119.95017 * 179.74175 * 16 15 13 18 18 C 1.38931 * 120.11540 * 0.53602 * 17 16 15 19 19 O 1.35765 * 119.91996 * 179.76295 * 18 17 16 20 20 C 1.39158 * 120.16488 * 359.48703 * 18 17 16 21 21 F 1.35103 * 119.98063 * 180.25388 * 20 18 17 22 22 C 1.37904 * 120.04524 * 0.23282 * 20 18 17 23 23 H 1.08999 * 109.47330 * 309.53258 * 1 2 3 24 24 H 1.09001 * 109.47057 * 69.52792 * 1 2 3 25 25 H 1.09001 * 109.47444 * 189.53206 * 1 2 3 26 26 H 1.09001 * 109.47143 * 239.99979 * 2 1 3 27 27 H 1.09001 * 109.46836 * 120.00070 * 2 1 3 28 28 H 1.09002 * 109.47078 * 30.00615 * 4 3 2 29 29 H 1.09005 * 109.46914 * 149.99987 * 4 3 2 30 30 H 0.97001 * 119.99453 * 179.97438 * 8 7 5 31 31 H 1.07995 * 120.02531 * 0.02562 * 16 15 13 32 32 H 1.08007 * 119.94332 * 180.27699 * 17 16 15 33 33 H 0.96701 * 114.00020 * 269.72947 * 19 18 17 34 34 H 1.07997 * 120.05704 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1058 2.1272 -1.2577 5 6 3.4638 1.9135 -1.8751 6 1 4.1893 1.2852 -1.3799 7 6 3.7804 2.5210 -3.0717 8 7 2.8975 3.2873 -3.6740 9 14 5.4640 2.2566 -3.8366 10 1 6.2673 1.3594 -2.9676 11 1 5.3070 1.6365 -5.1768 12 1 6.1561 3.5633 -3.9739 13 6 2.3871 1.9656 1.1572 14 8 2.6920 3.1424 1.1738 15 6 2.4208 1.1768 2.4043 16 6 1.3554 0.3329 2.7282 17 6 1.3921 -0.4059 3.8900 18 6 2.4816 -0.3051 4.7461 19 8 2.5114 -1.0315 5.8927 20 6 3.5451 0.5343 4.4286 21 9 4.6051 0.6256 5.2613 22 6 3.5181 1.2728 3.2642 23 1 -0.3634 0.6541 0.7926 24 1 -0.3633 0.3594 -0.9628 25 1 -0.3634 -1.0135 0.1702 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3354 1.7748 -1.9435 29 1 1.9591 3.1893 -1.0612 30 1 3.1204 3.7149 -4.5157 31 1 0.5059 0.2565 2.0658 32 1 0.5705 -1.0617 4.1381 33 1 2.1252 -0.5791 6.6551 34 1 4.3435 1.9240 3.0174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613448453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:47 Heat of formation + Delta-G solvation = -112.215316 kcal Electronic energy + Delta-G solvation = -20140.921288 eV Core-core repulsion = 16760.058188 eV Total energy + Delta-G solvation = -3380.863101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02503 -41.51247 -39.92364 -37.63306 -37.15571 -34.93707 -32.20930 -31.69227 -31.07285 -29.00489 -25.68292 -24.53247 -23.96336 -23.63212 -20.64379 -19.70611 -18.81842 -18.54257 -17.94189 -17.34277 -17.16505 -16.99869 -16.47956 -16.02056 -15.85146 -15.14495 -15.04923 -14.85497 -14.53973 -14.25866 -13.66923 -13.47297 -13.30873 -13.25030 -13.06471 -13.03187 -12.67186 -12.46412 -12.18079 -11.92796 -11.71817 -11.65483 -10.87933 -10.66595 -10.12976 -9.71316 -9.51927 -8.25213 -6.39830 -0.37235 -0.00104 1.35267 1.37543 1.48941 1.63462 2.10955 2.37922 2.45823 2.85749 3.04887 3.24369 3.43959 3.67559 3.92604 4.06786 4.12807 4.37182 4.52601 4.54486 4.72054 4.89447 4.93945 4.96683 4.98786 5.06027 5.14807 5.21283 5.41618 5.53314 5.56249 5.79551 6.02854 6.61665 6.68269 6.70163 7.19147 7.35043 8.82280 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.005184 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.457672 B = 5400.024866 C = 6018.931153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.589 5.589 4 C 0.260 3.740 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.269 1.269 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.540 3.460 14 O -0.593 6.593 15 C -0.114 4.114 16 C -0.085 4.085 17 C -0.102 4.102 18 C 0.105 3.895 19 O -0.491 6.491 20 C 0.055 3.945 21 F -0.139 7.139 22 C -0.106 4.106 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.031 0.969 29 H 0.001 0.999 30 H 0.268 0.732 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.418 0.582 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -12.234 16.222 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 N -0.319 5.319 4 C 0.139 3.861 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.329 3.671 14 O -0.475 6.475 15 C -0.117 4.117 16 C -0.103 4.103 17 C -0.120 4.120 18 C 0.059 3.941 19 O -0.305 6.305 20 C 0.035 3.965 21 F -0.118 7.118 22 C -0.126 4.126 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.188 0.812 32 H 0.206 0.794 33 H 0.279 0.721 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.221 -11.958 15.730 20.715 hybrid contribution 1.199 1.053 -0.407 1.647 sum -5.022 -10.904 15.323 19.466 Atomic orbital electron populations 1.22315 0.93678 1.04334 1.02230 1.22065 0.96066 0.81222 1.04176 1.48202 1.61676 1.15169 1.06834 1.18803 0.96215 0.91048 0.80021 1.21723 1.00301 1.30198 1.06330 0.93058 1.25813 1.01314 0.94341 0.97342 1.70046 1.36497 1.31911 1.18019 0.85387 0.79026 0.78018 0.78495 1.19379 1.19195 1.20704 1.18756 0.77253 0.86626 0.84445 1.90737 1.51379 1.18383 1.86960 1.19701 0.97195 1.00103 0.94708 1.22034 0.97924 0.92736 0.97564 1.21599 0.97946 0.99639 0.92773 1.18655 0.92645 0.92035 0.90804 1.84759 1.84450 1.42975 1.18341 1.17998 0.87241 1.00645 0.90598 1.91482 1.54680 1.95304 1.70289 1.20985 0.99305 0.99415 0.92931 0.91609 0.93317 0.87309 0.90813 0.88056 0.95053 0.98077 0.92295 0.81191 0.79366 0.72123 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.14 71.98 0.66 -3.07 16 2 C 0.09 2.59 5.60 86.38 0.48 3.07 16 3 N -0.59 -25.17 2.46 -829.85 -2.04 -27.21 16 4 C 0.26 14.01 5.22 85.63 0.45 14.46 16 5 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 9 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 C 0.54 23.59 7.26 86.72 0.63 24.22 16 14 O -0.59 -32.09 16.54 -3.98 -0.07 -32.16 16 15 C -0.11 -3.65 5.07 -20.09 -0.10 -3.75 16 16 C -0.08 -1.82 7.40 22.51 0.17 -1.65 16 17 C -0.10 -1.60 9.97 22.32 0.22 -1.38 16 18 C 0.10 2.06 6.72 22.66 0.15 2.21 16 19 O -0.49 -7.55 13.35 -90.91 -1.21 -8.77 16 20 C 0.05 1.45 7.30 22.41 0.16 1.61 16 21 F -0.14 -3.86 17.10 44.97 0.77 -3.09 16 22 C -0.11 -3.37 9.66 22.55 0.22 -3.15 16 23 H 0.07 1.37 6.32 -2.39 -0.02 1.36 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 27 H 0.10 2.49 5.10 -2.39 -0.01 2.48 16 28 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 29 H 0.00 0.07 7.35 -2.38 -0.02 0.05 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.17 3.06 3.70 -2.91 -0.01 3.05 16 32 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.42 2.15 9.06 -74.06 -0.67 1.48 16 34 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -78.10 298.04 3.98 -74.13 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.48 Total: 3.19 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 3.74 Total: 2.20 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.76 Total: -82.64 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.28 Total: -40.92 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.77 Total: -3.09 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -78.10 3.98 -74.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613448453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.088 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds