Wall clock time and date at job start Mon Mar 30 2020 00:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47677 * 2 1 4 4 C 1.50702 * 109.47200 * 239.99777 * 2 1 3 5 5 H 1.07996 * 120.00461 * 240.00538 * 4 2 1 6 6 C 1.37884 * 119.99613 * 60.00561 * 4 2 1 7 7 N 1.31517 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99768 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46829 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47400 * 299.99549 * 8 6 4 11 11 H 1.48501 * 109.47167 * 59.99864 * 8 6 4 12 12 N 1.46500 * 109.47218 * 120.00183 * 2 1 3 13 13 C 1.46504 * 120.00126 * 59.99680 * 12 2 1 14 14 C 1.34775 * 120.00178 * 239.99818 * 12 2 1 15 15 O 1.21582 * 119.99969 * 6.95044 * 14 12 2 16 16 C 1.47610 * 120.00006 * 186.94316 * 14 12 2 17 17 C 1.39721 * 120.07668 * 20.42904 * 16 14 12 18 18 C 1.37740 * 119.94767 * 179.76236 * 17 16 14 19 19 C 1.38926 * 120.11794 * 0.48018 * 18 17 16 20 20 O 1.35757 * 119.92390 * 179.74611 * 19 18 17 21 21 C 1.39170 * 120.15863 * 359.76963 * 19 18 17 22 22 F 1.35103 * 119.97450 * 179.97438 * 21 19 18 23 23 C 1.37895 * 120.05102 * 359.97438 * 21 19 18 24 24 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00312 * 1 2 3 26 26 H 1.09001 * 109.46780 * 59.99557 * 1 2 3 27 27 H 0.96996 * 119.99975 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47178 * 86.41744 * 13 12 2 29 29 H 1.08996 * 109.47490 * 206.42756 * 13 12 2 30 30 H 1.09013 * 109.46760 * 326.42518 * 13 12 2 31 31 H 1.08002 * 120.02765 * 359.96525 * 17 16 14 32 32 H 1.07999 * 119.94281 * 180.23217 * 18 17 16 33 33 H 0.96695 * 114.00237 * 270.03034 * 20 19 18 34 34 H 1.08000 * 120.06091 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -0.4205 -5.2204 10 1 3.8064 -1.1210 -4.0082 11 1 1.8257 -2.5202 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 2.9834 1.1587 1.9590 16 6 3.4109 -0.7685 3.2059 17 6 3.5648 -2.1555 3.1366 18 6 4.1461 -2.8360 4.1837 19 6 4.5705 -2.1470 5.3129 20 8 5.1382 -2.8224 6.3447 21 6 4.4148 -0.7662 5.3891 22 9 4.8284 -0.0999 6.4893 23 6 3.8386 -0.0774 4.3426 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7083 1.1610 -3.4843 28 1 2.3803 -2.7378 0.9180 29 1 1.6858 -2.3014 2.4977 30 1 0.6635 -2.2842 1.0406 31 1 3.2313 -2.6932 2.2614 32 1 4.2684 -3.9076 4.1284 33 1 4.5063 -3.1281 7.0097 34 1 3.7173 0.9941 4.4018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613505537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:50 Heat of formation + Delta-G solvation = -72.181749 kcal Electronic energy + Delta-G solvation = -20129.907143 eV Core-core repulsion = 16750.780029 eV Total energy + Delta-G solvation = -3379.127115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.95102 -40.22892 -38.75003 -36.61433 -35.56839 -33.06691 -30.91860 -30.54241 -28.70168 -26.62983 -25.28022 -23.85550 -22.80206 -21.22553 -19.20490 -18.72044 -17.51157 -16.82853 -16.40175 -16.21460 -15.54080 -15.34674 -15.13315 -14.62629 -14.48716 -14.07719 -13.68761 -13.23859 -13.08518 -12.62202 -12.33502 -12.20501 -12.10620 -11.60414 -11.20453 -11.09648 -10.90035 -10.76018 -10.55426 -10.32184 -10.20180 -9.27622 -9.19183 -9.09414 -8.67427 -8.48205 -7.71457 -6.12399 -4.21355 0.63372 1.03326 2.93050 3.24810 3.30562 3.31720 3.62375 3.80830 3.85117 4.20161 4.35347 4.66754 4.78307 4.99726 5.14248 5.18950 5.46554 5.59712 5.78461 5.83730 5.89102 5.98159 6.15590 6.19166 6.51913 6.70966 6.76420 6.98583 7.31087 7.32701 7.43372 7.64583 7.94683 8.11021 8.39014 8.72845 8.90092 9.45322 10.92842 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.004640 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.283257 B = 6033.042426 C = 6365.780694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.071 3.929 14 C 0.544 3.456 15 O -0.543 6.543 16 C -0.099 4.099 17 C -0.103 4.103 18 C -0.128 4.128 19 C 0.086 3.914 20 O -0.489 6.489 21 C 0.062 3.938 22 F -0.133 7.133 23 C -0.087 4.087 24 H 0.031 0.969 25 H 0.013 0.987 26 H 0.095 0.905 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.392 0.608 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -9.178 13.820 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.072 4.072 14 C 0.331 3.669 15 O -0.423 6.423 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.146 4.146 19 C 0.040 3.960 20 O -0.299 6.299 21 C 0.043 3.957 22 F -0.112 7.112 23 C -0.107 4.107 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.248 0.752 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.658 -8.286 13.305 15.898 hybrid contribution 0.016 -0.552 -0.370 0.665 sum 2.674 -8.839 12.935 15.893 Atomic orbital electron populations 1.22094 0.98013 0.99458 1.01038 1.19023 0.91132 0.94553 0.79466 0.91697 1.21253 1.32195 1.13164 0.90181 0.92246 1.24892 0.94861 0.94950 0.98984 1.69866 1.36063 1.22499 1.23999 0.86529 0.79255 0.79546 0.81903 1.21135 1.20210 1.20198 1.48158 1.48174 1.11697 1.23222 1.22200 1.01759 0.83428 0.99835 1.18027 0.79895 0.86870 0.82098 1.90755 1.62086 1.14396 1.75031 1.20145 1.00963 0.93820 0.95297 1.22436 0.96122 0.93603 0.99946 1.21301 0.98979 1.01032 0.93295 1.18650 0.98318 0.88435 0.90612 1.84816 1.36427 1.74192 1.34455 1.17920 1.02404 0.89909 0.85505 1.91498 1.88216 1.80456 1.51020 1.21187 0.96685 1.01680 0.91133 0.95006 0.96815 0.88676 0.92528 0.92325 0.91420 0.90745 0.81682 0.83928 0.75178 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.94 37.16 0.33 -3.09 16 2 C 0.26 6.41 2.63 -69.08 -0.18 6.23 16 3 H 0.07 1.88 6.92 -51.93 -0.36 1.52 16 4 C -0.53 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.51 7.55 -52.49 -0.40 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.58 -11.97 2.75 -176.46 -0.49 -12.46 16 13 C 0.07 1.09 7.91 59.85 0.47 1.56 16 14 C 0.54 11.23 7.51 -12.44 -0.09 11.13 16 15 O -0.54 -13.33 15.88 5.29 0.08 -13.25 16 16 C -0.10 -1.58 5.57 -104.96 -0.58 -2.17 16 17 C -0.10 -1.31 7.60 -39.21 -0.30 -1.61 16 18 C -0.13 -1.37 9.97 -39.51 -0.39 -1.76 16 19 C 0.09 1.01 6.72 -38.98 -0.26 0.75 16 20 O -0.49 -4.96 13.35 -18.98 -0.25 -5.21 16 21 C 0.06 0.85 7.30 -39.36 -0.29 0.56 16 22 F -0.13 -1.86 17.10 2.25 0.04 -1.82 16 23 C -0.09 -1.31 9.56 -39.15 -0.37 -1.69 16 24 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.06 0.83 6.88 -51.93 -0.36 0.48 16 29 H 0.07 0.83 5.26 -51.93 -0.27 0.55 16 30 H 0.07 1.15 6.44 -51.92 -0.33 0.81 16 31 H 0.17 1.92 4.02 -52.49 -0.21 1.71 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.39 1.96 9.06 45.56 0.41 2.37 16 34 H 0.15 2.30 7.79 -52.49 -0.41 1.89 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -31.73 289.81 -5.26 -37.00 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.57 Total: 2.35 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.05 Total: -2.55 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.14 Total: -36.39 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.17 Total: -18.46 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.73 -5.26 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613505537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.186 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds