Wall clock time and date at job start Mon Mar 30 2020 00:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47677 * 2 1 4 4 C 1.50702 * 109.47200 * 239.99777 * 2 1 3 5 5 H 1.07996 * 120.00461 * 240.00538 * 4 2 1 6 6 C 1.37884 * 119.99613 * 60.00561 * 4 2 1 7 7 N 1.31517 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99768 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46829 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47400 * 299.99549 * 8 6 4 11 11 H 1.48501 * 109.47167 * 59.99864 * 8 6 4 12 12 N 1.46500 * 109.47218 * 120.00183 * 2 1 3 13 13 C 1.46504 * 120.00126 * 59.99680 * 12 2 1 14 14 C 1.34775 * 120.00178 * 239.99818 * 12 2 1 15 15 O 1.21582 * 119.99969 * 6.95044 * 14 12 2 16 16 C 1.47610 * 120.00006 * 186.94316 * 14 12 2 17 17 C 1.39721 * 120.07668 * 20.42904 * 16 14 12 18 18 C 1.37740 * 119.94767 * 179.76236 * 17 16 14 19 19 C 1.38926 * 120.11794 * 0.48018 * 18 17 16 20 20 O 1.35757 * 119.92390 * 179.74611 * 19 18 17 21 21 C 1.39170 * 120.15863 * 359.76963 * 19 18 17 22 22 F 1.35103 * 119.97450 * 179.97438 * 21 19 18 23 23 C 1.37895 * 120.05102 * 359.97438 * 21 19 18 24 24 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00312 * 1 2 3 26 26 H 1.09001 * 109.46780 * 59.99557 * 1 2 3 27 27 H 0.96996 * 119.99975 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47178 * 86.41744 * 13 12 2 29 29 H 1.08996 * 109.47490 * 206.42756 * 13 12 2 30 30 H 1.09013 * 109.46760 * 326.42518 * 13 12 2 31 31 H 1.08002 * 120.02765 * 359.96525 * 17 16 14 32 32 H 1.07999 * 119.94281 * 180.23217 * 18 17 16 33 33 H 0.96695 * 114.00237 * 270.03034 * 20 19 18 34 34 H 1.08000 * 120.06091 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -0.4205 -5.2204 10 1 3.8064 -1.1210 -4.0082 11 1 1.8257 -2.5202 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 2.9834 1.1587 1.9590 16 6 3.4109 -0.7685 3.2059 17 6 3.5648 -2.1555 3.1366 18 6 4.1461 -2.8360 4.1837 19 6 4.5705 -2.1470 5.3129 20 8 5.1382 -2.8224 6.3447 21 6 4.4148 -0.7662 5.3891 22 9 4.8284 -0.0999 6.4893 23 6 3.8386 -0.0774 4.3426 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7083 1.1610 -3.4843 28 1 2.3803 -2.7378 0.9180 29 1 1.6858 -2.3014 2.4977 30 1 0.6635 -2.2842 1.0406 31 1 3.2313 -2.6932 2.2614 32 1 4.2684 -3.9076 4.1284 33 1 4.5063 -3.1281 7.0097 34 1 3.7173 0.9941 4.4018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613505537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:50 Heat of formation + Delta-G solvation = -94.697615 kcal Electronic energy + Delta-G solvation = -20130.883505 eV Core-core repulsion = 16750.780029 eV Total energy + Delta-G solvation = -3380.103476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.01107 -41.52335 -39.94178 -37.66969 -37.28673 -34.90148 -32.23960 -31.82656 -30.15175 -28.00140 -27.29400 -25.12627 -23.84201 -22.79260 -20.69458 -19.65063 -18.88269 -18.36316 -17.87924 -17.31717 -17.02099 -16.69279 -16.45505 -16.14460 -15.91771 -15.02400 -14.99962 -14.67041 -14.48972 -14.27584 -13.58456 -13.47710 -13.37962 -13.18630 -12.91764 -12.72856 -12.68705 -12.31604 -12.13502 -12.11847 -11.55734 -11.17894 -10.84403 -10.50496 -10.11883 -9.74160 -9.37430 -8.13525 -6.30714 -0.44089 0.01677 1.44561 1.47015 1.54144 1.69268 2.17839 2.44366 2.55211 2.85544 3.14964 3.25008 3.50754 3.69172 3.96741 4.08665 4.35474 4.55838 4.66244 4.68747 4.80815 4.88646 4.91674 4.97036 5.03706 5.06261 5.15589 5.46005 5.54051 5.62505 5.65758 6.02263 6.14342 6.68541 6.71786 6.76447 7.22753 7.42938 8.90916 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.004640 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.283257 B = 6033.042426 C = 6365.780694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.259 1.259 12 N -0.588 5.588 13 C 0.063 3.937 14 C 0.535 3.465 15 O -0.602 6.602 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.108 4.108 19 C 0.109 3.891 20 O -0.492 6.492 21 C 0.050 3.950 22 F -0.139 7.139 23 C -0.096 4.096 24 H 0.053 0.947 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.264 0.736 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.418 0.582 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -13.123 14.748 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.183 1.183 12 N -0.317 5.317 13 C -0.078 4.078 14 C 0.325 3.675 15 O -0.485 6.485 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.126 4.126 19 C 0.062 3.938 20 O -0.307 6.307 21 C 0.030 3.970 22 F -0.118 7.118 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.203 0.797 33 H 0.280 0.720 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.343 -12.293 14.278 19.135 hybrid contribution -0.154 0.646 -0.516 0.841 sum 3.189 -11.647 13.762 18.309 Atomic orbital electron populations 1.21888 0.96962 1.00420 0.99952 1.18620 0.91895 0.92235 0.81366 0.97427 1.21542 1.32132 1.13289 0.90753 0.91445 1.25759 0.95013 0.95603 1.02112 1.70025 1.37232 1.23944 1.24528 0.85477 0.78345 0.79077 0.77917 1.21267 1.20301 1.18338 1.48115 1.47989 1.13699 1.21893 1.22571 1.02223 0.80377 1.02589 1.18773 0.79298 0.86509 0.82913 1.90710 1.64083 1.17130 1.76601 1.19719 1.03463 0.95175 0.94067 1.22553 0.95505 0.91748 1.00961 1.21639 0.96809 1.02745 0.91446 1.18724 0.96129 0.87518 0.91412 1.84758 1.37490 1.73672 1.34759 1.18004 1.03078 0.90888 0.85009 1.91482 1.88341 1.80834 1.51101 1.21045 0.97618 1.01086 0.91886 0.92835 0.96321 0.91307 0.92654 0.90416 0.87789 0.90705 0.80149 0.79679 0.72047 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.94 71.98 0.64 -5.71 16 2 C 0.26 13.39 2.63 44.25 0.12 13.51 16 3 H 0.01 0.48 6.92 -2.39 -0.02 0.47 16 4 C -0.54 -28.36 8.37 25.60 0.21 -28.15 16 5 H 0.07 3.35 7.55 -2.91 -0.02 3.33 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 8 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 9 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.59 -24.33 2.75 -830.46 -2.29 -26.62 16 13 C 0.06 1.79 7.91 127.77 1.01 2.80 16 14 C 0.54 22.83 7.51 86.72 0.65 23.49 16 15 O -0.60 -31.75 15.88 -3.98 -0.06 -31.81 16 16 C -0.12 -3.80 5.57 -20.08 -0.11 -3.91 16 17 C -0.09 -1.96 7.60 22.51 0.17 -1.79 16 18 C -0.11 -1.77 9.97 22.32 0.22 -1.55 16 19 C 0.11 2.14 6.72 22.66 0.15 2.29 16 20 O -0.49 -7.67 13.35 -90.83 -1.21 -8.89 16 21 C 0.05 1.28 7.30 22.41 0.16 1.45 16 22 F -0.14 -3.74 17.10 44.97 0.77 -2.98 16 23 C -0.10 -2.93 9.56 22.55 0.22 -2.72 16 24 H 0.05 2.25 6.68 -2.39 -0.02 2.23 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.08 1.92 6.88 -2.39 -0.02 1.90 16 29 H 0.10 2.17 5.26 -2.39 -0.01 2.15 16 30 H 0.07 2.11 6.44 -2.38 -0.02 2.10 16 31 H 0.18 3.39 4.02 -2.91 -0.01 3.38 16 32 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.42 2.07 9.06 -74.06 -0.67 1.40 16 34 H 0.13 4.36 7.79 -2.91 -0.02 4.34 16 Total: -1.00 -73.27 289.81 3.86 -69.40 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.49 Total: 8.17 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 3.90 Total: 0.94 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.04 Total: -78.75 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.28 Total: -40.70 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.77 Total: -2.98 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -73.27 3.86 -69.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613505537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.293 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds