Wall clock time and date at job start Mon Mar 30 2020 00:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.50704 * 109.47424 * 120.00354 * 2 1 3 5 5 H 1.07998 * 120.00235 * 119.99701 * 4 2 1 6 6 C 1.37872 * 119.99473 * 299.99584 * 4 2 1 7 7 N 1.31517 * 119.99807 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00333 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47052 * 89.99964 * 8 6 4 10 10 H 1.48509 * 109.46988 * 209.99580 * 8 6 4 11 11 H 1.48493 * 109.47137 * 329.99703 * 8 6 4 12 12 N 1.46507 * 109.47029 * 239.99953 * 2 1 3 13 13 C 1.46497 * 120.00158 * 300.00325 * 12 2 1 14 14 C 1.34774 * 119.99503 * 119.99557 * 12 2 1 15 15 O 1.21577 * 120.00587 * 6.96072 * 14 12 2 16 16 C 1.47606 * 119.99728 * 186.95459 * 14 12 2 17 17 C 1.39719 * 120.07969 * 20.41432 * 16 14 12 18 18 C 1.37741 * 119.95261 * 179.76613 * 17 16 14 19 19 C 1.38925 * 120.11237 * 0.48566 * 18 17 16 20 20 O 1.35766 * 119.91990 * 179.74548 * 19 18 17 21 21 C 1.39167 * 120.16490 * 359.77107 * 19 18 17 22 22 F 1.35108 * 119.97675 * 179.97438 * 21 19 18 23 23 C 1.37893 * 120.04869 * 359.97438 * 21 19 18 24 24 H 1.09004 * 109.46777 * 299.99466 * 1 2 3 25 25 H 1.09006 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47263 * 59.99824 * 1 2 3 27 27 H 0.97006 * 120.00097 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47562 * 86.44189 * 13 12 2 29 29 H 1.09002 * 109.47120 * 206.44378 * 13 12 2 30 30 H 1.09008 * 109.46969 * 326.44112 * 13 12 2 31 31 H 1.07998 * 120.02337 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.94476 * 180.23359 * 18 17 16 33 33 H 0.96701 * 114.00163 * 270.02760 * 20 19 18 34 34 H 1.08000 * 120.06254 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 2.1374 -0.8597 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7930 -0.0356 -2.0834 15 8 3.1913 1.0852 -1.8316 16 6 3.1582 -0.6789 -3.3607 17 6 2.3966 -1.7423 -3.8521 18 6 2.7368 -2.3376 -5.0467 19 6 3.8420 -1.8891 -5.7590 20 8 4.1769 -2.4821 -6.9335 21 6 4.6072 -0.8338 -5.2714 22 9 5.6815 -0.4011 -5.9670 23 6 4.2695 -0.2295 -4.0788 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 1.9028 -0.5285 4.4375 28 1 0.7057 -2.1455 -1.9442 29 1 2.4327 -2.5654 -2.0402 30 1 1.5913 -2.6123 -0.4723 31 1 1.5398 -2.0950 -3.2973 32 1 2.1458 -3.1570 -5.4282 33 1 4.7865 -3.2267 -6.8384 34 1 4.8629 0.5897 -3.7004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613505544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:53 Heat of formation + Delta-G solvation = -63.749720 kcal Electronic energy + Delta-G solvation = -20176.602166 eV Core-core repulsion = 16797.840692 eV Total energy + Delta-G solvation = -3378.761475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.98963 -40.33317 -38.85773 -36.69963 -35.75829 -33.01005 -31.17476 -30.84189 -29.25956 -26.73377 -25.22792 -23.98725 -22.86407 -21.38289 -19.21528 -18.78121 -17.68671 -16.83989 -16.67949 -16.25206 -15.74210 -15.62200 -15.24088 -14.82944 -14.24395 -14.12924 -13.82299 -13.34533 -13.08168 -12.92028 -12.47701 -12.31662 -12.26872 -12.17971 -11.81261 -11.23118 -11.20648 -10.79055 -10.63525 -10.21212 -9.71173 -9.46330 -9.26731 -9.15157 -8.73718 -8.68814 -7.87957 -6.19941 -4.21361 0.56495 0.97624 2.84353 3.19509 3.33867 3.35410 3.45878 3.74469 3.76823 4.14657 4.30402 4.59894 4.66743 4.91546 5.07995 5.13382 5.42026 5.54829 5.68774 5.72011 5.79862 5.92158 6.10471 6.16914 6.18752 6.25607 6.39729 6.46304 6.74135 7.02479 7.22236 7.27400 7.54389 8.02700 8.36885 8.68888 8.80916 9.40300 10.92579 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.004678 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.491636 B = 5984.231486 C = 6212.562668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.577 5.577 13 C 0.066 3.934 14 C 0.547 3.453 15 O -0.541 6.541 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.128 4.128 19 C 0.088 3.912 20 O -0.489 6.489 21 C 0.063 3.937 22 F -0.132 7.132 23 C -0.085 4.085 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.267 0.733 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.393 0.607 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -5.708 -16.570 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.307 5.307 13 C -0.077 4.077 14 C 0.334 3.666 15 O -0.420 6.420 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.146 4.146 19 C 0.042 3.958 20 O -0.299 6.299 21 C 0.044 3.956 22 F -0.111 7.111 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.250 0.750 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.184 -4.689 -16.462 17.118 hybrid contribution -0.055 0.345 0.291 0.455 sum -0.239 -4.344 -16.171 16.746 Atomic orbital electron populations 1.22462 0.98798 1.01253 0.99427 1.19359 0.90044 0.95248 0.82617 0.91800 1.21119 1.32911 1.14359 0.88401 0.90212 1.24857 0.95625 0.96563 0.95593 1.69871 1.45028 1.40138 0.98013 0.86916 0.80398 0.83798 0.77590 1.20338 1.22060 1.18808 1.47756 1.48622 1.11601 1.22684 1.22295 0.98730 0.83173 1.03497 1.18036 0.79486 0.85916 0.83166 1.90757 1.53870 1.19672 1.77709 1.20046 0.96476 0.97288 0.96530 1.22406 1.00668 0.93934 0.95130 1.21296 0.97334 1.01725 0.94249 1.18659 0.95389 0.94534 0.87225 1.84810 1.68237 1.50674 1.26213 1.17918 0.87139 0.98267 0.92315 1.91506 1.52551 1.88843 1.78196 1.21195 0.97105 0.99817 0.92355 0.92981 0.92433 0.94729 0.92352 0.92829 0.90950 0.89355 0.81747 0.83864 0.75026 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.67 37.16 0.32 -2.99 16 2 C 0.23 5.33 2.22 -69.08 -0.15 5.18 16 3 H 0.06 1.67 5.98 -51.93 -0.31 1.36 16 4 C -0.53 -14.21 8.60 -34.44 -0.30 -14.51 16 5 H 0.08 2.30 7.52 -52.49 -0.39 1.90 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 8 Si 0.88 21.34 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 12 N -0.58 -11.33 2.75 -176.46 -0.49 -11.81 16 13 C 0.07 0.97 7.67 59.85 0.46 1.43 16 14 C 0.55 10.77 7.51 -12.44 -0.09 10.68 16 15 O -0.54 -12.72 15.88 5.30 0.08 -12.63 16 16 C -0.10 -1.52 5.57 -104.96 -0.58 -2.11 16 17 C -0.10 -1.21 7.60 -39.21 -0.30 -1.51 16 18 C -0.13 -1.27 9.97 -39.51 -0.39 -1.67 16 19 C 0.09 0.99 6.72 -38.98 -0.26 0.73 16 20 O -0.49 -4.74 13.35 -19.01 -0.25 -5.00 16 21 C 0.06 0.84 7.30 -39.36 -0.29 0.55 16 22 F -0.13 -1.81 17.10 2.25 0.04 -1.77 16 23 C -0.09 -1.24 9.56 -39.15 -0.37 -1.62 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 0.63 6.99 -51.93 -0.36 0.27 16 29 H 0.07 0.89 5.26 -51.93 -0.27 0.62 16 30 H 0.09 1.45 6.98 -51.92 -0.36 1.09 16 31 H 0.17 1.67 4.02 -52.49 -0.21 1.45 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.39 1.86 9.06 45.56 0.41 2.27 16 34 H 0.15 2.26 7.79 -52.49 -0.41 1.85 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -33.15 283.79 -4.27 -37.42 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.50 Total: 1.68 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.06 Total: -3.79 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.29 Total: -37.39 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.17 Total: -17.63 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.15 -4.27 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613505544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.329 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds