Wall clock time and date at job start Mon Mar 30 2020 00:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.36934 * 119.99850 * 274.43234 * 3 2 1 5 5 H 1.08003 * 119.99971 * 16.52540 * 4 3 2 6 6 C 1.38809 * 120.00084 * 196.52581 * 4 3 2 7 7 N 1.31623 * 119.99989 * 22.04246 * 6 4 3 8 8 Si 1.86801 * 120.00156 * 202.04658 * 6 4 3 9 9 H 1.48506 * 109.47074 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47246 * 119.99611 * 8 6 4 11 11 H 1.48494 * 109.47104 * 239.99818 * 8 6 4 12 12 C 1.46504 * 119.99806 * 94.16334 * 3 2 1 13 13 C 1.50698 * 109.47377 * 84.11210 * 12 3 2 14 14 C 1.37973 * 120.04866 * 358.05016 * 13 12 3 15 15 C 1.38318 * 120.17714 * 179.74855 * 14 13 12 16 16 C 1.38597 * 120.27744 * 0.55115 * 15 14 13 17 17 F 1.35091 * 119.95268 * 179.72626 * 16 15 14 18 18 C 1.38165 * 120.09577 * 359.70101 * 16 15 14 19 19 C 1.39602 * 120.05261 * 178.32379 * 13 12 3 20 20 C 1.47734 * 120.13368 * 0.02562 * 19 13 12 21 21 O 1.21470 * 120.00436 * 5.82287 * 20 19 13 22 22 O 1.34720 * 119.99901 * 185.82751 * 20 19 13 23 23 H 1.08991 * 109.46907 * 59.99965 * 1 2 3 24 24 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46900 * 300.00093 * 1 2 3 26 26 H 1.08996 * 109.47151 * 239.99801 * 2 1 3 27 27 H 1.09005 * 109.46722 * 119.99982 * 2 1 3 28 28 H 0.97001 * 119.99775 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46320 * 204.10688 * 12 3 2 30 30 H 1.08998 * 109.47114 * 324.10854 * 12 3 2 31 31 H 1.08005 * 119.91243 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.86009 * 180.25136 * 15 14 13 33 33 H 1.07996 * 120.08676 * 180.02562 * 18 16 15 34 34 H 0.96695 * 117.00044 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1602 2.0573 -1.1824 5 1 1.6745 1.6916 -2.0751 6 6 2.9281 3.2124 -1.2336 7 7 3.8493 3.4314 -0.3193 8 14 2.6542 4.4563 -2.6000 9 1 1.5689 3.9785 -3.4941 10 1 2.2701 5.7636 -2.0096 11 1 3.9059 4.6154 -3.3829 12 6 2.3494 2.0411 1.2654 13 6 3.7547 1.6768 1.6694 14 6 4.4924 0.8054 0.8947 15 6 5.7844 0.4732 1.2603 16 6 6.3429 1.0038 2.4124 17 9 7.6034 0.6706 2.7662 18 6 5.6127 1.8735 3.1994 19 6 4.3102 2.2160 2.8312 20 6 3.5227 3.1444 3.6680 21 8 2.3560 3.3579 3.4056 22 8 4.0984 3.7543 4.7223 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 4.3857 4.2388 -0.3549 29 1 2.2754 3.1216 1.1418 30 1 1.6531 1.7152 2.0381 31 1 4.0614 0.3850 -0.0019 32 1 6.3586 -0.2062 0.6479 33 1 6.0482 2.2872 4.0969 34 1 3.5430 4.3527 5.2404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737067877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:35 Heat of formation + Delta-G solvation = -82.975562 kcal Electronic energy + Delta-G solvation = -20901.514834 eV Core-core repulsion = 17521.919665 eV Total energy + Delta-G solvation = -3379.595170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.32863 -39.94679 -38.05426 -35.92292 -35.56045 -31.93592 -30.94357 -30.64317 -28.48002 -25.74816 -23.98868 -23.68785 -21.59773 -20.65313 -19.96510 -17.76702 -17.21889 -16.74692 -15.71930 -15.33222 -15.11649 -14.92371 -14.82513 -14.70514 -13.80363 -13.63847 -13.42407 -12.77683 -12.65205 -12.33599 -12.08308 -11.79110 -11.36833 -11.14894 -11.05177 -11.04068 -10.78617 -10.64470 -10.49278 -10.25004 -10.11760 -9.92701 -9.55904 -8.60987 -8.44528 -7.65212 -6.97574 -5.85319 -3.22182 1.32093 2.00261 3.11843 3.35799 3.45448 3.46137 3.49143 4.41042 4.46823 4.84289 5.21610 5.32849 5.41414 5.48922 5.82126 5.87182 5.94515 6.14171 6.23695 6.30964 6.44208 6.51975 6.55426 6.74543 6.78456 6.80429 6.87350 7.00861 7.12513 7.23693 7.57787 7.64150 7.74966 8.26259 8.38810 9.11754 9.76979 10.23190 11.19271 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.007733 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.569228 B = 3619.872108 C = 3654.245810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 N -0.599 5.599 4 C -0.256 4.256 5 H 0.073 0.927 6 C 0.004 3.996 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.205 3.795 13 C 0.055 3.945 14 C -0.057 4.057 15 C -0.126 4.126 16 C 0.046 3.954 17 F -0.153 7.153 18 C -0.105 4.105 19 C -0.130 4.130 20 C 0.528 3.472 21 O -0.505 6.505 22 O -0.521 6.521 23 H 0.051 0.949 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.254 0.746 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -4.122 6.950 8.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 N -0.320 5.320 4 C -0.385 4.385 5 H 0.091 0.909 6 C -0.194 4.194 7 N -0.540 5.540 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.220 1.220 12 C 0.080 3.920 13 C 0.052 3.948 14 C -0.075 4.075 15 C -0.145 4.145 16 C 0.027 3.973 17 F -0.132 7.132 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.374 3.626 21 O -0.394 6.394 22 O -0.333 6.333 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.212 -4.209 6.631 7.947 hybrid contribution 0.047 1.321 -0.396 1.380 sum 1.259 -2.888 6.235 6.985 Atomic orbital electron populations 1.22310 0.99637 0.99112 1.01596 1.20825 0.92348 0.86595 0.98932 1.44222 1.75488 1.09233 1.03093 1.19211 1.25055 1.05788 0.88451 0.90912 1.24768 0.96307 1.00127 0.98206 1.69976 1.20711 1.26664 1.36689 0.86289 0.77469 0.81957 0.81428 1.20445 1.21677 1.21979 1.19933 0.87257 0.99696 0.85141 1.21030 0.99382 0.87247 0.87181 1.20861 0.91743 0.96162 0.98760 1.21322 0.96869 1.00904 0.95438 1.17355 0.80427 1.02149 0.97415 1.91417 1.37988 1.91715 1.92095 1.21018 0.93775 0.97648 0.99963 1.18495 0.94297 1.02634 0.97761 1.20949 0.85303 0.78420 0.77974 1.90879 1.17700 1.61608 1.69225 1.84583 1.48447 1.58671 1.41584 0.92957 0.94376 0.93620 0.93634 0.94338 0.93522 0.87574 0.93841 0.83747 0.85759 0.84963 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.22 37.16 0.38 -2.51 16 2 C 0.14 2.66 5.31 -4.04 -0.02 2.64 16 3 N -0.60 -13.75 1.38 -174.60 -0.24 -13.99 16 4 C -0.26 -6.49 9.54 -15.06 -0.14 -6.63 16 5 H 0.07 1.84 7.92 -52.48 -0.42 1.42 16 6 C 0.00 0.11 4.86 -17.43 -0.08 0.02 16 7 N -0.90 -23.82 9.02 55.49 0.50 -23.32 16 8 Si 0.90 21.15 29.61 -169.99 -5.03 16.12 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 C 0.21 4.75 3.51 -5.19 -0.02 4.73 16 13 C 0.06 1.19 4.23 -104.21 -0.44 0.75 16 14 C -0.06 -1.18 8.47 -39.65 -0.34 -1.51 16 15 C -0.13 -2.33 10.02 -39.42 -0.39 -2.72 16 16 C 0.05 0.83 7.29 -39.48 -0.29 0.54 16 17 F -0.15 -2.68 17.26 2.25 0.04 -2.64 16 18 C -0.10 -1.90 9.59 -39.09 -0.38 -2.27 16 19 C -0.13 -2.58 5.87 -104.99 -0.62 -3.19 16 20 C 0.53 9.87 8.23 34.61 0.28 10.16 16 21 O -0.51 -10.59 14.23 -19.24 -0.27 -10.86 16 22 O -0.52 -7.52 12.70 -40.55 -0.51 -8.03 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 29 H 0.11 2.83 5.64 -51.93 -0.29 2.54 16 30 H 0.04 0.99 7.28 -51.93 -0.38 0.61 16 31 H 0.14 3.12 6.13 -52.48 -0.32 2.80 16 32 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.13 2.11 7.63 -52.49 -0.40 1.71 16 34 H 0.41 3.80 9.11 45.56 0.42 4.22 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -28.29 293.28 -6.21 -34.50 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.06 Total: 3.78 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.05 Total: 0.01 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.26 Total: -37.30 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.79 Total: -18.89 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.29 -6.21 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737067877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.472 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds