Wall clock time and date at job start Mon Mar 30 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.36934 * 119.99850 * 274.43234 * 3 2 1 5 5 H 1.08003 * 119.99971 * 16.52540 * 4 3 2 6 6 C 1.38809 * 120.00084 * 196.52581 * 4 3 2 7 7 N 1.31623 * 119.99989 * 22.04246 * 6 4 3 8 8 Si 1.86801 * 120.00156 * 202.04658 * 6 4 3 9 9 H 1.48506 * 109.47074 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47246 * 119.99611 * 8 6 4 11 11 H 1.48494 * 109.47104 * 239.99818 * 8 6 4 12 12 C 1.46504 * 119.99806 * 94.16334 * 3 2 1 13 13 C 1.50698 * 109.47377 * 84.11210 * 12 3 2 14 14 C 1.37973 * 120.04866 * 358.05016 * 13 12 3 15 15 C 1.38318 * 120.17714 * 179.74855 * 14 13 12 16 16 C 1.38597 * 120.27744 * 0.55115 * 15 14 13 17 17 F 1.35091 * 119.95268 * 179.72626 * 16 15 14 18 18 C 1.38165 * 120.09577 * 359.70101 * 16 15 14 19 19 C 1.39602 * 120.05261 * 178.32379 * 13 12 3 20 20 C 1.47734 * 120.13368 * 0.02562 * 19 13 12 21 21 O 1.21470 * 120.00436 * 5.82287 * 20 19 13 22 22 O 1.34720 * 119.99901 * 185.82751 * 20 19 13 23 23 H 1.08991 * 109.46907 * 59.99965 * 1 2 3 24 24 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46900 * 300.00093 * 1 2 3 26 26 H 1.08996 * 109.47151 * 239.99801 * 2 1 3 27 27 H 1.09005 * 109.46722 * 119.99982 * 2 1 3 28 28 H 0.97001 * 119.99775 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46320 * 204.10688 * 12 3 2 30 30 H 1.08998 * 109.47114 * 324.10854 * 12 3 2 31 31 H 1.08005 * 119.91243 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.86009 * 180.25136 * 15 14 13 33 33 H 1.07996 * 120.08676 * 180.02562 * 18 16 15 34 34 H 0.96695 * 117.00044 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1602 2.0573 -1.1824 5 1 1.6745 1.6916 -2.0751 6 6 2.9281 3.2124 -1.2336 7 7 3.8493 3.4314 -0.3193 8 14 2.6542 4.4563 -2.6000 9 1 1.5689 3.9785 -3.4941 10 1 2.2701 5.7636 -2.0096 11 1 3.9059 4.6154 -3.3829 12 6 2.3494 2.0411 1.2654 13 6 3.7547 1.6768 1.6694 14 6 4.4924 0.8054 0.8947 15 6 5.7844 0.4732 1.2603 16 6 6.3429 1.0038 2.4124 17 9 7.6034 0.6706 2.7662 18 6 5.6127 1.8735 3.1994 19 6 4.3102 2.2160 2.8312 20 6 3.5227 3.1444 3.6680 21 8 2.3560 3.3579 3.4056 22 8 4.0984 3.7543 4.7223 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 4.3857 4.2388 -0.3549 29 1 2.2754 3.1216 1.1418 30 1 1.6531 1.7152 2.0381 31 1 4.0614 0.3850 -0.0019 32 1 6.3586 -0.2062 0.6479 33 1 6.0482 2.2872 4.0969 34 1 3.5430 4.3527 5.2404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737067877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:34 Heat of formation + Delta-G solvation = -98.112045 kcal Electronic energy + Delta-G solvation = -20902.171201 eV Core-core repulsion = 17521.919665 eV Total energy + Delta-G solvation = -3380.251537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.74915 -41.40319 -39.55799 -37.57794 -36.95630 -33.73872 -32.49457 -32.18878 -30.13442 -27.47826 -25.57771 -25.30265 -23.09487 -22.19636 -21.58174 -19.18827 -18.76181 -18.42790 -17.22590 -16.93843 -16.63252 -16.44235 -16.29798 -16.25086 -15.61045 -15.30281 -14.94349 -14.24512 -14.14555 -13.82941 -13.72037 -13.36087 -13.07208 -12.81816 -12.63495 -12.53010 -12.46087 -12.25531 -12.16624 -12.03397 -11.82466 -11.56171 -11.18374 -10.50699 -9.94411 -9.22885 -8.81266 -7.79847 -5.16621 -0.17137 0.49319 1.45935 1.52029 1.58179 1.65114 2.17245 2.54570 2.89661 3.33681 3.38563 3.59585 3.98455 4.04722 4.25252 4.43943 4.47129 4.71056 4.73885 4.86586 4.92995 4.98790 5.08317 5.15037 5.23122 5.29435 5.45307 5.52781 5.60352 5.68199 5.73455 5.93999 6.07232 6.35510 7.08095 7.19196 7.91516 8.34452 9.20818 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.007733 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.569228 B = 3619.872108 C = 3654.245810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 N -0.610 5.610 4 C -0.256 4.256 5 H 0.070 0.930 6 C -0.038 4.038 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.301 1.301 11 H -0.297 1.297 12 C 0.220 3.780 13 C 0.035 3.965 14 C -0.069 4.069 15 C -0.120 4.120 16 C 0.048 3.952 17 F -0.145 7.145 18 C -0.095 4.095 19 C -0.142 4.142 20 C 0.533 3.467 21 O -0.535 6.535 22 O -0.505 6.505 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.244 0.756 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -4.857 7.676 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 N -0.332 5.332 4 C -0.386 4.386 5 H 0.088 0.912 6 C -0.234 4.234 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.229 1.229 11 H -0.225 1.225 12 C 0.094 3.906 13 C 0.032 3.968 14 C -0.087 4.087 15 C -0.139 4.139 16 C 0.029 3.971 17 F -0.124 7.124 18 C -0.114 4.114 19 C -0.144 4.144 20 C 0.379 3.621 21 O -0.427 6.427 22 O -0.319 6.319 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.900 -4.956 7.383 9.093 hybrid contribution -0.139 1.515 -0.529 1.611 sum 1.761 -3.441 6.853 7.868 Atomic orbital electron populations 1.22186 0.98039 1.00930 1.00509 1.20983 0.93415 0.84775 0.99718 1.44348 1.75819 1.10641 1.02353 1.19359 1.24066 1.05985 0.89148 0.91175 1.25274 0.96783 1.01430 0.99939 1.70136 1.21234 1.26210 1.37670 0.85518 0.77061 0.79910 0.79724 1.19816 1.22891 1.22453 1.19559 0.88590 0.97378 0.85084 1.20882 0.98686 0.88661 0.88574 1.20721 0.92702 0.96826 0.98452 1.21509 0.96086 1.00647 0.95628 1.17384 0.80654 1.01843 0.97237 1.91441 1.37405 1.91601 1.91980 1.21223 0.92839 0.96892 1.00485 1.18668 0.95165 1.02871 0.97671 1.20801 0.84683 0.78187 0.78443 1.90873 1.18956 1.62640 1.70228 1.84508 1.48385 1.58644 1.40371 0.94283 0.91083 0.94396 0.93216 0.93078 0.94664 0.91526 0.94194 0.85195 0.83334 0.82526 0.70945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 10.22 71.98 0.74 -4.51 16 2 C 0.14 5.11 5.31 86.38 0.46 5.57 16 3 N -0.61 -28.20 1.38 -706.32 -0.97 -29.18 16 4 C -0.26 -13.06 9.54 84.03 0.80 -12.26 16 5 H 0.07 3.55 7.92 -2.91 -0.02 3.53 16 6 C -0.04 -2.00 4.86 84.86 0.41 -1.58 16 7 N -0.91 -48.96 9.02 21.65 0.20 -48.77 16 8 Si 0.95 44.08 29.61 68.60 2.03 46.11 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 12 C 0.22 10.35 3.51 85.63 0.30 10.65 16 13 C 0.04 1.53 4.23 -19.60 -0.08 1.44 16 14 C -0.07 -2.80 8.47 22.23 0.19 -2.61 16 15 C -0.12 -4.21 10.02 22.37 0.22 -3.98 16 16 C 0.05 1.63 7.29 22.34 0.16 1.80 16 17 F -0.15 -4.65 17.26 44.97 0.78 -3.87 16 18 C -0.10 -3.24 9.59 22.59 0.22 -3.02 16 19 C -0.14 -5.50 5.87 -20.11 -0.12 -5.62 16 20 C 0.53 19.46 8.23 70.33 0.58 20.04 16 21 O -0.54 -22.59 14.23 19.93 0.28 -22.30 16 22 O -0.51 -13.40 12.70 -56.30 -0.71 -14.12 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.05 1.78 8.04 -2.38 -0.02 1.76 16 28 H 0.24 13.29 8.31 -92.71 -0.77 12.52 16 29 H 0.07 3.68 5.64 -2.38 -0.01 3.66 16 30 H 0.04 1.86 7.28 -2.39 -0.02 1.84 16 31 H 0.13 5.63 6.13 -2.91 -0.02 5.61 16 32 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.16 4.48 7.63 -2.91 -0.02 4.46 16 34 H 0.43 6.96 9.11 -74.06 -0.67 6.29 16 Total: -1.00 -60.36 293.28 5.94 -54.42 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.46 Total: 11.80 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 3.88 Total: 5.91 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.78 Total: -77.95 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.43 Total: -36.42 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.36 5.94 -54.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737067877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.692 kcal (2) G-P(sol) polarization free energy of solvation -60.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds