Wall clock time and date at job start Mon Mar 30 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 119.99511 * 2 1 4 4 N 1.34774 * 120.00117 * 180.02562 * 2 1 3 5 5 N 1.40102 * 119.99768 * 180.02562 * 4 2 1 6 6 C 1.34774 * 119.99768 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00066 * 180.02562 * 6 5 4 8 8 N 1.34787 * 119.99946 * 359.97438 * 6 5 4 9 9 C 1.40196 * 119.99563 * 180.02562 * 8 6 5 10 10 C 1.40395 * 125.97533 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86535 * 179.71691 * 10 9 8 12 12 N 1.34960 * 107.86064 * 0.42509 * 11 10 9 13 13 C 1.46500 * 125.97985 * 179.83521 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71356 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31213 * 125.96849 * 179.97438 * 9 8 6 23 23 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47094 * 299.99905 * 1 2 3 25 25 H 1.08996 * 109.47089 * 59.99703 * 1 2 3 26 26 H 0.96996 * 119.99843 * 359.97438 * 4 2 1 27 27 H 0.96993 * 119.99947 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99666 * 0.02562 * 8 6 5 29 29 H 1.07994 * 126.06763 * 359.97438 * 10 9 8 30 30 H 1.08003 * 126.07235 * 180.26862 * 11 10 9 31 31 H 1.09004 * 109.47078 * 4.72118 * 13 12 11 32 32 H 1.08993 * 109.47364 * 244.71890 * 13 12 11 33 33 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 7 3.5820 -1.1671 0.0000 6 6 4.2559 -2.3343 0.0000 7 8 5.4717 -2.3342 0.0010 8 7 3.5819 -3.5015 0.0000 9 6 4.2830 -4.7156 0.0006 10 6 5.6794 -4.8616 0.0006 11 6 5.9581 -6.1850 0.0076 12 7 4.7865 -6.8549 0.0022 13 6 4.6277 -8.3112 0.0033 14 6 3.7627 -8.7214 1.1673 15 1 3.3701 -7.9721 1.8387 16 6 3.4724 -10.0531 1.3749 17 7 3.9461 -10.9651 0.5542 18 14 2.3996 -10.5614 2.8172 19 1 3.2554 -10.8255 4.0017 20 1 1.4428 -9.4701 3.1312 21 1 1.6479 -11.7928 2.4653 22 7 3.7488 -5.9141 0.0011 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6960 -2.0072 -0.0005 27 1 4.0669 -0.3271 0.0004 28 1 2.6120 -3.5015 -0.0004 29 1 6.4025 -4.0596 -0.0001 30 1 6.9434 -6.6273 0.0135 31 1 5.6060 -8.7833 0.0938 32 1 4.1570 -8.6261 -0.9279 33 1 4.5029 -10.7012 -0.1949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753935587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:04 Heat of formation + Delta-G solvation = 57.819696 kcal Electronic energy + Delta-G solvation = -19341.360634 eV Core-core repulsion = 16020.083518 eV Total energy + Delta-G solvation = -3321.277116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.13755 -40.31509 -39.29191 -36.03742 -35.00004 -33.68371 -32.19508 -30.83791 -29.46663 -29.13651 -26.33674 -23.49347 -22.32358 -21.88235 -20.89637 -19.89058 -18.92152 -17.99120 -17.23944 -16.67379 -16.19616 -16.00199 -15.44869 -15.36262 -14.81704 -14.31354 -14.14575 -13.82853 -13.27245 -13.15665 -12.90601 -12.54167 -12.37567 -11.93156 -11.68258 -11.21569 -10.87771 -10.75080 -10.60952 -10.33415 -10.21474 -9.91638 -9.08340 -8.76990 -8.62012 -8.29801 -7.59746 -6.62416 -4.36879 1.47878 2.01520 2.39986 2.45888 2.88112 3.33731 3.37159 3.53094 3.60585 3.62490 4.04478 4.36703 4.56515 4.69341 4.92641 5.11002 5.29195 5.33214 5.56656 5.93456 6.04203 6.14646 6.34802 6.53014 6.63876 6.72436 6.95542 7.20537 7.38132 7.61021 7.76455 7.86170 8.24267 8.29456 8.45456 8.56700 9.31518 10.75287 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.003838 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.988576 B = 7293.619957 C = 8203.658109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.514 3.486 3 O -0.542 6.542 4 N -0.531 5.531 5 N -0.531 5.531 6 C 0.722 3.278 7 O -0.546 6.546 8 N -0.640 5.640 9 C 0.273 3.727 10 C -0.283 4.283 11 C 0.053 3.947 12 N -0.316 5.316 13 C 0.249 3.751 14 C -0.609 4.609 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.080 2.920 19 H -0.285 1.285 20 H -0.287 1.287 21 H -0.282 1.282 22 N -0.301 5.301 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.422 0.578 27 H 0.445 0.555 28 H 0.402 0.598 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 16.940 -1.707 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.301 3.699 3 O -0.417 6.417 4 N -0.284 5.284 5 N -0.289 5.289 6 C 0.421 3.579 7 O -0.417 6.417 8 N -0.292 5.292 9 C 0.019 3.981 10 C -0.314 4.314 11 C -0.096 4.096 12 N -0.098 5.098 13 C 0.131 3.869 14 C -0.647 4.647 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.540 5.540 18 Si 0.907 3.093 19 H -0.212 1.212 20 H -0.213 1.213 21 H -0.207 1.207 22 N -0.132 5.132 23 H 0.102 0.898 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.264 0.736 27 H 0.292 0.708 28 H 0.237 0.763 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.235 15.421 -0.970 16.662 hybrid contribution 0.853 1.619 -0.767 1.984 sum -5.381 17.040 -1.737 17.954 Atomic orbital electron populations 1.21805 0.89085 1.05126 1.06199 1.21155 0.90768 0.82134 0.75806 1.90775 1.70321 1.30775 1.49832 1.45273 0.95491 1.10471 1.77120 1.44565 0.93938 1.08933 1.81470 1.15390 0.84847 0.79190 0.78469 1.90987 1.10080 1.83615 1.57044 1.41308 1.09099 1.02138 1.76654 1.18726 0.90953 0.84881 1.03558 1.21503 0.94044 0.96166 1.19708 1.22572 0.92388 0.92377 1.02287 1.48784 1.01619 1.07270 1.52104 1.19786 0.98827 0.69014 0.99306 1.22126 1.34535 0.95613 1.12434 0.91782 1.25927 0.97963 0.92174 1.02109 1.70823 1.32108 1.36061 1.15027 0.83379 0.75834 0.75781 0.74347 1.21191 1.21263 1.20700 1.77331 1.12826 0.94954 1.28091 0.89838 0.87791 0.87817 0.73614 0.70769 0.76287 0.82000 0.81325 0.93527 0.94707 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 10.39 36.01 0.37 -0.20 16 2 C 0.51 4.18 8.06 -10.98 -0.09 4.09 16 3 O -0.54 -6.76 16.94 5.55 0.09 -6.67 16 4 N -0.53 -4.19 6.26 31.22 0.20 -4.00 16 5 N -0.53 -5.83 6.26 27.64 0.17 -5.65 16 6 C 0.72 10.27 8.64 -86.91 -0.75 9.52 16 7 O -0.55 -9.56 14.31 5.29 0.08 -9.48 16 8 N -0.64 -9.24 5.41 -15.50 -0.08 -9.32 16 9 C 0.27 5.24 8.11 -154.36 -1.25 3.99 16 10 C -0.28 -5.44 9.61 -39.84 -0.38 -5.82 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 N -0.32 -7.14 3.67 -62.56 -0.23 -7.37 16 13 C 0.25 6.12 5.57 -5.19 -0.03 6.09 16 14 C -0.61 -16.70 9.24 -34.44 -0.32 -17.02 16 15 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 16 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 17 N -0.90 -25.87 13.65 55.43 0.76 -25.11 16 18 Si 1.08 24.38 29.90 -169.99 -5.08 19.29 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 N -0.30 -6.65 12.42 31.44 0.39 -6.26 16 23 H 0.08 0.11 7.91 -51.93 -0.41 -0.30 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.42 2.24 6.54 -182.60 -1.19 1.05 16 27 H 0.45 4.93 8.10 -182.60 -1.48 3.45 16 28 H 0.40 4.40 6.74 -40.82 -0.28 4.13 16 29 H 0.16 3.04 5.91 -52.49 -0.31 2.73 16 30 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 31 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 32 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 33 H 0.27 7.47 7.22 -40.82 -0.29 7.18 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -35.56 297.18 -7.24 -42.80 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.27 Total: 5.27 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.74 Total: 2.02 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 1.20 Total: -57.72 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.17 Total: -16.15 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.56 -7.24 -42.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753935587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.621 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds