Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 119.99511 * 2 1 4 4 N 1.34774 * 120.00117 * 180.02562 * 2 1 3 5 5 N 1.40102 * 119.99768 * 180.02562 * 4 2 1 6 6 C 1.34774 * 119.99768 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00066 * 180.02562 * 6 5 4 8 8 N 1.34787 * 119.99946 * 359.97438 * 6 5 4 9 9 C 1.40196 * 119.99563 * 180.02562 * 8 6 5 10 10 C 1.40395 * 125.97533 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86535 * 179.71691 * 10 9 8 12 12 N 1.34960 * 107.86064 * 0.42509 * 11 10 9 13 13 C 1.46500 * 125.97985 * 179.83521 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71356 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31213 * 125.96849 * 179.97438 * 9 8 6 23 23 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47094 * 299.99905 * 1 2 3 25 25 H 1.08996 * 109.47089 * 59.99703 * 1 2 3 26 26 H 0.96996 * 119.99843 * 359.97438 * 4 2 1 27 27 H 0.96993 * 119.99947 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99666 * 0.02562 * 8 6 5 29 29 H 1.07994 * 126.06763 * 359.97438 * 10 9 8 30 30 H 1.08003 * 126.07235 * 180.26862 * 11 10 9 31 31 H 1.09004 * 109.47078 * 4.72118 * 13 12 11 32 32 H 1.08993 * 109.47364 * 244.71890 * 13 12 11 33 33 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 7 3.5820 -1.1671 0.0000 6 6 4.2559 -2.3343 0.0000 7 8 5.4717 -2.3342 0.0010 8 7 3.5819 -3.5015 0.0000 9 6 4.2830 -4.7156 0.0006 10 6 5.6794 -4.8616 0.0006 11 6 5.9581 -6.1850 0.0076 12 7 4.7865 -6.8549 0.0022 13 6 4.6277 -8.3112 0.0033 14 6 3.7627 -8.7214 1.1673 15 1 3.3701 -7.9721 1.8387 16 6 3.4724 -10.0531 1.3749 17 7 3.9461 -10.9651 0.5542 18 14 2.3996 -10.5614 2.8172 19 1 3.2554 -10.8255 4.0017 20 1 1.4428 -9.4701 3.1312 21 1 1.6479 -11.7928 2.4653 22 7 3.7488 -5.9141 0.0011 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6960 -2.0072 -0.0005 27 1 4.0669 -0.3271 0.0004 28 1 2.6120 -3.5015 -0.0004 29 1 6.4025 -4.0596 -0.0001 30 1 6.9434 -6.6273 0.0135 31 1 5.6060 -8.7833 0.0938 32 1 4.1570 -8.6261 -0.9279 33 1 4.5029 -10.7012 -0.1949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753935587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = 30.677434 kcal Electronic energy + Delta-G solvation = -19342.537611 eV Core-core repulsion = 16020.083518 eV Total energy + Delta-G solvation = -3322.454093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.46448 -41.47585 -40.31131 -36.99659 -36.50877 -35.49319 -33.08780 -32.42454 -31.04142 -29.71732 -28.16309 -25.28630 -23.70993 -22.74779 -22.25578 -21.23938 -20.07003 -19.23480 -18.87604 -18.02690 -17.20952 -17.03693 -16.68719 -16.37523 -16.15058 -15.84625 -15.57754 -15.08345 -14.97307 -14.24863 -13.94791 -13.73149 -13.39039 -13.29994 -13.20713 -12.65211 -12.55656 -12.14174 -11.95581 -11.89317 -11.53081 -11.20407 -11.01383 -10.67401 -9.92248 -9.66261 -9.17979 -8.75864 -6.54231 0.59249 0.91682 1.18526 1.32908 1.53030 1.59604 1.60424 1.79982 2.14099 2.20753 2.50444 3.03260 3.37760 3.79079 3.89906 4.12928 4.48047 4.53209 4.60968 4.69112 4.74626 4.82616 4.96693 5.05764 5.25043 5.44445 5.59062 5.77931 5.92770 6.18254 6.27358 6.32490 6.42700 6.86246 7.02242 7.20697 7.21801 8.60585 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.003838 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.988576 B = 7293.619957 C = 8203.658109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.514 3.486 3 O -0.588 6.588 4 N -0.522 5.522 5 N -0.523 5.523 6 C 0.725 3.275 7 O -0.580 6.580 8 N -0.629 5.629 9 C 0.284 3.716 10 C -0.290 4.290 11 C 0.058 3.942 12 N -0.342 5.342 13 C 0.259 3.741 14 C -0.621 4.621 15 H 0.047 0.953 16 C -0.019 4.019 17 N -0.925 5.925 18 Si 1.122 2.878 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.277 1.277 22 N -0.338 5.338 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.435 0.565 27 H 0.447 0.553 28 H 0.418 0.582 29 H 0.169 0.831 30 H 0.202 0.798 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 17.690 -1.112 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.303 3.697 3 O -0.466 6.466 4 N -0.277 5.277 5 N -0.278 5.278 6 C 0.424 3.576 7 O -0.454 6.454 8 N -0.283 5.283 9 C 0.028 3.972 10 C -0.321 4.321 11 C -0.090 4.090 12 N -0.124 5.124 13 C 0.139 3.861 14 C -0.659 4.659 15 H 0.065 0.935 16 C -0.218 4.218 17 N -0.561 5.561 18 Si 0.943 3.057 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.202 1.202 22 N -0.169 5.169 23 H 0.130 0.870 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.280 0.720 27 H 0.294 0.706 28 H 0.257 0.743 29 H 0.186 0.814 30 H 0.219 0.781 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.481 16.204 -0.389 17.851 hybrid contribution 1.223 1.557 -0.996 2.217 sum -6.258 17.761 -1.385 18.882 Atomic orbital electron populations 1.21915 0.84977 1.07391 1.07142 1.22130 0.92366 0.81111 0.74050 1.90763 1.71542 1.32400 1.51907 1.45485 0.93701 1.11540 1.76961 1.44331 0.95777 1.07765 1.79933 1.15364 0.84488 0.79550 0.78204 1.90956 1.11699 1.84306 1.58429 1.41180 1.09882 1.00810 1.76407 1.18980 0.91418 0.85495 1.01322 1.21695 0.94330 0.96282 1.19807 1.23171 0.92870 0.92424 1.00500 1.48568 1.02751 1.06642 1.54397 1.19446 0.98407 0.70699 0.97499 1.22313 1.35040 0.95501 1.13029 0.93460 1.27257 0.98456 0.92358 1.03774 1.70918 1.33108 1.36481 1.15611 0.82842 0.74857 0.75848 0.72132 1.19599 1.20254 1.20207 1.77253 1.13557 0.95807 1.30264 0.86972 0.86767 0.86710 0.72025 0.70588 0.74317 0.81368 0.78073 0.92824 0.96369 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.39 71.24 0.74 0.12 16 2 C 0.51 7.35 8.06 87.66 0.71 8.06 16 3 O -0.59 -14.13 16.94 -3.04 -0.05 -14.18 16 4 N -0.52 -7.18 6.26 -173.53 -1.09 -8.27 16 5 N -0.52 -10.80 6.26 -184.74 -1.16 -11.96 16 6 C 0.73 19.80 8.64 179.05 1.55 21.35 16 7 O -0.58 -19.90 14.31 -4.00 -0.06 -19.96 16 8 N -0.63 -17.30 5.41 -321.22 -1.74 -19.04 16 9 C 0.28 10.67 8.11 133.31 1.08 11.75 16 10 C -0.29 -10.89 9.61 22.10 0.21 -10.68 16 11 C 0.06 2.21 11.44 83.52 0.96 3.17 16 12 N -0.34 -15.41 3.67 -351.84 -1.29 -16.70 16 13 C 0.26 12.87 5.57 85.64 0.48 13.35 16 14 C -0.62 -34.26 9.24 25.60 0.24 -34.02 16 15 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 16 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 17 N -0.92 -52.97 13.65 21.45 0.29 -52.68 16 18 Si 1.12 48.31 29.90 68.60 2.05 50.36 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 22 N -0.34 -14.87 12.42 -54.44 -0.68 -15.55 16 23 H 0.11 -0.17 7.91 -2.39 -0.02 -0.19 16 24 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.44 3.47 6.54 -213.32 -1.39 2.08 16 27 H 0.45 9.56 8.10 -213.33 -1.73 7.83 16 28 H 0.42 8.39 6.74 -92.71 -0.63 7.76 16 29 H 0.17 6.16 5.91 -2.91 -0.02 6.15 16 30 H 0.20 5.95 8.06 -2.91 -0.02 5.93 16 31 H 0.05 2.57 7.94 -2.39 -0.02 2.55 16 32 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 33 H 0.26 14.79 7.22 -92.71 -0.67 14.12 16 Total: -1.00 -77.10 297.18 0.25 -76.85 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -2.46 Total: 18.60 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.42 Total: 12.52 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.66 Total: -124.19 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.11 Total: -34.14 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.36 kcal Total: -77.10 0.25 -76.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753935587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.528 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds