Wall clock time and date at job start Mon Mar 30 2020 00:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47049 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47350 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47302 * 180.02562 * 17 16 15 19 19 C 1.38429 * 122.53930 * 269.73819 * 18 17 16 20 20 C 1.33393 * 114.91740 * 179.76169 * 19 18 17 21 21 S 1.75880 * 109.59524 * 0.47541 * 20 19 18 22 22 C 1.33391 * 122.53873 * 90.02466 * 18 17 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 28 28 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 29 29 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 30 30 H 1.09000 * 109.47444 * 300.00712 * 16 15 13 31 31 H 1.09000 * 109.46920 * 60.00019 * 16 15 13 32 32 H 1.08995 * 109.47422 * 299.99902 * 17 16 15 33 33 H 1.09000 * 109.47286 * 60.00007 * 17 16 15 34 34 H 1.08000 * 122.54060 * 359.97438 * 19 18 17 35 35 H 1.07994 * 125.20277 * 180.20906 * 20 19 18 36 36 H 1.07997 * 125.20698 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4118 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7590 17 6 3.2100 -0.4672 6.0082 18 6 3.2596 0.5009 7.1621 19 6 4.3820 1.2579 7.4511 20 6 4.2574 2.0686 8.5031 21 16 2.6539 1.8857 9.2021 22 6 2.2274 0.6890 7.9857 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 0.7092 1.1618 -3.4843 27 1 2.2490 -1.6318 1.1525 28 1 1.9761 -1.5507 3.8326 29 1 3.6480 -1.1213 3.3985 30 1 3.3725 1.0762 4.5145 31 1 1.7006 0.6462 4.9480 32 1 2.5377 -1.2894 6.2530 33 1 4.2094 -0.8590 5.8190 34 1 5.2885 1.1993 6.8670 35 1 5.0253 2.7323 8.8720 36 1 1.2755 0.1836 7.9166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783401944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:01 Heat of formation + Delta-G solvation = -47.769658 kcal Electronic energy + Delta-G solvation = -17212.738396 eV Core-core repulsion = 14400.883045 eV Total energy + Delta-G solvation = -2811.855351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57728 -39.26495 -36.77084 -34.97797 -34.27870 -31.46640 -30.41997 -28.16039 -27.33335 -24.69996 -23.19203 -22.10642 -21.01825 -19.61932 -18.87893 -18.38753 -17.34665 -17.13948 -16.65932 -16.16716 -15.84307 -14.94965 -14.75843 -14.47497 -14.32382 -13.87290 -13.72845 -13.54872 -13.30330 -13.01651 -12.89332 -12.75981 -12.53978 -12.45646 -12.26788 -12.25716 -12.14026 -11.61253 -11.49253 -11.11286 -10.68146 -10.53467 -9.70463 -9.67035 -9.23871 -8.17180 -6.35270 0.13915 0.81659 1.12108 1.45056 1.47456 1.55301 1.81404 1.91230 2.37447 2.73882 3.12964 3.92348 4.01411 4.07976 4.22483 4.36389 4.57681 4.61290 4.72257 4.75762 4.79677 4.86666 4.93013 4.97387 5.09440 5.13439 5.24781 5.43637 5.45337 5.59553 5.63289 5.66590 5.71125 5.93153 6.11062 6.73632 7.03592 7.33404 7.64400 8.89042 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051391 B = 0.002866 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.708175 B = 9768.331630 C = 9909.829778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.708 5.708 13 C 0.490 3.510 14 O -0.609 6.609 15 C -0.126 4.126 16 C -0.089 4.089 17 C -0.052 4.052 18 C -0.110 4.110 19 C -0.145 4.145 20 C -0.216 4.216 21 S 0.080 5.920 22 C -0.224 4.224 23 H 0.041 0.959 24 H 0.010 0.990 25 H 0.065 0.935 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -5.377 20.985 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.358 5.358 13 C 0.278 3.722 14 O -0.491 6.491 15 C -0.166 4.166 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.122 4.122 19 C -0.175 4.175 20 C -0.351 4.351 21 S 0.343 5.657 22 C -0.359 4.359 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.200 0.800 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.066 -3.772 22.128 23.012 hybrid contribution 0.753 -0.712 -2.240 2.468 sum 5.819 -4.483 19.888 21.201 Atomic orbital electron populations 1.21894 0.98496 0.99436 0.99394 1.18298 0.91027 0.91817 0.82384 0.98842 1.21554 1.32608 1.13612 0.90836 0.90680 1.25852 0.94872 0.95596 1.02485 1.70059 1.37073 1.24016 1.24662 0.85369 0.78662 0.78716 0.77411 1.18716 1.21275 1.19497 1.46323 1.65302 1.14295 1.09837 1.21692 0.77234 0.87177 0.86097 1.90631 1.53411 1.18936 1.86162 1.21708 1.04724 0.99627 0.90507 1.21182 1.01085 0.97424 0.93093 1.20332 1.03491 0.95698 0.89599 1.19207 0.93527 1.00781 0.98713 1.20398 1.00362 0.97945 0.98773 1.25900 1.00734 1.06484 1.02027 1.84194 1.09586 1.39723 1.32183 1.25731 1.04062 1.05297 1.00788 0.93964 0.97130 0.91653 0.92572 0.75838 0.86264 0.86395 0.93420 0.93404 0.89189 0.89052 0.83084 0.80028 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.15 2.56 44.24 0.11 14.27 16 3 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 4 C -0.55 -29.18 8.73 25.60 0.22 -28.96 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 N -0.71 -29.16 5.07 -446.10 -2.26 -31.42 16 13 C 0.49 19.21 7.79 87.66 0.68 19.90 16 14 O -0.61 -30.42 15.65 -3.03 -0.05 -30.47 16 15 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 16 C -0.09 -2.23 4.49 30.59 0.14 -2.09 16 17 C -0.05 -0.90 5.47 29.85 0.16 -0.73 16 18 C -0.11 -2.20 5.06 -20.92 -0.11 -2.30 16 19 C -0.14 -2.75 9.98 21.22 0.21 -2.54 16 20 C -0.22 -3.79 11.23 66.72 0.75 -3.04 16 21 S 0.08 1.44 23.34 -56.49 -1.32 0.12 16 22 C -0.22 -4.34 10.98 66.72 0.73 -3.61 16 23 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 26 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.41 13.63 8.54 -92.70 -0.79 12.84 16 28 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.39 8.10 -2.39 -0.02 1.38 16 31 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.09 1.26 8.12 -2.39 -0.02 1.25 16 33 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.31 320.19 3.11 -67.20 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.28 Total: 20.96 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.19 Total: -17.16 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.02 Total: -84.68 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Total: -70.31 3.11 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783401944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.429 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds