Wall clock time and date at job start Mon Mar 30 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46675 * 2 1 4 4 C 1.37090 * 120.00282 * 263.55912 * 3 2 1 5 5 H 1.08000 * 119.99914 * 188.39014 * 4 3 2 6 6 C 1.38948 * 119.99954 * 8.38923 * 4 3 2 7 7 N 1.31406 * 120.00166 * 25.16762 * 6 4 3 8 8 Si 1.86804 * 120.00054 * 205.16631 * 6 4 3 9 9 H 1.48502 * 109.47155 * 84.98700 * 8 6 4 10 10 H 1.48502 * 109.47330 * 204.98800 * 8 6 4 11 11 H 1.48501 * 109.47100 * 324.99069 * 8 6 4 12 12 C 1.34779 * 119.99679 * 83.55536 * 3 2 1 13 13 O 1.21294 * 119.99945 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00115 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.47102 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47170 * 179.97438 * 16 15 14 18 18 C 1.38427 * 122.54138 * 270.00730 * 17 16 15 19 19 C 1.33388 * 114.92052 * 180.02562 * 18 17 16 20 20 S 1.75885 * 109.59563 * 359.75228 * 19 18 17 21 21 C 1.33386 * 122.53970 * 90.02545 * 17 16 15 22 22 H 1.08995 * 109.47620 * 299.99660 * 1 2 3 23 23 H 1.08999 * 109.47727 * 60.00116 * 1 2 3 24 24 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47150 * 240.00947 * 2 1 3 26 26 H 1.08995 * 109.47249 * 119.99804 * 2 1 3 27 27 H 0.97003 * 120.00575 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47598 * 59.99353 * 14 12 3 29 29 H 1.09001 * 109.46959 * 299.99375 * 14 12 3 30 30 H 1.09003 * 109.47031 * 59.99776 * 15 14 12 31 31 H 1.09001 * 109.46954 * 299.99685 * 15 14 12 32 32 H 1.09003 * 109.46961 * 60.00209 * 16 15 14 33 33 H 1.09001 * 109.47336 * 299.99927 * 16 15 14 34 34 H 1.07993 * 122.54014 * 0.03575 * 18 17 16 35 35 H 1.07998 * 125.20299 * 180.02562 * 19 18 17 36 36 H 1.08006 * 125.20241 * 359.96022 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3722 1.9832 -1.1797 5 1 2.8577 2.9479 -1.1693 6 6 2.1066 1.3522 -2.3888 7 7 1.1282 0.4790 -2.4731 8 14 3.1402 1.7450 -3.8944 9 1 4.3644 0.9045 -3.8874 10 1 2.3535 1.4636 -5.1221 11 1 3.5243 3.1793 -3.8705 12 6 2.1193 2.0603 1.1599 13 8 2.5239 3.2037 1.1600 14 6 1.7306 1.3984 2.4567 15 6 1.9393 2.3791 3.6124 16 6 1.5441 1.7074 4.9291 17 6 1.7503 2.6731 6.0674 18 6 2.9452 2.7631 6.7603 19 6 2.9603 3.6687 7.7396 20 16 1.4006 4.4779 7.8187 21 6 0.7950 3.5057 6.4839 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9429 0.0381 -3.3171 28 1 2.3497 0.5152 2.6138 29 1 0.6819 1.1042 2.4144 30 1 1.3204 3.2626 3.4555 31 1 2.9881 2.6730 3.6546 32 1 2.1627 0.8238 5.0862 33 1 0.4952 1.4138 4.8867 34 1 3.8006 2.1470 6.5257 35 1 3.8028 3.8765 8.3825 36 1 -0.1972 3.5753 6.0629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783402426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:39 Heat of formation + Delta-G solvation = -5.509846 kcal Electronic energy + Delta-G solvation = -17786.283971 eV Core-core repulsion = 14976.261143 eV Total energy + Delta-G solvation = -2810.022828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.79151 -38.19971 -35.15333 -33.62014 -31.76363 -29.88184 -29.32362 -27.31333 -24.85026 -23.24878 -22.16510 -21.30217 -18.79193 -18.51904 -17.56021 -16.77985 -15.96316 -15.42141 -14.88200 -14.41933 -14.06094 -13.55288 -13.36209 -13.06502 -12.73182 -12.64067 -12.56658 -12.18706 -11.85889 -11.63553 -11.35185 -11.13841 -11.04218 -10.95889 -10.72298 -10.57265 -10.35611 -10.25666 -10.04478 -9.76668 -8.85813 -8.80274 -8.37302 -8.25795 -7.70961 -6.32168 -3.72969 1.00694 1.65811 1.97209 2.72538 3.18357 3.28067 3.33026 3.96041 4.16596 4.82578 4.92299 5.07338 5.11566 5.30080 5.39152 5.53392 5.58915 5.75315 5.86692 5.98005 6.03084 6.08570 6.11567 6.34013 6.38154 6.48678 6.59691 6.64526 6.74108 6.78286 6.82426 7.29625 7.50514 7.76726 8.15169 8.56614 9.24228 9.51304 10.07553 10.68771 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.040497 B = 0.003550 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.240395 B = 7884.617440 C = 8231.782092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 N -0.445 5.445 4 C -0.307 4.307 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.868 5.868 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.441 3.559 13 O -0.596 6.596 14 C -0.129 4.129 15 C -0.091 4.091 16 C -0.063 4.063 17 C -0.092 4.092 18 C -0.126 4.126 19 C -0.214 4.214 20 S 0.073 5.927 21 C -0.210 4.210 22 H 0.024 0.976 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -0.984 15.976 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 N -0.163 5.163 4 C -0.434 4.434 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.230 3.770 13 O -0.481 6.481 14 C -0.170 4.170 15 C -0.129 4.129 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.157 4.157 19 C -0.349 4.349 20 S 0.336 5.664 21 C -0.345 4.345 22 H 0.043 0.957 23 H 0.110 0.890 24 H 0.055 0.945 25 H 0.118 0.882 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.176 0.612 16.729 16.782 hybrid contribution 0.929 -1.118 -1.692 2.230 sum -0.247 -0.506 15.038 15.048 Atomic orbital electron populations 1.22122 0.96803 0.99726 1.01997 1.21421 0.94425 0.83784 1.00629 1.43852 1.55606 1.11255 1.05625 1.19726 1.35932 1.05453 0.82310 0.87928 1.25162 0.96053 0.97271 0.98837 1.70111 1.25073 1.29003 1.26590 0.86086 0.80007 0.79156 0.80358 1.20441 1.21187 1.19546 1.20016 0.84924 0.86913 0.85167 1.90501 1.51982 1.18597 1.87045 1.21578 1.02219 0.99058 0.94127 1.21230 1.02635 0.98127 0.90918 1.20442 1.02091 0.96081 0.91693 1.19044 0.93048 0.99432 0.98840 1.20165 0.98791 1.00388 0.96340 1.25542 1.01169 1.03037 1.05201 1.84158 1.07364 1.40855 1.34013 1.25457 1.04161 1.02356 1.02571 0.95713 0.89049 0.94453 0.88178 0.95012 0.92377 0.90825 0.90354 0.91507 0.91488 0.91002 0.91082 0.84199 0.82083 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.64 37.16 0.36 -2.71 16 2 C 0.12 2.69 5.07 -4.04 -0.02 2.66 16 3 N -0.44 -11.38 2.64 -114.82 -0.30 -11.68 16 4 C -0.31 -8.57 9.43 -14.94 -0.14 -8.71 16 5 H 0.10 3.06 7.31 -52.49 -0.38 2.67 16 6 C 0.03 0.76 4.90 -17.47 -0.09 0.68 16 7 N -0.87 -22.24 8.64 55.50 0.48 -21.76 16 8 Si 0.92 20.59 29.62 -169.99 -5.04 15.55 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 12 C 0.44 10.83 7.58 -10.99 -0.08 10.75 16 13 O -0.60 -16.77 15.57 5.55 0.09 -16.68 16 14 C -0.13 -2.36 4.31 -27.88 -0.12 -2.48 16 15 C -0.09 -1.50 4.49 -26.73 -0.12 -1.62 16 16 C -0.06 -0.80 5.47 -27.88 -0.15 -0.95 16 17 C -0.09 -1.16 5.06 -106.25 -0.54 -1.69 16 18 C -0.13 -1.48 9.98 -41.21 -0.41 -1.89 16 19 C -0.21 -2.28 11.23 29.04 0.33 -1.95 16 20 S 0.07 0.78 23.34 -107.50 -2.51 -1.73 16 21 C -0.21 -2.52 10.98 29.04 0.32 -2.20 16 22 H 0.02 0.47 6.45 -51.93 -0.34 0.13 16 23 H 0.09 2.19 6.38 -51.93 -0.33 1.86 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.10 2.40 5.83 -51.93 -0.30 2.10 16 26 H 0.03 0.61 6.71 -51.93 -0.35 0.26 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.07 1.21 7.42 -51.93 -0.39 0.82 16 29 H 0.08 1.33 6.41 -51.93 -0.33 1.00 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -30.20 308.84 -8.23 -38.42 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.93 Total: 3.34 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.67 Total: -10.12 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.18 Total: -33.44 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.09 Total: -16.68 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.04 Total: 15.55 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.20 -8.23 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783402426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.915 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds