Wall clock time and date at job start Mon Mar 30 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46675 * 2 1 4 4 C 1.37090 * 120.00282 * 263.55912 * 3 2 1 5 5 H 1.08000 * 119.99914 * 188.39014 * 4 3 2 6 6 C 1.38948 * 119.99954 * 8.38923 * 4 3 2 7 7 N 1.31406 * 120.00166 * 25.16762 * 6 4 3 8 8 Si 1.86804 * 120.00054 * 205.16631 * 6 4 3 9 9 H 1.48502 * 109.47155 * 84.98700 * 8 6 4 10 10 H 1.48502 * 109.47330 * 204.98800 * 8 6 4 11 11 H 1.48501 * 109.47100 * 324.99069 * 8 6 4 12 12 C 1.34779 * 119.99679 * 83.55536 * 3 2 1 13 13 O 1.21294 * 119.99945 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00115 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.47102 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47170 * 179.97438 * 16 15 14 18 18 C 1.38427 * 122.54138 * 270.00730 * 17 16 15 19 19 C 1.33388 * 114.92052 * 180.02562 * 18 17 16 20 20 S 1.75885 * 109.59563 * 359.75228 * 19 18 17 21 21 C 1.33386 * 122.53970 * 90.02545 * 17 16 15 22 22 H 1.08995 * 109.47620 * 299.99660 * 1 2 3 23 23 H 1.08999 * 109.47727 * 60.00116 * 1 2 3 24 24 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47150 * 240.00947 * 2 1 3 26 26 H 1.08995 * 109.47249 * 119.99804 * 2 1 3 27 27 H 0.97003 * 120.00575 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47598 * 59.99353 * 14 12 3 29 29 H 1.09001 * 109.46959 * 299.99375 * 14 12 3 30 30 H 1.09003 * 109.47031 * 59.99776 * 15 14 12 31 31 H 1.09001 * 109.46954 * 299.99685 * 15 14 12 32 32 H 1.09003 * 109.46961 * 60.00209 * 16 15 14 33 33 H 1.09001 * 109.47336 * 299.99927 * 16 15 14 34 34 H 1.07993 * 122.54014 * 0.03575 * 18 17 16 35 35 H 1.07998 * 125.20299 * 180.02562 * 19 18 17 36 36 H 1.08006 * 125.20241 * 359.96022 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3722 1.9832 -1.1797 5 1 2.8577 2.9479 -1.1693 6 6 2.1066 1.3522 -2.3888 7 7 1.1282 0.4790 -2.4731 8 14 3.1402 1.7450 -3.8944 9 1 4.3644 0.9045 -3.8874 10 1 2.3535 1.4636 -5.1221 11 1 3.5243 3.1793 -3.8705 12 6 2.1193 2.0603 1.1599 13 8 2.5239 3.2037 1.1600 14 6 1.7306 1.3984 2.4567 15 6 1.9393 2.3791 3.6124 16 6 1.5441 1.7074 4.9291 17 6 1.7503 2.6731 6.0674 18 6 2.9452 2.7631 6.7603 19 6 2.9603 3.6687 7.7396 20 16 1.4006 4.4779 7.8187 21 6 0.7950 3.5057 6.4839 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9429 0.0381 -3.3171 28 1 2.3497 0.5152 2.6138 29 1 0.6819 1.1042 2.4144 30 1 1.3204 3.2626 3.4555 31 1 2.9881 2.6730 3.6546 32 1 2.1627 0.8238 5.0862 33 1 0.4952 1.4138 4.8867 34 1 3.8006 2.1470 6.5257 35 1 3.8028 3.8765 8.3825 36 1 -0.1972 3.5753 6.0629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783402426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:38 Heat of formation + Delta-G solvation = -21.787352 kcal Electronic energy + Delta-G solvation = -17786.989817 eV Core-core repulsion = 14976.261143 eV Total energy + Delta-G solvation = -2810.728674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50920 -39.26314 -37.05429 -34.97292 -33.71527 -31.25180 -30.81843 -28.57182 -26.62039 -24.45492 -23.80223 -22.56540 -20.40951 -19.57332 -18.75627 -18.46161 -17.76361 -16.63200 -16.47389 -16.08990 -15.76782 -15.03533 -14.52755 -14.40995 -14.33197 -13.84377 -13.83030 -13.54168 -13.32404 -13.07926 -12.86020 -12.72208 -12.48558 -12.42477 -12.29001 -12.09989 -11.95201 -11.68071 -11.55709 -11.40684 -10.79753 -10.24800 -9.67536 -9.66456 -9.22397 -8.31823 -5.81132 0.14209 0.82135 1.11739 1.36861 1.42915 1.53079 1.82296 2.08332 2.30469 3.07975 3.17040 3.97592 4.03224 4.06803 4.22676 4.39990 4.43986 4.57753 4.63702 4.74367 4.78368 4.86024 4.93195 4.95388 4.98393 5.15802 5.19271 5.27567 5.44887 5.46741 5.53548 5.59803 5.67564 5.94877 6.12658 6.58316 7.23598 7.57350 8.14048 8.66331 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.040497 B = 0.003550 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.240395 B = 7884.617440 C = 8231.782092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.120 3.880 3 N -0.456 5.456 4 C -0.354 4.354 5 H 0.067 0.933 6 C 0.006 3.994 7 N -0.868 5.868 8 Si 0.977 3.023 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.424 3.576 13 O -0.646 6.646 14 C -0.116 4.116 15 C -0.081 4.081 16 C -0.052 4.052 17 C -0.108 4.108 18 C -0.145 4.145 19 C -0.214 4.214 20 S 0.085 5.915 21 C -0.226 4.226 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.273 0.727 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.185 0.815 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -2.634 16.894 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 N -0.174 5.174 4 C -0.481 4.481 5 H 0.085 0.915 6 C -0.197 4.197 7 N -0.506 5.506 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.214 3.786 13 O -0.535 6.535 14 C -0.156 4.156 15 C -0.120 4.120 16 C -0.091 4.091 17 C -0.120 4.120 18 C -0.175 4.175 19 C -0.349 4.349 20 S 0.348 5.652 21 C -0.361 4.361 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.203 0.797 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.433 -1.083 17.650 17.741 hybrid contribution 0.974 -0.576 -1.993 2.292 sum -0.459 -1.659 15.657 15.751 Atomic orbital electron populations 1.21970 0.95616 1.01242 1.00835 1.21528 0.95361 0.82034 1.01340 1.44114 1.55520 1.12500 1.05315 1.19550 1.38620 1.05531 0.84427 0.91488 1.25798 0.96361 0.96946 1.00618 1.70188 1.24476 1.28389 1.27513 0.85207 0.78827 0.78315 0.77488 1.19457 1.19703 1.20713 1.21166 0.83855 0.86655 0.86888 1.90458 1.54027 1.21007 1.88015 1.21549 1.03563 0.99637 0.90802 1.21108 1.00979 0.97286 0.92595 1.20328 1.03250 0.96261 0.89299 1.19175 0.93693 0.99933 0.99246 1.20370 0.99016 1.01276 0.96842 1.25901 1.01716 1.02225 1.05018 1.84106 1.07440 1.40374 1.33230 1.25714 1.04718 1.02524 1.03131 0.94398 0.92641 0.91487 0.90254 0.91393 0.91693 0.88095 0.88462 0.93946 0.93457 0.89165 0.89651 0.83099 0.79740 0.81154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.64 71.98 0.69 -4.77 16 2 C 0.12 5.15 5.07 86.38 0.44 5.59 16 3 N -0.46 -23.62 2.64 -635.55 -1.68 -25.30 16 4 C -0.35 -20.41 9.43 84.04 0.79 -19.62 16 5 H 0.07 4.25 7.31 -2.91 -0.02 4.23 16 6 C 0.01 0.30 4.90 84.93 0.42 0.72 16 7 N -0.87 -44.03 8.64 21.66 0.19 -43.85 16 8 Si 0.98 42.38 29.62 68.60 2.03 44.42 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.42 21.12 7.58 87.66 0.66 21.79 16 13 O -0.65 -38.02 15.57 -3.07 -0.05 -38.07 16 14 C -0.12 -4.04 4.31 29.85 0.13 -3.91 16 15 C -0.08 -2.63 4.49 30.60 0.14 -2.49 16 16 C -0.05 -1.20 5.47 29.85 0.16 -1.04 16 17 C -0.11 -2.58 5.06 -20.92 -0.11 -2.68 16 18 C -0.14 -3.16 9.98 21.22 0.21 -2.95 16 19 C -0.21 -4.15 11.23 66.72 0.75 -3.40 16 20 S 0.09 1.71 23.34 -56.49 -1.32 0.39 16 21 C -0.23 -5.15 10.98 66.72 0.73 -4.42 16 22 H 0.04 1.36 6.45 -2.39 -0.02 1.35 16 23 H 0.05 2.61 6.38 -2.39 -0.02 2.59 16 24 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.08 3.73 5.83 -2.39 -0.01 3.72 16 26 H 0.07 2.40 6.71 -2.39 -0.02 2.38 16 27 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 28 H 0.10 2.99 7.42 -2.39 -0.02 2.97 16 29 H 0.10 3.04 6.41 -2.39 -0.02 3.03 16 30 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.09 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -67.70 308.84 5.26 -62.43 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.07 Total: 17.16 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.02 Total: -17.19 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.49 Total: -69.15 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.05 Total: -38.07 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.32 Total: 0.39 kcal Total: -67.70 5.26 -62.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783402426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.644 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds