Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35504 * 117.00354 * 2 1 4 4 C 1.39435 * 120.46580 * 179.97438 * 3 2 1 5 5 C 1.38199 * 118.50709 * 179.74627 * 4 3 2 6 6 N 1.32464 * 119.26854 * 0.25107 * 5 4 3 7 7 C 1.32464 * 120.88703 * 0.02562 * 6 5 4 8 8 N 1.38398 * 119.18744 * 180.02562 * 7 6 5 9 9 N 1.40096 * 119.99802 * 359.97438 * 8 7 6 10 10 C 1.34778 * 120.00014 * 179.97438 * 9 8 7 11 11 O 1.21582 * 120.00664 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99650 * 0.02562 * 10 9 8 13 13 C 1.46498 * 119.99532 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46785 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99835 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00319 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47199 * 89.99709 * 18 16 14 20 20 H 1.48502 * 109.46864 * 209.99332 * 18 16 14 21 21 H 1.48489 * 109.47111 * 329.99435 * 18 16 14 22 22 N 1.32487 * 121.62559 * 359.97438 * 7 6 5 23 23 H 1.09003 * 109.46829 * 60.00138 * 1 2 3 24 24 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46643 * 300.00321 * 1 2 3 26 26 H 1.08002 * 120.74971 * 0.02620 * 4 3 2 27 27 H 1.08002 * 120.36848 * 180.22982 * 5 4 3 28 28 H 0.97003 * 119.99890 * 179.97438 * 8 7 6 29 29 H 0.97003 * 120.00308 * 0.02562 * 9 8 7 30 30 H 0.96992 * 120.00140 * 359.97438 * 12 10 9 31 31 H 1.09000 * 109.47623 * 299.99615 * 13 12 10 32 32 H 1.08999 * 109.47407 * 60.00552 * 13 12 10 33 33 H 0.97002 * 119.99971 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 3.4361 1.2915 0.0005 5 6 4.0212 2.5436 -0.0049 6 7 3.2484 3.6195 -0.0053 7 6 1.9284 3.5086 -0.0001 8 7 1.1548 4.6562 -0.0013 9 7 1.7693 5.9152 -0.0074 10 6 1.0159 7.0328 -0.0090 11 8 1.5490 8.1254 -0.0148 12 7 -0.3287 6.9390 -0.0043 13 6 -1.1475 8.1538 -0.0056 14 6 -2.6065 7.7761 0.0010 15 1 -2.8948 6.7353 0.0053 16 6 -3.5731 8.7592 0.0006 17 7 -3.2220 10.0266 -0.0051 18 14 -5.3815 8.2910 0.0080 19 1 -5.8562 8.1719 1.4101 20 1 -6.1668 9.3383 -0.6931 21 1 -5.5590 6.9908 -0.6868 22 7 1.3306 2.3264 0.0052 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 4.0434 0.3984 0.0005 27 1 5.0965 2.6437 -0.0083 28 1 0.1871 4.5887 0.0021 29 1 2.7369 5.9827 -0.0111 30 1 -0.7541 6.0674 -0.0001 31 1 -0.9218 8.7452 0.8818 32 1 -0.9276 8.7394 -0.8982 33 1 -3.9021 10.7183 -0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787360078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = 8.870181 kcal Electronic energy + Delta-G solvation = -19347.428025 eV Core-core repulsion = 16024.028298 eV Total energy + Delta-G solvation = -3323.399727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.23171 -41.12789 -39.57148 -37.50220 -36.26431 -34.45697 -34.29187 -33.00749 -30.53017 -29.13841 -28.36750 -25.15717 -24.66095 -24.48622 -22.03770 -20.66054 -20.29264 -18.87871 -18.32886 -17.98208 -17.31090 -16.87537 -16.71515 -16.49858 -16.25207 -16.04636 -15.61816 -15.52175 -14.99875 -14.60793 -14.22886 -14.05825 -13.20485 -12.93543 -12.89617 -12.72311 -12.49279 -12.25069 -11.97238 -11.61046 -11.48008 -11.39458 -10.82941 -10.40869 -10.39135 -9.94733 -8.83344 -8.28787 -6.45231 0.13993 0.21983 0.55461 1.44483 1.46641 1.57601 1.96685 1.98530 2.02851 2.40355 2.82489 3.06749 3.10124 3.20964 3.97429 4.20303 4.39927 4.42161 4.45729 4.60144 4.78013 4.97486 5.15080 5.25142 5.31287 5.38597 5.51530 5.78510 5.82759 6.03006 6.10653 6.31657 6.64340 6.92432 7.22248 7.31859 7.46286 8.83348 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.004081 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.715638 B = 6858.792865 C = 8140.054553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.388 3.612 4 C -0.294 4.294 5 C 0.219 3.781 6 N -0.608 5.608 7 C 0.592 3.408 8 N -0.493 5.493 9 N -0.509 5.509 10 C 0.705 3.295 11 O -0.621 6.621 12 N -0.717 5.717 13 C 0.282 3.718 14 C -0.557 4.557 15 H 0.083 0.917 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.984 3.016 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.256 1.256 22 N -0.631 5.631 23 H 0.057 0.943 24 H 0.128 0.872 25 H 0.057 0.943 26 H 0.180 0.820 27 H 0.217 0.783 28 H 0.439 0.561 29 H 0.444 0.556 30 H 0.399 0.601 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 -23.349 0.007 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.207 6.207 3 C 0.200 3.800 4 C -0.320 4.320 5 C 0.057 3.943 6 N -0.336 5.336 7 C 0.234 3.766 8 N -0.230 5.230 9 N -0.266 5.266 10 C 0.404 3.596 11 O -0.499 6.499 12 N -0.372 5.372 13 C 0.159 3.841 14 C -0.595 4.595 15 H 0.101 0.899 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.807 3.193 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.180 1.180 22 N -0.372 5.372 23 H 0.076 0.924 24 H 0.146 0.854 25 H 0.076 0.924 26 H 0.198 0.802 27 H 0.234 0.766 28 H 0.285 0.715 29 H 0.291 0.709 30 H 0.235 0.765 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.783 -21.651 0.001 23.758 hybrid contribution -0.904 -0.611 0.017 1.091 sum 8.879 -22.261 0.018 23.967 Atomic orbital electron populations 1.23153 0.75468 1.05113 1.02524 1.86267 1.24626 1.23247 1.86536 1.20103 0.90202 0.83579 0.86088 1.21974 0.91727 1.02224 1.16101 1.23484 1.01550 0.84942 0.84373 1.67873 1.03328 1.36218 1.26220 1.18420 0.85835 0.83672 0.88666 1.42470 1.06680 0.93319 1.80540 1.44176 1.08599 0.92643 1.81144 1.15898 0.82471 0.82637 0.78555 1.90956 1.72612 1.25000 1.61286 1.45364 1.03347 1.11355 1.77180 1.18555 0.89111 0.81699 0.94732 1.21566 0.90199 0.94500 1.53232 0.89869 1.26005 1.05014 0.94434 0.93802 1.70127 1.36007 1.00811 1.49720 0.85165 0.77131 0.78413 0.78551 1.19657 1.20975 1.18000 1.67062 1.42124 0.97672 1.30356 0.92379 0.85394 0.92375 0.80248 0.76617 0.71500 0.70916 0.76537 0.98825 0.98806 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.41 113.37 1.18 1.63 16 2 O -0.30 -5.52 10.49 -88.05 -0.92 -6.44 16 3 C 0.39 8.01 7.53 84.85 0.64 8.65 16 4 C -0.29 -4.47 10.12 22.55 0.23 -4.25 16 5 C 0.22 3.37 11.29 84.59 0.95 4.33 16 6 N -0.61 -14.13 9.38 -198.21 -1.86 -15.99 16 7 C 0.59 15.43 8.54 261.51 2.23 17.66 16 8 N -0.49 -13.69 6.42 -59.78 -0.38 -14.08 16 9 N -0.51 -16.45 6.28 -184.74 -1.16 -17.61 16 10 C 0.71 29.63 8.68 179.05 1.55 31.18 16 11 O -0.62 -31.55 17.18 -3.97 -0.07 -31.62 16 12 N -0.72 -30.69 5.51 -482.28 -2.66 -33.35 16 13 C 0.28 15.32 5.43 85.64 0.46 15.79 16 14 C -0.56 -29.85 9.28 25.60 0.24 -29.61 16 15 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 18 Si 0.98 41.74 29.54 68.60 2.03 43.77 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 N -0.63 -15.33 9.40 -310.89 -2.92 -18.25 16 23 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 24 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 26 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 27 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.44 11.46 6.82 -213.32 -1.45 10.00 16 29 H 0.44 13.51 8.01 -213.32 -1.71 11.80 16 30 H 0.40 14.28 6.24 -92.71 -0.58 13.70 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.57 299.26 -2.27 -74.84 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -2.56 Total: 27.42 kcal Atomic # 6 Polarization: 38.30 SS G_CDS: 7.95 Total: 46.25 kcal Atomic # 7 Polarization: -145.53 SS G_CDS: -8.70 Total: -154.23 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.99 Total: -38.06 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -72.57 -2.27 -74.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.711 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds