Wall clock time and date at job start Mon Mar 30 2020 00:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00333 * 2 1 4 4 C 1.38760 * 120.02205 * 359.97438 * 3 2 1 5 5 C 1.38196 * 120.09635 * 180.02562 * 4 3 2 6 6 C 1.38189 * 120.15344 * 359.76147 * 5 4 3 7 7 C 1.38851 * 120.05449 * 0.51324 * 6 5 4 8 8 N 1.40048 * 120.04975 * 179.73917 * 7 6 5 9 9 C 1.34773 * 120.00146 * 24.82080 * 8 7 6 10 10 O 1.21295 * 120.00102 * 5.52427 * 9 8 7 11 11 C 1.50699 * 120.00182 * 185.52951 * 9 8 7 12 12 C 1.52993 * 109.47073 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47073 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00260 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00142 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00164 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00214 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47034 * 89.99941 * 17 15 13 19 19 H 1.48498 * 109.47380 * 210.00586 * 17 15 13 20 20 H 1.48502 * 109.46919 * 330.00156 * 17 15 13 21 21 C 1.38731 * 120.02891 * 179.97438 * 3 2 1 22 22 F 1.35100 * 120.07637 * 359.95808 * 21 3 2 23 23 H 1.08997 * 109.47169 * 59.99912 * 1 2 3 24 24 H 1.08998 * 109.47412 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46947 * 300.00385 * 1 2 3 26 26 H 1.07998 * 119.95351 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.92540 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.96854 * 180.25790 * 6 5 4 29 29 H 0.96995 * 119.99653 * 204.54581 * 8 7 6 30 30 H 1.08995 * 109.47176 * 300.00336 * 11 9 8 31 31 H 1.09000 * 109.46818 * 60.00034 * 11 9 8 32 32 H 1.09003 * 109.47447 * 300.00009 * 12 11 9 33 33 H 1.09004 * 109.47517 * 60.00284 * 12 11 9 34 34 H 0.97002 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2911 2.3754 -0.0005 5 6 1.9169 3.6076 -0.0011 6 6 3.2966 3.6853 0.0039 7 6 4.0586 2.5245 -0.0013 8 7 5.4568 2.6034 -0.0018 9 6 6.0702 3.6970 0.4923 10 8 5.4181 4.5682 1.0280 11 6 7.5664 3.8376 0.3792 12 6 8.0038 5.1593 1.0135 13 6 9.5001 5.2996 0.9009 14 1 10.0809 4.5238 0.4242 15 6 10.1275 6.4188 1.4055 16 7 9.4203 7.3638 1.9856 17 14 11.9821 6.5931 1.2654 18 1 12.3198 7.2819 -0.0061 19 1 12.4925 7.3890 2.4104 20 1 12.6082 5.2466 1.2804 21 6 3.4317 1.2846 0.0005 22 9 4.1695 0.1529 0.0019 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2126 2.3185 -0.0005 27 1 1.3265 4.5118 -0.0011 28 1 3.7826 4.6498 0.0077 29 1 5.9838 1.8693 -0.3541 30 1 8.0493 3.0085 0.8963 31 1 7.8538 3.8269 -0.6722 32 1 7.5209 5.9882 0.4959 33 1 7.7164 5.1706 2.0649 34 1 9.8618 8.1511 2.3410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812544748.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:54 Heat of formation + Delta-G solvation = -97.041095 kcal Electronic energy + Delta-G solvation = -19425.799368 eV Core-core repulsion = 16045.594271 eV Total energy + Delta-G solvation = -3380.205097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.80113 -40.47321 -39.55818 -37.33071 -34.46805 -33.56025 -31.23365 -30.42133 -29.27829 -27.54979 -25.80820 -23.14478 -22.74937 -21.33520 -19.86895 -18.59039 -17.52399 -17.35305 -16.54365 -16.31296 -16.10141 -15.59309 -15.24453 -14.98406 -14.69532 -14.57433 -14.45538 -13.52589 -13.08809 -12.72062 -12.62862 -12.35198 -12.20969 -11.95417 -11.49227 -11.42488 -11.22320 -10.96195 -10.63792 -10.34756 -10.04180 -9.73748 -9.28979 -9.12735 -8.37593 -8.35565 -8.08038 -6.00472 -4.05177 0.99515 1.20446 2.73745 2.92146 3.31502 3.34042 3.38335 3.41163 3.60066 4.12595 4.44222 4.61471 4.75046 4.85624 4.87462 5.03595 5.15250 5.26687 5.34905 5.46720 5.69082 5.89128 6.07739 6.09063 6.13500 6.21221 6.41556 6.75346 6.76442 7.12100 7.52403 7.68453 7.77230 8.00231 8.29152 8.45844 9.02401 9.58852 11.10430 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.050915 B = 0.003414 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.803650 B = 8200.730073 C = 8655.276460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.065 4.065 6 C -0.145 4.145 7 C 0.171 3.829 8 N -0.678 5.678 9 C 0.512 3.488 10 O -0.506 6.506 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.024 3.976 22 F -0.133 7.133 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.414 0.586 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.546 -12.985 -6.016 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.084 4.084 6 C -0.165 4.165 7 C 0.074 3.926 8 N -0.323 5.323 9 C 0.303 3.697 10 O -0.379 6.379 11 C -0.169 4.169 12 C -0.001 4.001 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.001 3.999 22 F -0.112 7.112 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.177 0.823 29 H 0.250 0.750 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.776 -12.364 -5.529 22.347 hybrid contribution 1.090 -0.387 -0.197 1.173 sum -16.685 -12.751 -5.726 21.766 Atomic orbital electron populations 1.23092 0.77999 1.04053 1.01558 1.86108 1.21630 1.25901 1.88822 1.18628 0.90071 0.85551 0.99044 1.21058 1.00055 0.91469 1.10506 1.20930 0.94065 0.97187 0.96254 1.21411 0.93395 0.98729 1.03012 1.17662 0.84518 0.91741 0.98720 1.43945 1.03613 1.22402 1.62348 1.21932 0.92306 0.79777 0.75705 1.90642 1.66936 1.39997 1.40374 1.21948 0.86800 1.04567 1.03541 1.18932 0.95607 0.88955 0.96608 1.21188 0.92202 1.04792 1.38533 0.92497 1.25019 0.98292 0.95852 0.95166 1.69989 1.35475 1.08894 1.38410 0.86573 0.85513 0.78124 0.77640 1.20637 1.21195 1.19851 1.16509 0.86295 0.81516 1.15602 1.91454 1.76362 1.48556 1.94845 0.92438 0.88113 0.92413 0.84713 0.84707 0.82257 0.75032 0.89616 0.89487 0.95632 0.95631 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.65 10.36 -19.62 -0.20 -3.85 16 3 C 0.11 1.45 6.69 -39.21 -0.26 1.19 16 4 C -0.21 -2.26 9.04 -39.40 -0.36 -2.62 16 5 C -0.07 -0.76 10.03 -39.61 -0.40 -1.16 16 6 C -0.15 -2.14 8.72 -39.37 -0.34 -2.48 16 7 C 0.17 2.60 6.43 -83.62 -0.54 2.06 16 8 N -0.68 -10.27 5.31 -9.82 -0.05 -10.32 16 9 C 0.51 9.54 7.64 -10.99 -0.08 9.45 16 10 O -0.51 -11.11 13.15 5.54 0.07 -11.03 16 11 C -0.13 -2.50 5.64 -27.89 -0.16 -2.66 16 12 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 13 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.02 0.34 7.31 -39.14 -0.29 0.06 16 22 F -0.13 -1.97 16.66 2.25 0.04 -1.94 16 23 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.14 1.02 6.29 -52.49 -0.33 0.69 16 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.16 2.66 5.78 -52.49 -0.30 2.35 16 29 H 0.41 5.10 8.46 -40.82 -0.35 4.76 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.44 300.34 -5.71 -39.15 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.85 Total: 0.88 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.96 Total: -7.58 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.68 Total: -36.55 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.13 Total: -14.89 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.44 -5.71 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812544748.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.890 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds