Wall clock time and date at job start Mon Mar 30 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47070 * 2 1 4 4 C 1.36935 * 119.99879 * 92.36326 * 3 2 1 5 5 H 1.07994 * 120.00039 * 33.92557 * 4 3 2 6 6 C 1.38814 * 119.99639 * 214.19523 * 4 3 2 7 7 N 1.31616 * 120.00415 * 22.65438 * 6 4 3 8 8 Si 1.86809 * 119.99663 * 202.65636 * 6 4 3 9 9 H 1.48497 * 109.47043 * 60.00073 * 8 6 4 10 10 H 1.48497 * 109.46717 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47137 * 299.99918 * 8 6 4 12 12 C 1.46499 * 119.99911 * 272.36501 * 3 2 1 13 13 C 1.50696 * 109.47226 * 269.99842 * 12 3 2 14 14 C 1.38467 * 119.82831 * 269.72532 * 13 12 3 15 15 C 1.37838 * 120.23002 * 179.76256 * 14 13 12 16 16 C 1.39719 * 119.86661 * 0.48605 * 15 14 13 17 17 C 1.47566 * 120.16893 * 179.74335 * 16 15 14 18 18 O 1.21489 * 119.99655 * 180.02562 * 17 16 15 19 19 O 1.34729 * 119.99816 * 0.02667 * 17 16 15 20 20 C 1.39872 * 119.65906 * 359.77250 * 16 15 14 21 21 F 1.35103 * 120.11422 * 179.97438 * 20 16 15 22 22 C 1.38206 * 119.82174 * 89.99826 * 13 12 3 23 23 H 1.08998 * 109.46727 * 60.00430 * 1 2 3 24 24 H 1.09003 * 109.46633 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47371 * 300.00085 * 1 2 3 26 26 H 1.08998 * 109.47371 * 239.99915 * 2 1 3 27 27 H 1.08997 * 109.47197 * 119.99820 * 2 1 3 28 28 H 0.96998 * 120.00043 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46907 * 30.00091 * 12 3 2 30 30 H 1.09000 * 109.47060 * 149.99586 * 12 3 2 31 31 H 1.08007 * 119.88283 * 359.97438 * 14 13 12 32 32 H 1.07992 * 120.06422 * 180.23150 * 15 14 13 33 33 H 0.96707 * 116.99601 * 179.97438 * 19 17 16 34 34 H 1.08004 * 119.94360 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2927 2.0104 1.1849 5 1 2.6836 1.4457 2.0183 6 6 2.0630 3.3731 1.3165 7 7 1.2018 3.9749 0.5238 8 14 2.9763 4.3527 2.6188 9 1 4.4380 4.2571 2.3756 10 1 2.5560 5.7754 2.5533 11 1 2.6611 3.8043 3.9624 12 6 2.2132 2.0893 -1.2677 13 6 3.6183 1.8589 -1.7609 14 6 4.6296 2.7295 -1.3909 15 6 5.9187 2.5238 -1.8333 16 6 6.2038 1.4389 -2.6663 17 6 7.5805 1.2157 -3.1484 18 8 7.8247 0.2716 -3.8729 19 8 8.5664 2.0589 -2.7851 20 6 5.1774 0.5658 -3.0413 21 9 5.4426 -0.4860 -3.8467 22 6 3.8898 0.7830 -2.5849 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.0410 4.9270 0.6161 29 1 1.5032 1.7154 -2.0054 30 1 2.0516 3.1565 -1.1162 31 1 4.4080 3.5706 -0.7506 32 1 6.7060 3.2023 -1.5401 33 1 9.4520 1.8716 -3.1257 34 1 3.0953 0.1104 -2.8727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829618908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:38 Heat of formation + Delta-G solvation = -95.307038 kcal Electronic energy + Delta-G solvation = -20244.109383 eV Core-core repulsion = 16863.979481 eV Total energy + Delta-G solvation = -3380.129903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.60232 -40.08749 -38.51223 -36.01216 -35.87516 -32.02650 -31.79699 -30.22108 -28.86829 -26.50630 -24.04998 -23.03847 -22.31216 -21.00435 -20.08300 -18.01082 -17.42296 -16.91253 -16.26922 -15.79213 -15.74020 -14.96475 -14.85710 -14.36401 -14.15140 -14.02761 -13.61645 -13.07141 -12.92321 -12.55809 -12.14974 -11.87984 -11.54096 -11.45581 -11.27967 -11.19581 -10.98334 -10.78014 -10.52355 -10.40559 -10.18006 -10.12549 -9.91388 -8.70144 -8.66867 -8.33873 -6.84985 -5.99816 -3.49885 0.88594 1.57333 2.72600 3.08129 3.26274 3.33461 3.35849 3.96897 4.34520 4.44112 4.96223 5.13068 5.22795 5.37508 5.44784 5.61546 5.72513 5.99475 6.12053 6.23805 6.27525 6.36691 6.39852 6.47137 6.50941 6.58801 6.65527 6.86113 7.05075 7.14613 7.19774 7.45620 7.65269 7.96932 8.29544 8.96077 9.59290 10.15229 11.00767 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.006424 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.180745 B = 4357.311053 C = 5422.965914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 N -0.572 5.572 4 C -0.255 4.255 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.880 5.880 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.161 3.839 13 C -0.004 4.004 14 C -0.125 4.125 15 C -0.037 4.037 16 C -0.198 4.198 17 C 0.530 3.470 18 O -0.516 6.516 19 O -0.513 6.513 20 C 0.158 3.842 21 F -0.126 7.126 22 C -0.173 4.173 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.259 0.741 29 H 0.042 0.958 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.410 0.590 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 -2.028 -5.154 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.290 5.290 4 C -0.384 4.384 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.206 1.206 12 C 0.035 3.965 13 C -0.008 4.008 14 C -0.144 4.144 15 C -0.056 4.056 16 C -0.200 4.200 17 C 0.375 3.625 18 O -0.406 6.406 19 O -0.324 6.324 20 C 0.138 3.862 21 F -0.105 7.105 22 C -0.192 4.192 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.268 0.732 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.500 -2.081 -5.184 8.570 hybrid contribution 1.150 0.187 0.343 1.214 sum 7.649 -1.894 -4.841 9.248 Atomic orbital electron populations 1.22251 0.99224 0.98672 1.02026 1.20934 0.92212 0.86803 0.98613 1.43809 1.73241 1.10402 1.01569 1.19107 1.36452 0.91726 0.91104 0.91757 1.25095 0.97080 0.98539 0.98292 1.69945 1.31321 1.10612 1.40280 0.86494 0.80282 0.79103 0.81820 1.20535 1.21412 1.20577 1.20279 0.86305 1.03199 0.86688 1.21553 1.00975 0.90220 0.88083 1.21204 0.91567 1.01094 1.00566 1.21304 0.97459 0.94142 0.92683 1.18818 0.89463 1.02148 1.09612 1.20739 0.85620 0.79027 0.77072 1.90907 1.83832 1.30349 1.35515 1.84578 1.21502 1.54771 1.71596 1.17694 0.93056 0.84490 0.90950 1.91537 1.94626 1.54123 1.70174 1.21055 0.94262 1.01244 1.02671 0.93694 0.94811 0.92533 0.94724 0.93563 0.93101 0.93974 0.86639 0.84568 0.84450 0.73238 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.24 37.16 0.38 -2.62 16 2 C 0.14 2.75 6.39 -4.04 -0.03 2.72 16 3 N -0.57 -12.85 2.43 -174.61 -0.42 -13.28 16 4 C -0.25 -6.31 9.47 -15.06 -0.14 -6.46 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 6 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 7 N -0.88 -22.79 11.31 55.49 0.63 -22.17 16 8 Si 0.89 19.77 29.61 -169.99 -5.03 14.73 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.16 3.37 5.42 -5.20 -0.03 3.34 16 13 C 0.00 -0.07 5.47 -104.55 -0.57 -0.64 16 14 C -0.13 -2.24 9.67 -39.64 -0.38 -2.62 16 15 C -0.04 -0.59 9.62 -39.17 -0.38 -0.97 16 16 C -0.20 -3.31 5.88 -104.93 -0.62 -3.93 16 17 C 0.53 8.37 8.27 34.54 0.29 8.66 16 18 O -0.52 -9.46 16.13 -19.26 -0.31 -9.77 16 19 O -0.51 -6.06 12.68 -40.57 -0.51 -6.57 16 20 C 0.16 2.78 7.29 -38.94 -0.28 2.50 16 21 F -0.13 -2.32 15.55 2.25 0.04 -2.28 16 22 C -0.17 -2.98 9.66 -39.56 -0.38 -3.36 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.05 0.90 8.02 -51.93 -0.42 0.49 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.04 0.83 8.01 -51.93 -0.42 0.41 16 30 H 0.12 2.71 5.25 -51.93 -0.27 2.44 16 31 H 0.14 2.53 8.06 -52.48 -0.42 2.10 16 32 H 0.14 1.87 7.61 -52.49 -0.40 1.47 16 33 H 0.41 2.78 9.11 45.56 0.42 3.20 16 34 H 0.14 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 304.24 15.07 4.58 4.58 Total: -1.00 -28.44 304.24 -6.44 -34.88 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.17 Total: 3.08 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.23 Total: -3.21 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.20 Total: -35.44 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.83 Total: -16.35 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.44 -6.44 -34.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829618908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.426 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds