Wall clock time and date at job start Mon Mar 30 2020 00:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47070 * 2 1 4 4 C 1.36935 * 119.99879 * 92.36326 * 3 2 1 5 5 H 1.07994 * 120.00039 * 33.92557 * 4 3 2 6 6 C 1.38814 * 119.99639 * 214.19523 * 4 3 2 7 7 N 1.31616 * 120.00415 * 22.65438 * 6 4 3 8 8 Si 1.86809 * 119.99663 * 202.65636 * 6 4 3 9 9 H 1.48497 * 109.47043 * 60.00073 * 8 6 4 10 10 H 1.48497 * 109.46717 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47137 * 299.99918 * 8 6 4 12 12 C 1.46499 * 119.99911 * 272.36501 * 3 2 1 13 13 C 1.50696 * 109.47226 * 269.99842 * 12 3 2 14 14 C 1.38467 * 119.82831 * 269.72532 * 13 12 3 15 15 C 1.37838 * 120.23002 * 179.76256 * 14 13 12 16 16 C 1.39719 * 119.86661 * 0.48605 * 15 14 13 17 17 C 1.47566 * 120.16893 * 179.74335 * 16 15 14 18 18 O 1.21489 * 119.99655 * 180.02562 * 17 16 15 19 19 O 1.34729 * 119.99816 * 0.02667 * 17 16 15 20 20 C 1.39872 * 119.65906 * 359.77250 * 16 15 14 21 21 F 1.35103 * 120.11422 * 179.97438 * 20 16 15 22 22 C 1.38206 * 119.82174 * 89.99826 * 13 12 3 23 23 H 1.08998 * 109.46727 * 60.00430 * 1 2 3 24 24 H 1.09003 * 109.46633 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47371 * 300.00085 * 1 2 3 26 26 H 1.08998 * 109.47371 * 239.99915 * 2 1 3 27 27 H 1.08997 * 109.47197 * 119.99820 * 2 1 3 28 28 H 0.96998 * 120.00043 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46907 * 30.00091 * 12 3 2 30 30 H 1.09000 * 109.47060 * 149.99586 * 12 3 2 31 31 H 1.08007 * 119.88283 * 359.97438 * 14 13 12 32 32 H 1.07992 * 120.06422 * 180.23150 * 15 14 13 33 33 H 0.96707 * 116.99601 * 179.97438 * 19 17 16 34 34 H 1.08004 * 119.94360 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2927 2.0104 1.1849 5 1 2.6836 1.4457 2.0183 6 6 2.0630 3.3731 1.3165 7 7 1.2018 3.9749 0.5238 8 14 2.9763 4.3527 2.6188 9 1 4.4380 4.2571 2.3756 10 1 2.5560 5.7754 2.5533 11 1 2.6611 3.8043 3.9624 12 6 2.2132 2.0893 -1.2677 13 6 3.6183 1.8589 -1.7609 14 6 4.6296 2.7295 -1.3909 15 6 5.9187 2.5238 -1.8333 16 6 6.2038 1.4389 -2.6663 17 6 7.5805 1.2157 -3.1484 18 8 7.8247 0.2716 -3.8729 19 8 8.5664 2.0589 -2.7851 20 6 5.1774 0.5658 -3.0413 21 9 5.4426 -0.4860 -3.8467 22 6 3.8898 0.7830 -2.5849 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.0410 4.9270 0.6161 29 1 1.5032 1.7154 -2.0054 30 1 2.0516 3.1565 -1.1162 31 1 4.4080 3.5706 -0.7506 32 1 6.7060 3.2023 -1.5401 33 1 9.4520 1.8716 -3.1257 34 1 3.0953 0.1104 -2.8727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829618908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:37 Heat of formation + Delta-G solvation = -110.802786 kcal Electronic energy + Delta-G solvation = -20244.781329 eV Core-core repulsion = 16863.979481 eV Total energy + Delta-G solvation = -3380.801849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.00354 -41.31911 -39.90227 -37.54924 -37.09888 -33.81275 -33.23168 -31.61138 -30.46431 -28.10909 -25.70615 -24.41368 -23.70358 -22.40071 -21.65552 -19.19572 -18.94362 -18.39319 -17.69998 -17.16987 -17.06246 -16.64543 -16.26831 -15.85544 -15.69569 -15.51413 -15.10294 -14.52122 -14.22308 -14.14395 -13.65346 -13.34695 -13.03374 -12.92086 -12.83796 -12.62108 -12.41380 -12.38188 -12.23641 -12.00144 -11.83146 -11.63409 -11.51091 -10.53570 -10.04340 -9.74671 -8.63858 -7.84303 -5.39132 -0.45476 0.20899 1.43850 1.50710 1.54196 1.59480 1.96532 2.51392 2.62823 3.07014 3.25995 3.64451 3.80102 3.97723 4.01773 4.28534 4.35158 4.45676 4.70834 4.75898 4.87639 4.89944 4.96368 5.03857 5.11469 5.20315 5.30830 5.50080 5.51972 5.60277 5.73717 5.76702 5.85293 6.46617 6.92533 7.14824 7.82915 8.34772 9.13501 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.006424 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.180745 B = 4357.311053 C = 5422.965914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.587 5.587 4 C -0.263 4.263 5 H 0.055 0.945 6 C -0.025 4.025 7 N -0.908 5.908 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.167 3.833 13 C -0.013 4.013 14 C -0.133 4.133 15 C -0.022 4.022 16 C -0.198 4.198 17 C 0.538 3.462 18 O -0.544 6.544 19 O -0.498 6.498 20 C 0.148 3.852 21 F -0.131 7.131 22 C -0.165 4.165 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.166 0.834 33 H 0.434 0.566 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -2.366 -5.557 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.307 5.307 4 C -0.393 4.393 5 H 0.072 0.928 6 C -0.223 4.223 7 N -0.551 5.551 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.219 1.219 11 H -0.209 1.209 12 C 0.041 3.959 13 C -0.017 4.017 14 C -0.152 4.152 15 C -0.040 4.040 16 C -0.200 4.200 17 C 0.384 3.616 18 O -0.436 6.436 19 O -0.312 6.312 20 C 0.128 3.872 21 F -0.110 7.110 22 C -0.184 4.184 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.297 0.703 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.180 -2.424 -5.601 10.206 hybrid contribution 0.745 0.261 0.390 0.881 sum 8.925 -2.164 -5.211 10.559 Atomic orbital electron populations 1.22122 0.98496 1.00205 1.00252 1.21066 0.92777 0.85735 0.99443 1.43968 1.74169 1.11167 1.01378 1.19188 1.36172 0.92029 0.91928 0.92763 1.25576 0.97682 0.99152 0.99874 1.70050 1.32786 1.10360 1.41922 0.85717 0.79633 0.77627 0.79801 1.19756 1.21860 1.20912 1.20072 0.87903 1.01525 0.86370 1.21299 0.99799 0.91221 0.89348 1.21204 0.92410 1.00859 1.00745 1.21470 0.97190 0.93939 0.91384 1.19063 0.90230 1.01748 1.08988 1.20495 0.85847 0.78837 0.76392 1.90909 1.84300 1.31651 1.36780 1.84513 1.22479 1.53233 1.70932 1.17818 0.93459 0.84722 0.91224 1.91526 1.94657 1.54413 1.70365 1.21070 0.94732 1.00741 1.01855 0.94348 0.91585 0.95287 0.92707 0.93785 0.93585 0.93392 0.89176 0.85578 0.81651 0.70327 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 10.24 71.98 0.74 -4.75 16 2 C 0.13 5.18 6.39 86.38 0.55 5.73 16 3 N -0.59 -26.41 2.43 -706.34 -1.72 -28.12 16 4 C -0.26 -13.17 9.47 84.03 0.80 -12.37 16 5 H 0.05 2.77 7.93 -2.91 -0.02 2.75 16 6 C -0.02 -1.24 4.96 84.86 0.42 -0.82 16 7 N -0.91 -47.97 11.31 21.65 0.24 -47.72 16 8 Si 0.94 40.80 29.61 68.60 2.03 42.84 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.17 7.00 5.42 85.63 0.46 7.46 16 13 C -0.01 -0.47 5.47 -19.82 -0.11 -0.58 16 14 C -0.13 -4.60 9.67 22.23 0.22 -4.38 16 15 C -0.02 -0.64 9.62 22.53 0.22 -0.42 16 16 C -0.20 -6.14 5.88 -20.06 -0.12 -6.26 16 17 C 0.54 15.45 8.27 70.28 0.58 16.03 16 18 O -0.54 -18.74 16.13 19.87 0.32 -18.42 16 19 O -0.50 -9.82 12.68 -56.39 -0.72 -10.54 16 20 C 0.15 4.92 7.29 22.69 0.17 5.09 16 21 F -0.13 -4.60 15.55 44.97 0.70 -3.91 16 22 C -0.16 -5.42 9.66 22.28 0.22 -5.21 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 27 H 0.04 1.69 8.02 -2.39 -0.02 1.67 16 28 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.05 1.89 8.01 -2.38 -0.02 1.87 16 30 H 0.09 4.32 5.25 -2.39 -0.01 4.31 16 31 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.17 3.88 7.61 -2.91 -0.02 3.86 16 33 H 0.43 4.13 9.11 -74.05 -0.67 3.45 16 34 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -60.43 304.24 5.45 -54.98 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.45 Total: 11.37 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.14 Total: -0.48 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.47 Total: -75.85 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.39 Total: -28.95 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.70 Total: -3.91 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.84 kcal Total: -60.43 5.45 -54.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829618908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.826 kcal (2) G-P(sol) polarization free energy of solvation -60.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds