Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00085 * 2 1 4 4 C 1.50702 * 109.46752 * 66.04764 * 3 2 1 5 5 H 1.08001 * 120.00353 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00011 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00150 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00157 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47217 * 120.00215 * 8 6 4 11 11 H 1.48500 * 109.47251 * 240.00114 * 8 6 4 12 12 C 1.46907 * 110.99942 * 236.04859 * 2 1 3 13 13 H 1.08998 * 109.46646 * 63.95137 * 12 2 1 14 14 C 1.50697 * 109.47216 * 183.95127 * 12 2 1 15 15 O 1.20832 * 119.99953 * 0.02562 * 14 12 2 16 16 O 1.34228 * 120.00322 * 180.02562 * 14 12 2 17 17 C 1.50696 * 109.47035 * 303.95352 * 12 2 1 18 18 C 1.38248 * 119.97128 * 139.99775 * 17 12 2 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 12 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38197 * 119.97511 * 359.47283 * 22 20 19 24 24 H 1.09003 * 109.47065 * 183.95228 * 1 2 3 25 25 H 1.08994 * 109.46734 * 303.94767 * 1 2 3 26 26 H 1.08997 * 109.47296 * 63.95422 * 1 2 3 27 27 H 1.08997 * 109.47657 * 186.04410 * 3 2 1 28 28 H 1.09000 * 109.47455 * 306.05179 * 3 2 1 29 29 H 0.97006 * 120.00231 * 180.02562 * 7 6 4 30 30 H 0.96689 * 117.00426 * 180.02562 * 16 14 12 31 31 H 1.08001 * 119.98881 * 0.02562 * 18 17 12 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07994 * 119.98821 * 180.29814 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0747 1.5111 2.0489 6 6 2.0277 3.3490 1.5290 7 7 2.7128 4.0015 0.6156 8 14 1.5839 4.1862 3.1389 9 1 0.8166 3.2436 3.9921 10 1 2.8259 4.5928 3.8442 11 1 0.7569 5.3878 2.8604 12 6 1.9955 -0.7660 -1.1377 13 1 1.7043 -0.2798 -2.0688 14 6 3.4988 -0.8254 -1.0507 15 8 4.0727 -0.2855 -0.1347 16 8 4.2002 -1.4781 -1.9907 17 6 1.4346 -2.1643 -1.1044 18 6 1.0508 -2.7827 -2.2798 19 6 0.5369 -4.0652 -2.2505 20 6 0.4059 -4.7306 -1.0434 21 9 -0.0969 -5.9842 -1.0136 22 6 0.7854 -4.1081 0.1337 23 6 1.3044 -2.8277 0.1015 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3632 0.5739 0.8525 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9274 -0.8308 29 1 2.9880 4.9174 0.7780 30 1 5.1620 -1.4893 -1.8922 31 1 1.1535 -2.2636 -3.2213 32 1 0.2375 -4.5482 -3.1689 33 1 0.6799 -4.6247 1.0764 34 1 1.6049 -2.3438 1.0190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830723426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -91.986088 kcal Electronic energy + Delta-G solvation = -20307.194938 eV Core-core repulsion = 16927.209042 eV Total energy + Delta-G solvation = -3379.985895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91352 -40.34920 -38.84447 -36.58100 -35.37797 -32.76483 -31.26022 -30.98587 -27.56369 -27.14451 -24.19947 -23.05564 -22.45329 -21.42202 -19.80161 -17.77820 -17.58462 -16.68144 -16.50004 -16.19775 -15.63386 -15.51237 -14.81673 -14.63008 -14.16326 -14.06467 -13.51895 -13.35539 -13.14211 -12.95844 -12.44605 -12.05359 -11.85072 -11.71973 -11.41014 -11.15893 -10.97870 -10.89918 -10.60442 -10.52526 -10.12166 -9.67643 -9.14767 -9.06987 -8.53136 -8.35461 -7.46611 -5.99705 -3.99175 1.08446 1.26389 2.65773 3.23202 3.33080 3.40342 3.44685 3.63685 4.24230 4.43126 4.66044 4.75184 4.87570 4.91361 5.33680 5.35957 5.38991 5.56595 5.67306 5.90115 5.98628 6.02682 6.11508 6.19402 6.28781 6.54799 6.66065 6.81189 6.89190 7.21620 7.24405 7.76469 8.04790 8.11087 8.33484 8.50944 9.05995 9.62941 11.11930 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.005193 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.989003 B = 5390.301438 C = 5977.000455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.176 3.824 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.135 3.865 13 H 0.076 0.924 14 C 0.476 3.524 15 O -0.466 6.466 16 O -0.524 6.524 17 C -0.083 4.083 18 C -0.074 4.074 19 C -0.159 4.159 20 C 0.095 3.905 21 F -0.145 7.145 22 C -0.159 4.159 23 C -0.056 4.056 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.016 0.984 27 H 0.061 0.939 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.405 0.595 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -14.960 -6.608 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.246 5.246 3 C 0.052 3.948 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 C 0.025 3.975 13 H 0.094 0.906 14 C 0.315 3.685 15 O -0.349 6.349 16 O -0.336 6.336 17 C -0.084 4.084 18 C -0.092 4.092 19 C -0.178 4.178 20 C 0.076 3.924 21 F -0.123 7.123 22 C -0.178 4.178 23 C -0.074 4.074 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.006 0.994 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.741 -14.877 -5.971 16.264 hybrid contribution 0.118 0.808 0.111 0.824 sum -2.623 -14.070 -5.860 15.465 Atomic orbital electron populations 1.22312 0.87291 1.00293 1.01279 1.62095 1.07441 1.18740 1.36285 1.20177 0.97765 0.79959 0.96932 1.21075 1.34518 0.96729 1.01437 0.91834 1.24956 0.95353 0.97377 0.96939 1.69967 1.38483 1.11365 1.34057 0.86443 0.78101 0.79247 0.83608 1.19679 1.21053 1.21202 1.19931 0.87258 0.93008 0.97282 0.90619 1.23104 0.90796 0.75238 0.79331 1.90793 1.71167 1.40131 1.32794 1.84498 1.25670 1.71228 1.52225 1.19560 1.00433 0.94764 0.93658 1.20888 0.96384 0.93842 0.98090 1.21013 1.03942 0.95944 0.96855 1.17772 0.99451 0.80283 0.94944 1.91479 1.85101 1.38328 1.97412 1.21171 1.02837 0.96422 0.97326 1.21116 0.94848 0.92415 0.99023 0.92992 0.89808 0.96575 0.92104 0.99440 0.93061 0.73700 0.84877 0.84852 0.84746 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 8.95 60.07 0.54 1.20 16 2 N -0.52 -10.78 3.76 -239.14 -0.90 -11.68 16 3 C 0.18 4.56 4.32 -4.98 -0.02 4.54 16 4 C -0.50 -14.03 8.46 -34.44 -0.29 -14.32 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.14 2.34 2.19 -70.02 -0.15 2.18 16 13 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 14 C 0.48 8.56 7.25 36.00 0.26 8.82 16 15 O -0.47 -10.39 14.64 -18.76 -0.27 -10.66 16 16 O -0.52 -7.16 13.34 -39.25 -0.52 -7.68 16 17 C -0.08 -1.20 3.70 -104.62 -0.39 -1.58 16 18 C -0.07 -0.88 9.67 -39.59 -0.38 -1.26 16 19 C -0.16 -1.78 10.03 -39.52 -0.40 -2.18 16 20 C 0.09 1.16 7.30 -39.42 -0.29 0.88 16 21 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 22 C -0.16 -1.97 10.03 -39.51 -0.40 -2.37 16 23 C -0.06 -0.79 8.06 -39.59 -0.32 -1.11 16 24 H 0.05 0.82 6.11 -51.93 -0.32 0.50 16 25 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 1.74 5.21 -51.93 -0.27 1.47 16 28 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.40 3.82 9.10 45.56 0.41 4.24 16 31 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.15 2.27 7.72 -52.49 -0.40 1.87 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -32.76 297.31 -6.36 -39.12 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.97 Total: 1.39 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.93 Total: -3.73 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.16 Total: -37.96 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.80 Total: -18.34 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.76 -6.36 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.865 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds