Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00085 * 2 1 4 4 C 1.50702 * 109.46752 * 66.04764 * 3 2 1 5 5 H 1.08001 * 120.00353 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00011 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00150 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00157 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47217 * 120.00215 * 8 6 4 11 11 H 1.48500 * 109.47251 * 240.00114 * 8 6 4 12 12 C 1.46907 * 110.99942 * 236.04859 * 2 1 3 13 13 H 1.08998 * 109.46646 * 63.95137 * 12 2 1 14 14 C 1.50697 * 109.47216 * 183.95127 * 12 2 1 15 15 O 1.20832 * 119.99953 * 0.02562 * 14 12 2 16 16 O 1.34228 * 120.00322 * 180.02562 * 14 12 2 17 17 C 1.50696 * 109.47035 * 303.95352 * 12 2 1 18 18 C 1.38248 * 119.97128 * 139.99775 * 17 12 2 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 12 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38197 * 119.97511 * 359.47283 * 22 20 19 24 24 H 1.09003 * 109.47065 * 183.95228 * 1 2 3 25 25 H 1.08994 * 109.46734 * 303.94767 * 1 2 3 26 26 H 1.08997 * 109.47296 * 63.95422 * 1 2 3 27 27 H 1.08997 * 109.47657 * 186.04410 * 3 2 1 28 28 H 1.09000 * 109.47455 * 306.05179 * 3 2 1 29 29 H 0.97006 * 120.00231 * 180.02562 * 7 6 4 30 30 H 0.96689 * 117.00426 * 180.02562 * 16 14 12 31 31 H 1.08001 * 119.98881 * 0.02562 * 18 17 12 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07994 * 119.98821 * 180.29814 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0747 1.5111 2.0489 6 6 2.0277 3.3490 1.5290 7 7 2.7128 4.0015 0.6156 8 14 1.5839 4.1862 3.1389 9 1 0.8166 3.2436 3.9921 10 1 2.8259 4.5928 3.8442 11 1 0.7569 5.3878 2.8604 12 6 1.9955 -0.7660 -1.1377 13 1 1.7043 -0.2798 -2.0688 14 6 3.4988 -0.8254 -1.0507 15 8 4.0727 -0.2855 -0.1347 16 8 4.2002 -1.4781 -1.9907 17 6 1.4346 -2.1643 -1.1044 18 6 1.0508 -2.7827 -2.2798 19 6 0.5369 -4.0652 -2.2505 20 6 0.4059 -4.7306 -1.0434 21 9 -0.0969 -5.9842 -1.0136 22 6 0.7854 -4.1081 0.1337 23 6 1.3044 -2.8277 0.1015 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3632 0.5739 0.8525 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9274 -0.8308 29 1 2.9880 4.9174 0.7780 30 1 5.1620 -1.4893 -1.8922 31 1 1.1535 -2.2636 -3.2213 32 1 0.2375 -4.5482 -3.1689 33 1 0.6799 -4.6247 1.0764 34 1 1.6049 -2.3438 1.0190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830723426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -114.234764 kcal Electronic energy + Delta-G solvation = -20308.159713 eV Core-core repulsion = 16927.209042 eV Total energy + Delta-G solvation = -3380.950670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87195 -41.70784 -39.98522 -38.03943 -36.81702 -34.78529 -32.54907 -32.06158 -29.07866 -28.86821 -25.95805 -24.07885 -23.74168 -22.95428 -21.21947 -19.06680 -18.72309 -18.48191 -17.82040 -17.51889 -16.96541 -16.55641 -16.52767 -15.96112 -15.78351 -15.26994 -14.93113 -14.48343 -14.40274 -14.24025 -13.97091 -13.69804 -13.24158 -13.11565 -12.94309 -12.73513 -12.64136 -12.40170 -12.19804 -12.05167 -11.92628 -11.41099 -11.11690 -10.52023 -10.02628 -9.57268 -9.15026 -8.17786 -6.24959 0.06361 0.30891 1.25103 1.40460 1.42259 1.54954 1.97730 2.40957 2.60204 3.16254 3.27098 3.27506 3.54513 3.82512 3.99866 4.13887 4.36478 4.41243 4.47439 4.55585 4.69731 4.95333 5.02536 5.09050 5.13413 5.16603 5.27601 5.34052 5.53292 5.64797 5.69176 5.91004 6.07710 6.26401 6.48866 6.88548 7.08250 7.42187 8.94378 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.005193 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.989003 B = 5390.301438 C = 5977.000455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.513 4.513 5 H 0.063 0.937 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.133 3.867 13 H 0.087 0.913 14 C 0.482 3.518 15 O -0.519 6.519 16 O -0.505 6.505 17 C -0.094 4.094 18 C -0.066 4.066 19 C -0.147 4.147 20 C 0.092 3.908 21 F -0.144 7.144 22 C -0.156 4.156 23 C -0.068 4.068 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.033 0.967 28 H -0.038 1.038 29 H 0.262 0.738 30 H 0.425 0.575 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -16.598 -7.220 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.552 4.552 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.578 5.578 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.023 3.977 13 H 0.105 0.895 14 C 0.323 3.677 15 O -0.407 6.407 16 O -0.318 6.318 17 C -0.095 4.095 18 C -0.084 4.084 19 C -0.166 4.166 20 C 0.073 3.927 21 F -0.123 7.123 22 C -0.175 4.175 23 C -0.087 4.087 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.051 0.949 28 H -0.021 1.021 29 H 0.071 0.929 30 H 0.287 0.713 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.811 -16.561 -6.610 18.234 hybrid contribution 0.476 1.172 0.198 1.281 sum -3.334 -15.388 -6.412 17.001 Atomic orbital electron populations 1.22271 0.85817 1.01788 1.00647 1.61870 1.08783 1.15912 1.38826 1.19753 0.96031 0.82482 0.95129 1.21431 1.34250 0.97234 1.02268 0.91900 1.25878 0.95201 0.98183 1.00582 1.70096 1.39690 1.11786 1.36196 0.85352 0.77898 0.78287 0.79162 1.18621 1.20891 1.20234 1.19991 0.87050 0.94450 0.96172 0.89525 1.23312 0.91359 0.74151 0.78851 1.90778 1.72180 1.42614 1.35105 1.84435 1.27372 1.69739 1.50276 1.19367 1.02042 0.93227 0.94872 1.21077 0.95333 0.94080 0.97956 1.21300 1.02357 0.95309 0.97588 1.17911 0.99237 0.80304 0.95291 1.91487 1.85061 1.38331 1.97428 1.21248 1.02157 0.95683 0.98382 1.20951 0.96151 0.93272 0.98296 0.90106 0.91727 0.96065 0.94886 1.02090 0.92900 0.71345 0.82606 0.81920 0.83318 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 8.95 127.69 1.14 2.68 16 2 N -0.53 -22.32 3.76 -910.51 -3.42 -25.74 16 3 C 0.19 10.33 4.32 85.56 0.37 10.70 16 4 C -0.51 -29.64 8.46 25.60 0.22 -29.42 16 5 H 0.06 3.55 7.12 -2.91 -0.02 3.52 16 6 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 7 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 8 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.13 4.55 2.19 43.42 0.10 4.65 16 13 H 0.09 2.77 8.00 -2.39 -0.02 2.75 16 14 C 0.48 17.42 7.25 71.24 0.52 17.93 16 15 O -0.52 -24.03 14.64 21.95 0.32 -23.71 16 16 O -0.50 -13.09 13.34 -51.40 -0.69 -13.78 16 17 C -0.09 -2.55 3.70 -19.86 -0.07 -2.62 16 18 C -0.07 -1.37 9.67 22.26 0.22 -1.15 16 19 C -0.15 -2.72 10.03 22.31 0.22 -2.50 16 20 C 0.09 1.97 7.30 22.38 0.16 2.13 16 21 F -0.14 -3.16 17.27 44.97 0.78 -2.39 16 22 C -0.16 -3.55 10.03 22.31 0.22 -3.33 16 23 C -0.07 -1.85 8.06 22.26 0.18 -1.67 16 24 H 0.08 2.46 6.11 -2.39 -0.01 2.44 16 25 H 0.06 2.58 6.76 -2.39 -0.02 2.56 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.03 1.99 5.21 -2.39 -0.01 1.97 16 28 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 29 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.43 7.42 9.10 -74.06 -0.67 6.75 16 31 H 0.16 2.50 8.04 -2.91 -0.02 2.48 16 32 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.13 3.96 7.72 -2.91 -0.02 3.94 16 Total: -1.00 -72.39 297.31 3.50 -68.89 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.46 Total: 9.03 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 3.73 Total: -2.20 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.14 Total: -83.21 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.36 Total: -37.48 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.39 3.50 -68.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.344 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds