Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.50697 * 109.47095 * 293.94952 * 3 2 1 5 5 H 1.07998 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99832 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47156 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47068 * 210.00655 * 8 6 4 11 11 H 1.48505 * 109.46908 * 330.00217 * 8 6 4 12 12 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 13 13 H 1.08998 * 109.47116 * 296.04350 * 12 2 1 14 14 C 1.50704 * 109.46920 * 176.04354 * 12 2 1 15 15 O 1.20825 * 119.99717 * 0.02562 * 14 12 2 16 16 O 1.34230 * 120.00288 * 179.97438 * 14 12 2 17 17 C 1.50702 * 109.47561 * 56.04986 * 12 2 1 18 18 C 1.38251 * 119.97360 * 39.71421 * 17 12 2 19 19 C 1.38200 * 120.02526 * 179.77213 * 18 17 12 20 20 C 1.38456 * 119.96909 * 0.51079 * 19 18 17 21 21 F 1.35109 * 120.02254 * 179.76709 * 20 19 18 22 22 C 1.38453 * 119.95447 * 359.74879 * 20 19 18 23 23 C 1.38200 * 119.97534 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 27 27 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 28 28 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 29 29 H 0.96997 * 120.00039 * 180.02562 * 7 6 4 30 30 H 0.96696 * 117.00255 * 179.97438 * 16 14 12 31 31 H 1.07997 * 119.98388 * 0.03349 * 18 17 12 32 32 H 1.07997 * 120.01228 * 180.26128 * 19 18 17 33 33 H 1.08000 * 120.01458 * 179.97438 * 22 20 19 34 34 H 1.07997 * 119.99383 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5820 4.1872 -3.1377 9 1 0.2695 4.8672 -2.9954 10 1 2.6241 5.1886 -3.4790 11 1 1.4987 3.1716 -4.2180 12 6 1.9954 -0.7660 1.1376 13 1 1.7043 -0.2799 2.0688 14 6 3.4987 -0.8256 1.0506 15 8 4.0727 -0.2850 0.1351 16 8 4.2002 -1.4783 1.9906 17 6 1.4346 -2.1644 1.1043 18 6 1.2989 -2.8256 -0.1023 19 6 0.7892 -4.1098 -0.1336 20 6 0.4045 -4.7301 1.0429 21 9 -0.0983 -5.9838 1.0131 22 6 0.5359 -4.0650 2.2501 23 6 1.0512 -2.7830 2.2797 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9858 4.9182 -0.7766 30 1 5.1620 -1.4896 1.8920 31 1 1.5953 -2.3399 -1.0202 32 1 0.6872 -4.6276 -1.0758 33 1 0.2358 -4.5478 3.1684 34 1 1.1542 -2.2641 3.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830723427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -91.807913 kcal Electronic energy + Delta-G solvation = -20307.163520 eV Core-core repulsion = 16927.185351 eV Total energy + Delta-G solvation = -3379.978169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91316 -40.35065 -38.84740 -36.57990 -35.37776 -32.76319 -31.26027 -30.98465 -27.56693 -27.14378 -24.19587 -23.05595 -22.45252 -21.42243 -19.79981 -17.77864 -17.58316 -16.67978 -16.49803 -16.19896 -15.63718 -15.51027 -14.81584 -14.62998 -14.16899 -14.06309 -13.51931 -13.35821 -13.14451 -12.95626 -12.44813 -12.04414 -11.85380 -11.71711 -11.39881 -11.16122 -10.98314 -10.88114 -10.63966 -10.52026 -10.11709 -9.67912 -9.14980 -9.07154 -8.52919 -8.35254 -7.46550 -5.99331 -3.98886 1.08357 1.26296 2.65895 3.23237 3.33759 3.40016 3.44426 3.63628 4.24185 4.43252 4.66020 4.75115 4.87495 4.91368 5.33650 5.36160 5.39075 5.56570 5.67358 5.89888 5.98563 6.01310 6.11455 6.20609 6.28822 6.54760 6.65461 6.81178 6.89126 7.21686 7.24168 7.76392 8.04802 8.11325 8.33618 8.51145 9.05960 9.63165 11.12279 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.005193 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.130709 B = 5390.107495 C = 5977.204382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.520 5.520 3 C 0.176 3.824 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.135 3.865 13 H 0.076 0.924 14 C 0.476 3.524 15 O -0.465 6.465 16 O -0.524 6.524 17 C -0.083 4.083 18 C -0.056 4.056 19 C -0.159 4.159 20 C 0.095 3.905 21 F -0.145 7.145 22 C -0.159 4.159 23 C -0.074 4.074 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.017 0.983 27 H -0.012 1.012 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.405 0.595 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.695 -14.966 6.615 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.246 5.246 3 C 0.052 3.948 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.025 3.975 13 H 0.094 0.906 14 C 0.315 3.685 15 O -0.349 6.349 16 O -0.336 6.336 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.178 4.178 20 C 0.076 3.924 21 F -0.123 7.123 22 C -0.178 4.178 23 C -0.092 4.092 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.006 0.994 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.263 0.737 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.724 -14.881 5.978 16.266 hybrid contribution 0.098 0.808 -0.115 0.822 sum -2.627 -14.072 5.863 15.469 Atomic orbital electron populations 1.22308 0.87296 0.99931 1.01593 1.62102 1.07436 1.18766 1.36269 1.20175 0.97764 0.79926 0.96913 1.21032 1.34579 0.96738 1.01468 0.91904 1.24952 0.95334 0.97373 0.96939 1.69954 1.38428 1.11353 1.34150 0.86497 0.77867 0.79218 0.83811 1.20829 1.21302 1.19786 1.19929 0.87271 0.92988 0.97304 0.90623 1.23102 0.90795 0.75244 0.79326 1.90791 1.71166 1.40103 1.32816 1.84500 1.25669 1.71236 1.52218 1.19563 1.00413 0.94800 0.93649 1.21122 0.94866 0.92385 0.99029 1.21169 1.02870 0.96372 0.97343 1.17770 0.99423 0.80302 0.94952 1.91481 1.85096 1.38334 1.97412 1.21013 1.03926 0.95970 0.96845 1.20888 0.96372 0.93853 0.98099 0.89950 0.93001 0.96470 0.99446 0.92102 0.93006 0.73700 0.83464 0.84744 0.84849 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 8.95 60.07 0.54 1.21 16 2 N -0.52 -10.78 3.75 -239.14 -0.90 -11.68 16 3 C 0.18 4.58 4.32 -4.98 -0.02 4.56 16 4 C -0.50 -14.06 8.52 -34.44 -0.29 -14.36 16 5 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.14 2.33 2.19 -70.01 -0.15 2.18 16 13 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 14 C 0.48 8.56 7.25 36.01 0.26 8.83 16 15 O -0.47 -10.39 14.64 -18.75 -0.27 -10.67 16 16 O -0.52 -7.16 13.34 -39.26 -0.52 -7.68 16 17 C -0.08 -1.20 3.65 -104.61 -0.38 -1.58 16 18 C -0.06 -0.79 8.08 -39.59 -0.32 -1.11 16 19 C -0.16 -1.97 10.03 -39.51 -0.40 -2.36 16 20 C 0.09 1.16 7.30 -39.42 -0.29 0.88 16 21 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 22 C -0.16 -1.78 10.03 -39.52 -0.40 -2.18 16 23 C -0.07 -0.88 9.67 -39.59 -0.38 -1.26 16 24 H 0.08 1.61 6.86 -51.93 -0.36 1.26 16 25 H 0.05 0.81 6.01 -51.93 -0.31 0.50 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 28 H 0.06 1.74 5.21 -51.93 -0.27 1.47 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.40 3.82 9.10 45.56 0.41 4.24 16 31 H 0.15 2.27 7.71 -52.49 -0.40 1.87 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -32.77 297.30 -6.36 -39.13 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -2.96 Total: 1.38 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.93 Total: -3.72 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.16 Total: -37.98 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.80 Total: -18.34 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.77 -6.36 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.682 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds