Wall clock time and date at job start Mon Mar 30 2020 00:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.50697 * 109.47095 * 293.94952 * 3 2 1 5 5 H 1.07998 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99832 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47156 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47068 * 210.00655 * 8 6 4 11 11 H 1.48505 * 109.46908 * 330.00217 * 8 6 4 12 12 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 13 13 H 1.08998 * 109.47116 * 296.04350 * 12 2 1 14 14 C 1.50704 * 109.46920 * 176.04354 * 12 2 1 15 15 O 1.20825 * 119.99717 * 0.02562 * 14 12 2 16 16 O 1.34230 * 120.00288 * 179.97438 * 14 12 2 17 17 C 1.50702 * 109.47561 * 56.04986 * 12 2 1 18 18 C 1.38251 * 119.97360 * 39.71421 * 17 12 2 19 19 C 1.38200 * 120.02526 * 179.77213 * 18 17 12 20 20 C 1.38456 * 119.96909 * 0.51079 * 19 18 17 21 21 F 1.35109 * 120.02254 * 179.76709 * 20 19 18 22 22 C 1.38453 * 119.95447 * 359.74879 * 20 19 18 23 23 C 1.38200 * 119.97534 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 27 27 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 28 28 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 29 29 H 0.96997 * 120.00039 * 180.02562 * 7 6 4 30 30 H 0.96696 * 117.00255 * 179.97438 * 16 14 12 31 31 H 1.07997 * 119.98388 * 0.03349 * 18 17 12 32 32 H 1.07997 * 120.01228 * 180.26128 * 19 18 17 33 33 H 1.08000 * 120.01458 * 179.97438 * 22 20 19 34 34 H 1.07997 * 119.99383 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5820 4.1872 -3.1377 9 1 0.2695 4.8672 -2.9954 10 1 2.6241 5.1886 -3.4790 11 1 1.4987 3.1716 -4.2180 12 6 1.9954 -0.7660 1.1376 13 1 1.7043 -0.2799 2.0688 14 6 3.4987 -0.8256 1.0506 15 8 4.0727 -0.2850 0.1351 16 8 4.2002 -1.4783 1.9906 17 6 1.4346 -2.1644 1.1043 18 6 1.2989 -2.8256 -0.1023 19 6 0.7892 -4.1098 -0.1336 20 6 0.4045 -4.7301 1.0429 21 9 -0.0983 -5.9838 1.0131 22 6 0.5359 -4.0650 2.2501 23 6 1.0512 -2.7830 2.2797 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9858 4.9182 -0.7766 30 1 5.1620 -1.4896 1.8920 31 1 1.5953 -2.3399 -1.0202 32 1 0.6872 -4.6276 -1.0758 33 1 0.2358 -4.5478 3.1684 34 1 1.1542 -2.2641 3.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830723427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:05 Heat of formation + Delta-G solvation = -114.065861 kcal Electronic energy + Delta-G solvation = -20308.128697 eV Core-core repulsion = 16927.185351 eV Total energy + Delta-G solvation = -3380.943346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87115 -41.70942 -39.98890 -38.03825 -36.81700 -34.78514 -32.54843 -32.06121 -29.07791 -28.87241 -25.95460 -24.07974 -23.74028 -22.95584 -21.21747 -19.06685 -18.72225 -18.48018 -17.81895 -17.51805 -16.96907 -16.55742 -16.52718 -15.96057 -15.78763 -15.26971 -14.93446 -14.48232 -14.40215 -14.24298 -13.96084 -13.70304 -13.22912 -13.12245 -12.95252 -12.70359 -12.64147 -12.42947 -12.20223 -12.04664 -11.92769 -11.42610 -11.11177 -10.51524 -10.02715 -9.57196 -9.15179 -8.17561 -6.24868 0.06293 0.30838 1.25181 1.40618 1.43084 1.54041 1.97739 2.41053 2.60213 3.16383 3.26947 3.27487 3.54422 3.82461 3.99846 4.13885 4.36461 4.41228 4.47248 4.55333 4.69979 4.95262 5.02568 5.08678 5.13029 5.16591 5.27546 5.34029 5.53222 5.64708 5.69165 5.90942 6.07629 6.26304 6.48909 6.88365 7.08298 7.42259 8.94402 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.005193 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.130709 B = 5390.107495 C = 5977.204382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.515 4.515 5 H 0.063 0.937 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.133 3.867 13 H 0.087 0.913 14 C 0.482 3.518 15 O -0.519 6.519 16 O -0.505 6.505 17 C -0.094 4.094 18 C -0.068 4.068 19 C -0.156 4.156 20 C 0.092 3.908 21 F -0.144 7.144 22 C -0.147 4.147 23 C -0.066 4.066 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.019 0.981 27 H -0.039 1.039 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.425 0.575 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -16.599 7.225 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.023 3.977 13 H 0.105 0.895 14 C 0.323 3.677 15 O -0.407 6.407 16 O -0.318 6.318 17 C -0.095 4.095 18 C -0.087 4.087 19 C -0.175 4.175 20 C 0.073 3.927 21 F -0.123 7.123 22 C -0.165 4.165 23 C -0.084 4.084 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.038 0.962 27 H -0.021 1.021 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.287 0.713 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.802 -16.558 6.616 18.232 hybrid contribution 0.458 1.169 -0.202 1.272 sum -3.344 -15.389 6.414 17.004 Atomic orbital electron populations 1.22269 0.85816 1.01572 1.00814 1.61872 1.08780 1.15932 1.38811 1.19751 0.96033 0.82453 0.95110 1.21398 1.34332 0.97258 1.02317 0.91920 1.25877 0.95173 0.98177 1.00589 1.70087 1.39640 1.11739 1.36282 0.85402 0.77940 0.78046 0.79325 1.19510 1.21053 1.19106 1.19990 0.87063 0.94434 0.96194 0.89527 1.23311 0.91359 0.74156 0.78845 1.90776 1.72180 1.42588 1.35130 1.84437 1.27372 1.69746 1.50267 1.19369 1.02030 0.93262 0.94862 1.20956 0.96175 0.93239 0.98298 1.21246 1.02196 0.95628 0.98399 1.17909 0.99206 0.80325 0.95299 1.91488 1.85056 1.38336 1.97428 1.21301 1.02339 0.95331 0.97578 1.21077 0.95315 0.94089 0.97965 0.91725 0.90032 0.96201 1.02104 0.94882 0.92895 0.71344 0.85522 0.83319 0.81914 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 8.95 127.69 1.14 2.70 16 2 N -0.53 -22.33 3.75 -910.49 -3.42 -25.75 16 3 C 0.19 10.36 4.32 85.56 0.37 10.73 16 4 C -0.51 -29.74 8.52 25.60 0.22 -29.52 16 5 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 6 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 7 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 8 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.13 4.55 2.19 43.42 0.10 4.64 16 13 H 0.09 2.77 8.00 -2.39 -0.02 2.75 16 14 C 0.48 17.42 7.25 71.24 0.52 17.94 16 15 O -0.52 -24.04 14.64 21.97 0.32 -23.72 16 16 O -0.50 -13.09 13.34 -51.41 -0.69 -13.78 16 17 C -0.09 -2.55 3.65 -19.86 -0.07 -2.62 16 18 C -0.07 -1.85 8.08 22.26 0.18 -1.67 16 19 C -0.16 -3.55 10.03 22.31 0.22 -3.33 16 20 C 0.09 1.97 7.30 22.37 0.16 2.13 16 21 F -0.14 -3.16 17.27 44.97 0.78 -2.38 16 22 C -0.15 -2.72 10.03 22.31 0.22 -2.49 16 23 C -0.07 -1.36 9.67 22.26 0.22 -1.15 16 24 H 0.06 2.56 6.86 -2.39 -0.02 2.54 16 25 H 0.08 2.47 6.01 -2.39 -0.01 2.45 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 28 H 0.03 1.99 5.21 -2.39 -0.01 1.98 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.43 7.42 9.10 -74.06 -0.67 6.75 16 31 H 0.13 3.96 7.71 -2.91 -0.02 3.94 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.16 2.50 8.04 -2.91 -0.02 2.47 16 Total: -1.00 -72.43 297.30 3.51 -68.92 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.46 Total: 9.05 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 3.74 Total: -2.22 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.13 Total: -83.24 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.36 Total: -37.50 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.43 3.51 -68.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.144 kcal (2) G-P(sol) polarization free energy of solvation -72.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds