Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99990 * 2 1 4 4 C 1.50702 * 109.47163 * 66.04178 * 3 2 1 5 5 H 1.08003 * 119.99843 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00238 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99515 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00152 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47198 * 90.00513 * 8 6 4 10 10 H 1.48502 * 109.47017 * 210.00317 * 8 6 4 11 11 H 1.48499 * 109.47349 * 330.00049 * 8 6 4 12 12 C 1.46897 * 111.00102 * 236.04815 * 2 1 3 13 13 H 1.08989 * 109.47330 * 63.95151 * 12 2 1 14 14 C 1.50699 * 109.47201 * 183.95361 * 12 2 1 15 15 O 1.20828 * 120.00216 * 359.97438 * 14 12 2 16 16 O 1.34229 * 120.00094 * 179.97438 * 14 12 2 17 17 C 1.50699 * 109.46802 * 303.95018 * 12 2 1 18 18 C 1.38225 * 120.01608 * 340.00187 * 17 12 2 19 19 C 1.38219 * 120.02950 * 179.72497 * 18 17 12 20 20 C 1.38274 * 120.04966 * 0.02562 * 19 18 17 21 21 C 1.38182 * 120.02410 * 0.02562 * 20 19 18 22 22 C 1.38440 * 120.01197 * 159.72763 * 17 12 2 23 23 F 1.35103 * 120.02569 * 0.24883 * 22 17 12 24 24 H 1.09003 * 109.47139 * 183.95612 * 1 2 3 25 25 H 1.09003 * 109.46985 * 303.95533 * 1 2 3 26 26 H 1.08998 * 109.46989 * 63.95503 * 1 2 3 27 27 H 1.08993 * 109.47519 * 186.04570 * 3 2 1 28 28 H 1.09001 * 109.46663 * 306.04758 * 3 2 1 29 29 H 0.97000 * 119.99851 * 179.97438 * 7 6 4 30 30 H 0.96700 * 116.99779 * 179.97438 * 16 14 12 31 31 H 1.07998 * 119.98144 * 359.74112 * 18 17 12 32 32 H 1.07990 * 119.97712 * 180.02562 * 19 18 17 33 33 H 1.07994 * 119.98453 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.01141 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0275 3.3492 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5836 4.1865 3.1386 9 1 2.6605 3.9495 4.1333 10 1 1.4318 5.6463 2.9118 11 1 0.3057 3.6296 3.6503 12 6 1.9954 -0.7659 -1.1376 13 1 1.7044 -0.2799 -2.0687 14 6 3.4987 -0.8254 -1.0505 15 8 4.0728 -0.2848 -0.1350 16 8 4.2001 -1.4790 -1.9900 17 6 1.4346 -2.1643 -1.1042 18 6 0.9189 -2.6745 0.0724 19 6 0.3993 -3.9550 0.1020 20 6 0.3952 -4.7272 -1.0450 21 6 0.9113 -4.2197 -2.2221 22 6 1.4307 -2.9364 -2.2533 23 9 1.9341 -2.4386 -3.4039 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9273 -0.8309 29 1 2.9873 4.9177 0.7773 30 1 5.1620 -1.4894 -1.8918 31 1 0.9216 -2.0722 0.9688 32 1 -0.0039 -4.3526 1.0215 33 1 -0.0106 -5.7277 -1.0206 34 1 0.9084 -4.8232 -3.1177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830723460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = -84.039859 kcal Electronic energy + Delta-G solvation = -20727.166123 eV Core-core repulsion = 17347.524802 eV Total energy + Delta-G solvation = -3379.641321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.73199 -40.24796 -38.84260 -36.63435 -35.37429 -32.84679 -31.31677 -30.55559 -27.86718 -27.14682 -24.21019 -22.70433 -22.54659 -21.36956 -19.79280 -17.71576 -17.50152 -16.57037 -16.42286 -16.24484 -15.72278 -15.24427 -14.94676 -14.64538 -14.11948 -13.89131 -13.76603 -13.30098 -12.91526 -12.60101 -12.46458 -12.05004 -11.88579 -11.54255 -11.46132 -11.16620 -11.01149 -10.86647 -10.58150 -10.48582 -10.09412 -9.68378 -9.15878 -8.77721 -8.58584 -8.34369 -7.46775 -5.97871 -3.97647 1.13498 1.26198 2.70228 3.28075 3.35579 3.41038 3.43607 3.68903 4.30887 4.43840 4.64921 4.70010 4.90329 5.05838 5.28177 5.38413 5.42364 5.58289 5.71732 5.88178 5.99312 6.10599 6.14449 6.20132 6.44255 6.46545 6.65041 6.85774 6.93486 7.21977 7.26791 7.77055 8.06111 8.12604 8.37596 8.52655 9.06936 9.64136 11.13814 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.005854 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.045913 B = 4781.611414 C = 5358.873801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.519 5.519 3 C 0.177 3.823 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.137 3.863 13 H 0.078 0.922 14 C 0.478 3.522 15 O -0.466 6.466 16 O -0.520 6.520 17 C -0.117 4.117 18 C -0.058 4.058 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.166 4.166 22 C 0.118 3.882 23 F -0.131 7.131 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.016 0.984 27 H 0.062 0.938 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.404 0.596 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -16.560 -5.465 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.245 5.245 3 C 0.053 3.947 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.026 3.974 13 H 0.096 0.904 14 C 0.317 3.683 15 O -0.349 6.349 16 O -0.332 6.332 17 C -0.118 4.118 18 C -0.076 4.076 19 C -0.160 4.160 20 C -0.108 4.108 21 C -0.185 4.185 22 C 0.098 3.902 23 F -0.109 7.109 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.262 0.738 31 H 0.172 0.828 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.712 -16.400 -4.887 17.511 hybrid contribution 0.327 1.112 -0.149 1.169 sum -3.385 -15.288 -5.036 16.448 Atomic orbital electron populations 1.22532 0.87456 1.00671 1.01485 1.62068 1.07351 1.18828 1.36268 1.20169 0.97809 0.79810 0.96958 1.21028 1.34674 0.96761 1.01391 0.91866 1.24963 0.95362 0.97363 0.96956 1.69964 1.38398 1.11417 1.34048 0.86479 0.78762 0.78356 0.83659 1.20652 1.21400 1.19895 1.19772 0.87513 0.92704 0.97367 0.90448 1.23000 0.90671 0.75305 0.79289 1.90782 1.71121 1.40227 1.32799 1.84545 1.25532 1.71043 1.52080 1.19619 1.03413 0.95359 0.93435 1.21298 0.93551 0.94675 0.98041 1.21245 1.01621 0.94421 0.98695 1.21008 0.98024 0.99758 0.92045 1.21037 1.02977 0.94413 1.00034 1.17546 0.97876 0.92977 0.81803 1.91515 1.84796 1.87617 1.47015 0.92346 0.89623 0.96551 0.92072 0.99403 0.92995 0.73784 0.82843 0.85293 0.85341 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 8.51 60.06 0.51 1.00 16 2 N -0.52 -11.22 3.59 -239.15 -0.86 -12.07 16 3 C 0.18 4.72 4.32 -4.97 -0.02 4.70 16 4 C -0.50 -14.26 8.46 -34.44 -0.29 -14.55 16 5 H 0.06 1.75 7.12 -52.48 -0.37 1.38 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.14 2.60 1.93 -70.02 -0.13 2.46 16 13 H 0.08 1.48 7.94 -51.94 -0.41 1.07 16 14 C 0.48 9.35 7.26 36.01 0.26 9.61 16 15 O -0.47 -10.93 14.64 -18.75 -0.27 -11.21 16 16 O -0.52 -8.02 12.42 -39.25 -0.49 -8.50 16 17 C -0.12 -1.85 4.44 -104.55 -0.46 -2.31 16 18 C -0.06 -0.82 7.24 -39.59 -0.29 -1.11 16 19 C -0.14 -1.58 10.04 -39.58 -0.40 -1.98 16 20 C -0.09 -0.91 10.04 -39.59 -0.40 -1.31 16 21 C -0.17 -1.90 10.03 -39.51 -0.40 -2.29 16 22 C 0.12 1.69 6.98 -39.42 -0.28 1.42 16 23 F -0.13 -2.01 15.97 2.25 0.04 -1.97 16 24 H 0.06 0.91 4.97 -51.93 -0.26 0.66 16 25 H 0.09 1.70 6.76 -51.93 -0.35 1.35 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 1.80 5.21 -51.93 -0.27 1.53 16 28 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.40 4.37 9.10 45.56 0.41 4.79 16 31 H 0.15 2.37 6.42 -52.49 -0.34 2.03 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -33.67 291.75 -6.30 -39.97 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.84 Total: 1.95 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.99 Total: -2.87 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.12 Total: -38.75 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.76 Total: -19.71 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.67 -6.30 -39.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.069 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds