Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00174 * 2 1 4 4 C 1.50701 * 109.46828 * 66.05327 * 3 2 1 5 5 H 1.07999 * 119.99807 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00200 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99631 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00393 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46987 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47489 * 119.99707 * 8 6 4 11 11 H 1.48500 * 109.47330 * 240.00259 * 8 6 4 12 12 C 1.46904 * 110.99720 * 236.04817 * 2 1 3 13 13 H 1.08997 * 109.46977 * 67.02179 * 12 2 1 14 14 C 1.50698 * 109.47466 * 307.02219 * 12 2 1 15 15 O 1.20825 * 119.99521 * 330.82113 * 14 12 2 16 16 O 1.34226 * 120.00358 * 150.82063 * 14 12 2 17 17 C 1.50706 * 109.46925 * 187.02224 * 12 2 1 18 18 C 1.38216 * 120.01386 * 26.60536 * 17 12 2 19 19 C 1.38221 * 120.02241 * 179.97438 * 18 17 12 20 20 C 1.38265 * 120.05481 * 0.02562 * 19 18 17 21 21 C 1.38182 * 120.02551 * 0.27513 * 20 19 18 22 22 C 1.38444 * 120.00785 * 206.58820 * 17 12 2 23 23 F 1.35097 * 120.03060 * 0.04227 * 22 17 12 24 24 H 1.09003 * 109.46924 * 178.13133 * 1 2 3 25 25 H 1.09003 * 109.46859 * 298.12619 * 1 2 3 26 26 H 1.08995 * 109.47112 * 58.12731 * 1 2 3 27 27 H 1.09001 * 109.46698 * 186.04665 * 3 2 1 28 28 H 1.08989 * 109.46991 * 306.05038 * 3 2 1 29 29 H 0.96995 * 119.99850 * 180.02562 * 7 6 4 30 30 H 0.96696 * 116.99874 * 179.97438 * 16 14 12 31 31 H 1.07995 * 119.98880 * 0.02562 * 18 17 12 32 32 H 1.08003 * 119.97537 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.98905 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.01074 * 179.72205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0269 3.3493 1.5287 7 7 2.7120 4.0018 0.6151 8 14 1.5821 4.1870 3.1379 9 1 0.8140 3.2446 3.9908 10 1 2.8235 4.5945 3.8436 11 1 0.7545 5.3879 2.8587 12 6 1.9954 -0.7660 -1.1377 13 1 1.7510 -0.2509 -2.0666 14 6 1.3767 -2.1401 -1.1475 15 8 1.0292 -2.6535 -0.1104 16 8 1.2118 -2.7936 -2.3082 17 6 3.4919 -0.8898 -1.0105 18 6 4.0863 -0.8402 0.2364 19 6 5.4588 -0.9542 0.3533 20 6 6.2388 -1.1175 -0.7766 21 6 5.6474 -1.1611 -2.0247 22 6 4.2718 -1.0535 -2.1426 23 9 3.6921 -1.1016 -3.3619 24 1 -0.3633 -1.0272 -0.0335 25 1 -0.3633 0.4845 0.9063 26 1 -0.3633 0.5426 -0.8727 27 1 3.0797 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8308 29 1 2.9866 4.9179 0.7771 30 1 0.8109 -3.6725 -2.2641 31 1 3.4780 -0.7132 1.1196 32 1 5.9225 -0.9150 1.3279 33 1 7.3112 -1.2060 -0.6841 34 1 6.2574 -1.2841 -2.9075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830723461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -115.821967 kcal Electronic energy + Delta-G solvation = -20794.665125 eV Core-core repulsion = 17413.645628 eV Total energy + Delta-G solvation = -3381.019497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.91782 -41.76453 -39.95293 -38.15411 -37.02758 -34.78754 -32.91285 -31.47931 -29.79894 -28.32081 -26.49834 -23.87608 -23.68029 -23.09802 -21.19406 -19.31260 -18.70794 -18.61042 -17.67862 -17.46890 -17.30266 -16.56022 -16.48943 -16.26074 -15.67560 -15.32073 -14.99103 -14.94954 -14.13089 -14.10159 -13.93237 -13.78310 -13.24053 -13.14101 -12.95487 -12.67592 -12.66335 -12.52180 -12.27210 -12.04566 -11.98163 -11.61629 -11.29616 -10.62865 -9.85223 -9.64042 -9.27481 -8.20275 -6.29636 0.09456 0.30507 1.04993 1.42089 1.43276 1.56264 1.85450 2.41452 2.65913 3.04227 3.14097 3.29948 3.50608 3.89442 3.94415 4.18577 4.22393 4.37921 4.40709 4.50524 4.55473 4.90595 4.94692 5.09814 5.13355 5.18749 5.21502 5.44286 5.46972 5.52973 5.63015 5.94226 5.98391 6.10053 6.38745 6.83645 6.93630 7.39251 8.91127 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.007226 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.280032 B = 3873.913191 C = 4715.776244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.521 5.521 3 C 0.212 3.788 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.132 3.868 13 H 0.065 0.935 14 C 0.499 3.501 15 O -0.515 6.515 16 O -0.505 6.505 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.158 4.158 22 C 0.090 3.910 23 F -0.141 7.141 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.025 0.975 28 H -0.038 1.038 29 H 0.265 0.735 30 H 0.430 0.570 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 -12.153 -5.038 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.247 5.247 3 C 0.086 3.914 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.022 3.978 13 H 0.083 0.917 14 C 0.341 3.659 15 O -0.403 6.403 16 O -0.318 6.318 17 C -0.141 4.141 18 C -0.080 4.080 19 C -0.156 4.156 20 C -0.093 4.093 21 C -0.177 4.177 22 C 0.070 3.930 23 F -0.120 7.120 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.043 0.957 28 H -0.020 1.020 29 H 0.073 0.927 30 H 0.292 0.708 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.191 0.809 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.064 -11.997 -4.439 13.758 hybrid contribution -1.174 0.687 -0.339 1.402 sum 3.889 -11.310 -4.778 12.879 Atomic orbital electron populations 1.22359 0.86908 1.00999 1.01312 1.61987 1.08557 1.16150 1.37973 1.19513 0.95047 0.81424 0.95384 1.21371 1.35102 0.97454 1.01966 0.91841 1.25815 0.94941 0.97867 1.00444 1.70089 1.39081 1.11866 1.35928 0.85365 0.78093 0.78156 0.79190 1.18920 1.20260 1.20636 1.19813 0.92408 0.89812 0.95775 0.91749 1.22832 0.74529 0.87372 0.81207 1.90676 1.47121 1.67991 1.34465 1.84528 1.76068 1.36804 1.34444 1.19419 0.92762 1.07666 0.94225 1.21154 0.96119 0.94239 0.96536 1.21585 0.92610 1.00366 1.01032 1.21498 1.01914 0.95490 0.90371 1.21425 0.91317 1.03942 1.00993 1.17797 0.92502 1.03722 0.78981 1.91464 1.85192 1.93895 1.41459 0.91248 0.90813 0.96326 0.95658 1.02022 0.92656 0.70813 0.85519 0.83033 0.80897 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.33 8.94 127.69 1.14 2.47 16 2 N -0.52 -23.37 3.38 -910.50 -3.08 -26.45 16 3 C 0.21 11.15 4.23 85.56 0.36 11.51 16 4 C -0.52 -28.98 8.54 25.60 0.22 -28.76 16 5 H 0.06 3.50 7.10 -2.91 -0.02 3.48 16 6 C 0.01 0.44 5.46 84.65 0.46 0.90 16 7 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 8 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.13 5.21 1.98 43.42 0.09 5.30 16 13 H 0.06 2.62 7.74 -2.39 -0.02 2.60 16 14 C 0.50 17.34 6.34 71.24 0.45 17.79 16 15 O -0.51 -19.88 15.91 21.97 0.35 -19.53 16 16 O -0.50 -13.31 13.42 -51.37 -0.69 -14.00 16 17 C -0.14 -5.20 4.11 -19.82 -0.08 -5.28 16 18 C -0.06 -2.28 7.95 22.26 0.18 -2.10 16 19 C -0.14 -3.90 10.04 22.27 0.22 -3.68 16 20 C -0.08 -1.72 10.04 22.26 0.22 -1.50 16 21 C -0.16 -4.02 10.03 22.31 0.22 -3.80 16 22 C 0.09 2.94 7.24 22.38 0.16 3.10 16 23 F -0.14 -4.70 16.54 44.97 0.74 -3.95 16 24 H 0.07 2.63 5.74 -2.39 -0.01 2.62 16 25 H 0.07 3.16 6.91 -2.39 -0.02 3.14 16 26 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.03 1.41 6.03 -2.39 -0.01 1.40 16 28 H -0.04 -2.20 8.11 -2.39 -0.02 -2.21 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.43 6.53 9.10 -74.06 -0.67 5.85 16 31 H 0.13 5.27 7.22 -2.91 -0.02 5.24 16 32 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -68.91 296.86 3.75 -65.17 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.46 Total: 11.59 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 3.65 Total: -4.05 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.80 Total: -80.94 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.34 Total: -33.53 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.74 Total: -3.95 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.91 3.75 -65.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.657 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds