Wall clock time and date at job start Mon Mar 30 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.37833 * 119.94278 * 104.72336 * 14 13 12 16 16 C 1.39684 * 119.87642 * 179.74803 * 15 14 13 17 17 C 1.47596 * 120.12362 * 180.27385 * 16 15 14 18 18 O 1.21490 * 120.00074 * 0.27453 * 17 16 15 19 19 O 1.34733 * 120.00117 * 180.27629 * 17 16 15 20 20 C 1.39721 * 119.75535 * 0.54830 * 16 15 14 21 21 C 1.37802 * 119.87182 * 359.70349 * 20 16 15 22 22 C 1.38653 * 119.93546 * 284.99864 * 14 13 12 23 23 F 1.35100 * 119.87515 * 359.97438 * 22 14 13 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 29 29 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 30 30 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 31 31 H 1.08004 * 120.06048 * 359.97438 * 15 14 13 32 32 H 0.96697 * 116.99929 * 179.97438 * 19 17 16 33 33 H 1.07995 * 120.06750 * 179.68019 * 20 16 15 34 34 H 1.08001 * 119.93966 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.8809 -0.3295 3.9917 16 6 4.3458 -1.0163 5.1157 17 6 5.7280 -0.8098 5.5907 18 8 6.4620 -0.0376 5.0068 19 8 6.1756 -1.4777 6.6718 20 6 3.4995 -1.9037 5.7853 21 6 2.2100 -2.0923 5.3377 22 6 1.7518 -1.4035 4.2246 23 9 0.4866 -1.5921 3.7901 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.9173 -1.1205 1.0286 29 1 2.7589 1.0462 2.1181 30 1 1.0871 0.6162 2.5525 31 1 4.5325 0.3537 3.4672 32 1 7.0880 -1.3098 6.9448 33 1 3.8554 -2.4412 6.6518 34 1 1.5550 -2.7783 5.8542 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:12 Heat of formation + Delta-G solvation = -114.945890 kcal Electronic energy + Delta-G solvation = -19595.270977 eV Core-core repulsion = 16214.289470 eV Total energy + Delta-G solvation = -3380.981507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.77176 -40.54257 -38.77269 -36.27471 -35.97508 -33.14682 -31.31017 -31.03008 -28.25410 -25.45223 -24.69544 -24.48847 -22.15899 -20.95628 -19.80336 -18.23640 -17.72390 -17.11198 -16.59562 -16.12301 -15.85871 -15.45104 -14.90486 -14.57019 -14.10003 -13.87796 -13.65357 -13.36733 -13.22673 -12.83148 -12.39584 -12.27964 -11.81574 -11.69120 -11.36011 -11.07516 -10.89768 -10.79027 -10.71968 -10.29916 -10.13669 -10.01824 -9.17593 -8.88869 -8.72219 -8.49316 -7.35710 -6.04023 -4.10521 0.45716 1.08690 2.31839 2.78874 3.28604 3.36466 3.40753 3.49729 4.18676 4.39409 4.52219 4.68398 4.85672 5.01226 5.11202 5.27404 5.47282 5.67441 5.71570 5.84130 5.97932 6.05682 6.14376 6.22743 6.32443 6.67940 6.86583 7.13218 7.20486 7.45845 7.67998 7.76400 7.86516 8.24602 8.32522 8.60555 8.98949 9.55542 11.02365 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004411 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.684068 B = 6346.699369 C = 7075.849136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.096 3.904 14 C -0.119 4.119 15 C -0.020 4.020 16 C -0.150 4.150 17 C 0.531 3.469 18 O -0.513 6.513 19 O -0.514 6.514 20 C -0.038 4.038 21 C -0.176 4.176 22 C 0.166 3.834 23 F -0.117 7.117 24 H 0.004 0.996 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -4.092 18.469 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.033 4.033 14 C -0.121 4.121 15 C -0.039 4.039 16 C -0.152 4.152 17 C 0.375 3.625 18 O -0.402 6.402 19 O -0.326 6.326 20 C -0.056 4.056 21 C -0.195 4.195 22 C 0.146 3.854 23 F -0.095 7.095 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.272 0.728 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.562 -4.080 18.170 19.173 hybrid contribution 1.423 0.159 -0.992 1.742 sum 5.985 -3.921 17.178 18.609 Atomic orbital electron populations 1.21708 0.97683 0.99468 0.99358 1.19146 0.92759 0.92387 0.85275 0.97941 1.21276 1.31472 1.12549 0.90355 0.92133 1.24911 0.95009 0.94987 0.99058 1.69902 1.36635 1.22878 1.23410 0.86457 0.78606 0.79615 0.82818 1.19754 1.20956 1.21079 1.60818 1.32169 1.32613 1.05670 1.20853 1.00518 0.93441 0.88474 1.20142 0.93498 0.99391 0.99030 1.21101 0.94085 0.95928 0.92793 1.18949 0.91502 1.04536 1.00172 1.20795 0.87766 0.76707 0.77187 1.90915 1.57666 1.35354 1.56311 1.84548 1.36865 1.65755 1.45448 1.21198 0.91918 0.94408 0.98079 1.21130 0.97440 1.03119 0.97792 1.17884 0.79988 0.94840 0.92688 1.91579 1.36018 1.93179 1.88725 0.97681 0.94881 0.90060 0.92946 0.85048 0.94392 0.90209 0.83677 0.72791 0.83799 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.76 16 2 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.21 8.59 -34.44 -0.30 -14.51 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -14.49 6.29 -109.22 -0.69 -15.18 16 13 C 0.10 1.72 5.29 -4.98 -0.03 1.69 16 14 C -0.12 -1.78 5.39 -104.62 -0.56 -2.35 16 15 C -0.02 -0.27 9.21 -39.19 -0.36 -0.63 16 16 C -0.15 -1.79 5.87 -104.99 -0.62 -2.41 16 17 C 0.53 6.14 8.27 34.55 0.29 6.42 16 18 O -0.51 -7.51 17.13 -19.26 -0.33 -7.83 16 19 O -0.51 -4.05 12.68 -40.58 -0.51 -4.56 16 20 C -0.04 -0.38 9.61 -39.19 -0.38 -0.75 16 21 C -0.18 -1.92 10.01 -39.58 -0.40 -2.32 16 22 C 0.17 2.36 7.25 -39.26 -0.28 2.07 16 23 F -0.12 -1.90 16.74 2.25 0.04 -1.86 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.33 6.96 8.22 -39.29 -0.32 6.64 16 29 H 0.04 0.66 7.86 -51.93 -0.41 0.26 16 30 H 0.08 1.46 7.37 -51.93 -0.38 1.08 16 31 H 0.15 1.98 7.59 -52.48 -0.40 1.58 16 32 H 0.41 1.42 9.11 45.56 0.42 1.83 16 33 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -31.38 302.81 -6.88 -38.26 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.98 Total: 3.85 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.57 Total: -8.76 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.06 Total: -39.96 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.84 Total: -12.40 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.38 -6.88 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.688 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds