Wall clock time and date at job start Mon Mar 30 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.37833 * 119.94278 * 104.72336 * 14 13 12 16 16 C 1.39684 * 119.87642 * 179.74803 * 15 14 13 17 17 C 1.47596 * 120.12362 * 180.27385 * 16 15 14 18 18 O 1.21490 * 120.00074 * 0.27453 * 17 16 15 19 19 O 1.34733 * 120.00117 * 180.27629 * 17 16 15 20 20 C 1.39721 * 119.75535 * 0.54830 * 16 15 14 21 21 C 1.37802 * 119.87182 * 359.70349 * 20 16 15 22 22 C 1.38653 * 119.93546 * 284.99864 * 14 13 12 23 23 F 1.35100 * 119.87515 * 359.97438 * 22 14 13 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 29 29 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 30 30 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 31 31 H 1.08004 * 120.06048 * 359.97438 * 15 14 13 32 32 H 0.96697 * 116.99929 * 179.97438 * 19 17 16 33 33 H 1.07995 * 120.06750 * 179.68019 * 20 16 15 34 34 H 1.08001 * 119.93966 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.8809 -0.3295 3.9917 16 6 4.3458 -1.0163 5.1157 17 6 5.7280 -0.8098 5.5907 18 8 6.4620 -0.0376 5.0068 19 8 6.1756 -1.4777 6.6718 20 6 3.4995 -1.9037 5.7853 21 6 2.2100 -2.0923 5.3377 22 6 1.7518 -1.4035 4.2246 23 9 0.4866 -1.5921 3.7901 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.9173 -1.1205 1.0286 29 1 2.7589 1.0462 2.1181 30 1 1.0871 0.6162 2.5525 31 1 4.5325 0.3537 3.4672 32 1 7.0880 -1.3098 6.9448 33 1 3.8554 -2.4412 6.6518 34 1 1.5550 -2.7783 5.8542 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:12 Heat of formation + Delta-G solvation = -136.380186 kcal Electronic energy + Delta-G solvation = -19596.200438 eV Core-core repulsion = 16214.289470 eV Total energy + Delta-G solvation = -3381.910968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92115 -41.44468 -39.78446 -37.70191 -37.08791 -34.90334 -32.85389 -32.01261 -29.98060 -27.44244 -26.04783 -25.64149 -23.20017 -22.06574 -21.67113 -19.13919 -18.91441 -18.38658 -17.96853 -17.40035 -16.92474 -16.73474 -16.48930 -15.80315 -15.59538 -15.35699 -14.85986 -14.77236 -14.32998 -14.14792 -13.75120 -13.57942 -13.36668 -13.01017 -12.79320 -12.64476 -12.56749 -12.42115 -12.21695 -12.09115 -11.85772 -11.70784 -10.93224 -10.60009 -10.14355 -9.83732 -9.14319 -8.15037 -6.29341 -0.51763 0.11476 1.38527 1.40836 1.42545 1.54409 2.00017 2.40262 2.53517 3.13841 3.18034 3.45201 3.67131 3.75991 4.00811 4.04317 4.20781 4.51112 4.60025 4.77503 4.80805 4.85409 5.02947 5.05979 5.11185 5.16390 5.21389 5.43175 5.56274 5.63991 5.69207 5.82294 6.19194 6.39638 6.69630 6.93997 6.96074 7.40993 8.90992 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004411 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.684068 B = 6346.699369 C = 7075.849136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.679 5.679 13 C 0.101 3.899 14 C -0.135 4.135 15 C -0.027 4.027 16 C -0.154 4.154 17 C 0.540 3.460 18 O -0.551 6.551 19 O -0.497 6.497 20 C -0.015 4.015 21 C -0.161 4.161 22 C 0.146 3.854 23 F -0.135 7.135 24 H 0.020 0.980 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.333 0.667 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.435 0.565 33 H 0.182 0.818 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -5.898 20.318 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.310 5.310 13 C -0.028 4.028 14 C -0.136 4.136 15 C -0.046 4.046 16 C -0.155 4.155 17 C 0.385 3.615 18 O -0.443 6.443 19 O -0.311 6.311 20 C -0.033 4.033 21 C -0.179 4.179 22 C 0.126 3.874 23 F -0.113 7.113 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.298 0.702 33 H 0.200 0.800 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.527 -5.902 20.063 21.631 hybrid contribution 1.185 0.708 -1.412 1.975 sum 6.712 -5.194 18.651 20.491 Atomic orbital electron populations 1.21524 0.97620 0.98831 0.98988 1.18951 0.92806 0.90944 0.86622 1.00910 1.21582 1.31741 1.12719 0.91529 0.92297 1.25728 0.95110 0.95663 1.02040 1.70024 1.37423 1.24027 1.24191 0.85418 0.78117 0.78568 0.78968 1.19141 1.20503 1.20564 1.60703 1.32208 1.32958 1.05085 1.20749 1.00183 0.93294 0.88615 1.19801 0.94486 1.00717 0.98619 1.21002 0.93386 0.96407 0.93765 1.19080 0.92306 1.04486 0.99643 1.20652 0.87246 0.76122 0.77433 1.90914 1.58564 1.37122 1.57727 1.84483 1.38713 1.64425 1.43508 1.21590 0.90859 0.92792 0.98070 1.21456 0.98079 1.02223 0.96155 1.18190 0.79365 0.95766 0.94089 1.91534 1.37144 1.93424 1.89197 0.96099 0.95434 0.92306 0.92770 0.84983 0.94710 0.91133 0.84656 0.70225 0.80041 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 9.19 71.98 0.66 -5.06 16 2 C 0.21 11.23 2.60 44.17 0.11 11.34 16 3 H -0.03 -1.52 7.80 -2.39 -0.02 -1.54 16 4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.14 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.68 -29.66 6.29 -499.47 -3.14 -32.80 16 13 C 0.10 3.71 5.29 85.56 0.45 4.16 16 14 C -0.13 -4.04 5.39 -19.86 -0.11 -4.15 16 15 C -0.03 -0.71 9.21 22.52 0.21 -0.51 16 16 C -0.15 -3.32 5.87 -20.10 -0.12 -3.44 16 17 C 0.54 11.20 8.27 70.29 0.58 11.78 16 18 O -0.55 -15.57 17.13 19.87 0.34 -15.23 16 19 O -0.50 -5.90 12.68 -56.43 -0.72 -6.61 16 20 C -0.02 -0.24 9.61 22.52 0.22 -0.03 16 21 C -0.16 -2.97 10.01 22.27 0.22 -2.75 16 22 C 0.15 3.98 7.25 22.48 0.16 4.14 16 23 F -0.13 -4.32 16.74 44.97 0.75 -3.57 16 24 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 3.29 6.07 -2.38 -0.01 3.27 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.33 14.31 8.22 -89.69 -0.74 13.58 16 29 H 0.03 1.29 7.86 -2.39 -0.02 1.27 16 30 H 0.07 2.69 7.37 -2.39 -0.02 2.67 16 31 H 0.14 3.82 7.59 -2.91 -0.02 3.80 16 32 H 0.44 1.35 9.11 -74.06 -0.67 0.68 16 33 H 0.18 1.62 7.61 -2.91 -0.02 1.60 16 34 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.81 302.81 2.31 -66.50 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.26 Total: 11.96 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.06 Total: -13.09 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.90 Total: -85.95 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.38 Total: -21.84 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.75 Total: -3.57 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.81 2.31 -66.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.882 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds