Wall clock time and date at job start Mon Mar 30 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 2 15 15 C 1.37839 * 119.94059 * 104.72350 * 14 13 12 16 16 C 1.39679 * 119.87731 * 179.77084 * 15 14 13 17 17 C 1.47599 * 120.12521 * 180.23360 * 16 15 14 18 18 O 1.21487 * 120.00081 * 0.27022 * 17 16 15 19 19 O 1.34734 * 119.99971 * 180.27828 * 17 16 15 20 20 C 1.39729 * 119.75566 * 0.50721 * 16 15 14 21 21 C 1.37801 * 119.87066 * 359.74530 * 20 16 15 22 22 C 1.38651 * 119.93822 * 285.00031 * 14 13 12 23 23 F 1.35093 * 119.87740 * 0.02562 * 22 14 13 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 26 26 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 27 27 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 29 29 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 30 30 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 31 31 H 1.08005 * 120.05876 * 0.02562 * 15 14 13 32 32 H 0.96700 * 116.99398 * 180.02562 * 19 17 16 33 33 H 1.07991 * 120.06640 * 179.73004 * 20 16 15 34 34 H 1.07999 * 119.93862 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 6 1.7104 -0.8869 -4.5549 16 6 2.1806 -1.5727 -5.6773 17 6 1.2473 -1.9615 -6.7526 18 8 0.0685 -1.6809 -6.6648 19 8 1.7026 -2.6279 -7.8315 20 6 3.5368 -1.8943 -5.7757 21 6 4.4036 -1.5291 -4.7686 22 6 3.9320 -0.8436 -3.6589 23 9 4.7861 -0.4890 -2.6741 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.7087 1.1613 3.4844 28 1 1.4496 -1.4981 -1.4100 29 1 1.0870 0.6162 -2.5525 30 1 2.7589 1.0461 -2.1182 31 1 0.6624 -0.6394 -4.4718 32 1 1.0537 -2.8607 -8.5096 33 1 3.9050 -2.4282 -6.6391 34 1 5.4519 -1.7775 -4.8433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:15 Heat of formation + Delta-G solvation = -113.816392 kcal Electronic energy + Delta-G solvation = -19589.838337 eV Core-core repulsion = 16208.905809 eV Total energy + Delta-G solvation = -3380.932528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74874 -40.55311 -38.78185 -36.28783 -36.07067 -33.12062 -31.33900 -31.03736 -28.20773 -25.21582 -24.69682 -24.56138 -22.16644 -20.93351 -20.22600 -18.24619 -17.70638 -17.10071 -16.46156 -16.08888 -15.86910 -15.44096 -14.83338 -14.55107 -14.22251 -13.89220 -13.60127 -13.33883 -13.03009 -12.86779 -12.38112 -12.33834 -11.79334 -11.64301 -11.51460 -11.12328 -10.93438 -10.83473 -10.73069 -10.46984 -10.15079 -9.92570 -9.17947 -9.02277 -8.75964 -8.36085 -7.30836 -5.98127 -4.01150 0.45424 1.08265 2.31037 2.77906 3.32768 3.40396 3.45799 3.49526 4.19553 4.44762 4.52231 4.68302 4.85016 5.00522 5.10740 5.33753 5.46023 5.66595 5.71134 5.83213 5.97390 6.04897 6.13495 6.21483 6.31192 6.65763 6.69941 6.82882 7.06593 7.31355 7.66757 7.72724 7.87456 8.24305 8.47925 8.57663 9.06094 9.64083 11.09027 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.004224 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.464953 B = 6626.858903 C = 7190.550089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.677 5.677 13 C 0.096 3.904 14 C -0.120 4.120 15 C -0.021 4.021 16 C -0.151 4.151 17 C 0.531 3.469 18 O -0.514 6.514 19 O -0.514 6.514 20 C -0.037 4.037 21 C -0.176 4.176 22 C 0.168 3.832 23 F -0.115 7.115 24 H 0.028 0.972 25 H 0.090 0.910 26 H 0.005 0.995 27 H 0.259 0.741 28 H 0.327 0.673 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -4.528 -19.060 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.306 5.306 13 C -0.033 4.033 14 C -0.122 4.122 15 C -0.040 4.040 16 C -0.153 4.153 17 C 0.376 3.624 18 O -0.403 6.403 19 O -0.326 6.326 20 C -0.056 4.056 21 C -0.195 4.195 22 C 0.148 3.852 23 F -0.093 7.093 24 H 0.047 0.953 25 H 0.109 0.891 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.272 0.728 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.530 -4.124 -18.360 19.355 hybrid contribution -1.006 -0.415 0.380 1.153 sum 3.523 -4.538 -17.980 18.876 Atomic orbital electron populations 1.22441 1.00554 0.99317 1.00600 1.19212 0.89678 0.94516 0.86209 0.94685 1.21173 1.30106 1.12439 0.89470 0.91848 1.24950 0.95335 0.95218 0.99055 1.69892 1.37370 1.23256 1.23258 0.86442 0.78488 0.79671 0.82809 1.19728 1.21135 1.21224 1.60908 1.58301 1.08755 1.02675 1.20841 0.99220 0.95251 0.87988 1.20144 0.91825 1.02114 0.98074 1.21085 1.00405 0.92420 0.90057 1.18944 0.93286 1.07724 0.95304 1.20798 0.86659 0.74045 0.80915 1.90910 1.18209 1.52608 1.78617 1.84552 1.46556 1.69951 1.31537 1.21200 0.91292 0.95237 0.97836 1.21142 1.01617 1.02689 0.94048 1.17894 0.87395 0.94582 0.85367 1.91592 1.69090 1.88823 1.59808 0.95255 0.89145 0.97555 0.93120 0.85668 0.94479 0.90119 0.83769 0.72797 0.83804 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.94 37.16 0.33 -3.73 16 2 C 0.21 5.28 2.57 -68.87 -0.18 5.10 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 4 C -0.49 -13.69 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.52 5.30 -17.81 -0.09 1.43 16 7 N -0.90 -25.71 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.68 -14.25 6.22 -109.22 -0.68 -14.93 16 13 C 0.10 1.69 5.29 -4.97 -0.03 1.67 16 14 C -0.12 -1.78 5.39 -104.62 -0.56 -2.35 16 15 C -0.02 -0.28 9.21 -39.19 -0.36 -0.64 16 16 C -0.15 -1.78 5.87 -104.98 -0.62 -2.40 16 17 C 0.53 6.05 8.27 34.55 0.29 6.33 16 18 O -0.51 -7.39 17.13 -19.26 -0.33 -7.72 16 19 O -0.51 -3.98 12.68 -40.58 -0.51 -4.50 16 20 C -0.04 -0.37 9.61 -39.18 -0.38 -0.75 16 21 C -0.18 -1.93 10.01 -39.57 -0.40 -2.33 16 22 C 0.17 2.40 7.25 -39.26 -0.28 2.11 16 23 F -0.12 -1.91 16.74 2.25 0.04 -1.87 16 24 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.33 6.60 8.46 -39.29 -0.33 6.27 16 29 H 0.04 0.63 7.24 -51.93 -0.38 0.25 16 30 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 31 H 0.14 1.92 7.59 -52.48 -0.40 1.52 16 32 H 0.41 1.36 9.11 45.56 0.42 1.77 16 33 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -31.48 303.13 -6.90 -38.37 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.00 Total: 4.11 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.58 Total: -9.54 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.02 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.84 Total: -12.22 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.48 -6.90 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.444 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds