Wall clock time and date at job start Mon Mar 30 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 2 15 15 C 1.37839 * 119.94059 * 104.72350 * 14 13 12 16 16 C 1.39679 * 119.87731 * 179.77084 * 15 14 13 17 17 C 1.47599 * 120.12521 * 180.23360 * 16 15 14 18 18 O 1.21487 * 120.00081 * 0.27022 * 17 16 15 19 19 O 1.34734 * 119.99971 * 180.27828 * 17 16 15 20 20 C 1.39729 * 119.75566 * 0.50721 * 16 15 14 21 21 C 1.37801 * 119.87066 * 359.74530 * 20 16 15 22 22 C 1.38651 * 119.93822 * 285.00031 * 14 13 12 23 23 F 1.35093 * 119.87740 * 0.02562 * 22 14 13 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 26 26 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 27 27 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 29 29 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 30 30 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 31 31 H 1.08005 * 120.05876 * 0.02562 * 15 14 13 32 32 H 0.96700 * 116.99398 * 180.02562 * 19 17 16 33 33 H 1.07991 * 120.06640 * 179.73004 * 20 16 15 34 34 H 1.07999 * 119.93862 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 6 1.7104 -0.8869 -4.5549 16 6 2.1806 -1.5727 -5.6773 17 6 1.2473 -1.9615 -6.7526 18 8 0.0685 -1.6809 -6.6648 19 8 1.7026 -2.6279 -7.8315 20 6 3.5368 -1.8943 -5.7757 21 6 4.4036 -1.5291 -4.7686 22 6 3.9320 -0.8436 -3.6589 23 9 4.7861 -0.4890 -2.6741 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.7087 1.1613 3.4844 28 1 1.4496 -1.4981 -1.4100 29 1 1.0870 0.6162 -2.5525 30 1 2.7589 1.0461 -2.1182 31 1 0.6624 -0.6394 -4.4718 32 1 1.0537 -2.8607 -8.5096 33 1 3.9050 -2.4282 -6.6391 34 1 5.4519 -1.7775 -4.8433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:15 Heat of formation + Delta-G solvation = -135.357695 kcal Electronic energy + Delta-G solvation = -19590.772438 eV Core-core repulsion = 16208.905809 eV Total energy + Delta-G solvation = -3381.866629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.91707 -41.43966 -39.78657 -37.77204 -37.08255 -34.87411 -32.88570 -32.00984 -29.87711 -27.26809 -26.02842 -25.63265 -23.20083 -22.19878 -21.90127 -19.12175 -18.83606 -18.31481 -17.95078 -17.37132 -16.90396 -16.70852 -16.49316 -15.88290 -15.56278 -15.15270 -14.88865 -14.76595 -14.21711 -14.12489 -13.73083 -13.69158 -13.37601 -13.05258 -12.86832 -12.73125 -12.55574 -12.37039 -12.17527 -12.13052 -11.85395 -11.71971 -11.06605 -10.49669 -10.14510 -9.83549 -9.03982 -8.10338 -6.21375 -0.51317 0.11899 1.38985 1.41907 1.43626 1.56174 2.00595 2.43545 2.54262 3.18122 3.19294 3.46078 3.67837 3.77722 4.01244 4.04731 4.21820 4.50775 4.58950 4.72194 4.80674 4.84184 4.87807 5.03002 5.05664 5.12769 5.18369 5.38840 5.56705 5.68353 5.69114 5.79172 6.24460 6.58705 6.74587 6.92016 6.96573 7.48315 8.95478 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.004224 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.464953 B = 6626.858903 C = 7190.550089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.680 5.680 13 C 0.101 3.899 14 C -0.135 4.135 15 C -0.025 4.025 16 C -0.154 4.154 17 C 0.540 3.460 18 O -0.550 6.550 19 O -0.498 6.498 20 C -0.015 4.015 21 C -0.162 4.162 22 C 0.144 3.856 23 F -0.136 7.136 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.435 0.565 33 H 0.182 0.818 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -6.187 -20.936 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.310 5.310 13 C -0.028 4.028 14 C -0.136 4.136 15 C -0.044 4.044 16 C -0.155 4.155 17 C 0.386 3.614 18 O -0.442 6.442 19 O -0.312 6.312 20 C -0.033 4.033 21 C -0.180 4.180 22 C 0.124 3.876 23 F -0.114 7.114 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.298 0.702 33 H 0.199 0.801 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.460 -5.800 -20.281 21.789 hybrid contribution -1.273 0.073 0.797 1.504 sum 4.188 -5.727 -19.484 20.735 Atomic orbital electron populations 1.22240 0.99763 0.99355 1.00228 1.18966 0.90177 0.92817 0.87323 0.97818 1.21447 1.30352 1.12434 0.90995 0.92833 1.25716 0.95448 0.95890 1.01881 1.70014 1.38039 1.24280 1.23961 0.85453 0.78068 0.78584 0.79174 1.19384 1.20718 1.20502 1.60734 1.58036 1.09281 1.02902 1.20724 0.99224 0.94736 0.88099 1.19820 0.92641 1.03636 0.97537 1.21003 0.99922 0.92927 0.90530 1.19086 0.94413 1.07146 0.94897 1.20634 0.85786 0.73619 0.81364 1.90910 1.19663 1.54186 1.79485 1.84487 1.47019 1.68682 1.30992 1.21584 0.90008 0.93540 0.98196 1.21450 1.03265 1.00812 0.92496 1.18240 0.86989 0.96087 0.86278 1.91539 1.69579 1.89355 1.60976 0.94866 0.91837 0.95474 0.92978 0.85102 0.94111 0.91651 0.84362 0.70223 0.80091 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.94 71.98 0.64 -6.98 16 2 C 0.22 11.12 2.57 44.17 0.11 11.23 16 3 H 0.00 0.22 7.80 -2.39 -0.02 0.20 16 4 C -0.51 -29.12 8.84 25.60 0.23 -28.89 16 5 H 0.05 3.07 7.81 -2.92 -0.02 3.05 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 N -0.68 -29.38 6.22 -499.46 -3.11 -32.48 16 13 C 0.10 3.68 5.29 85.56 0.45 4.13 16 14 C -0.14 -4.01 5.39 -19.86 -0.11 -4.11 16 15 C -0.02 -0.65 9.21 22.52 0.21 -0.44 16 16 C -0.15 -3.25 5.87 -20.10 -0.12 -3.37 16 17 C 0.54 10.88 8.27 70.29 0.58 11.46 16 18 O -0.55 -15.05 17.13 19.88 0.34 -14.71 16 19 O -0.50 -5.71 12.68 -56.44 -0.72 -6.43 16 20 C -0.02 -0.25 9.61 22.53 0.22 -0.03 16 21 C -0.16 -3.06 10.01 22.27 0.22 -2.83 16 22 C 0.14 4.00 7.25 22.48 0.16 4.16 16 23 F -0.14 -4.56 16.74 44.97 0.75 -3.81 16 24 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 25 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 26 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.33 13.62 8.46 -89.69 -0.76 12.86 16 29 H 0.04 1.43 7.24 -2.39 -0.02 1.41 16 30 H 0.07 2.53 7.99 -2.39 -0.02 2.51 16 31 H 0.14 3.70 7.59 -2.91 -0.02 3.67 16 32 H 0.44 1.17 9.11 -74.06 -0.67 0.50 16 33 H 0.18 1.62 7.61 -2.92 -0.02 1.60 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -69.15 303.13 2.31 -66.84 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.28 Total: 12.20 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.05 Total: -14.73 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.86 Total: -86.04 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.38 Total: -21.14 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.75 Total: -3.81 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.15 2.31 -66.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.521 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds