Wall clock time and date at job start Mon Mar 30 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46966 * 102.99541 * 3 2 1 5 5 C 1.37093 * 119.99356 * 257.34759 * 4 3 2 6 6 H 1.08008 * 119.99850 * 174.78173 * 5 4 3 7 7 C 1.38951 * 120.00505 * 354.77764 * 5 4 3 8 8 N 1.31410 * 119.99693 * 37.70976 * 7 5 4 9 9 Si 1.86798 * 120.00290 * 217.70281 * 7 5 4 10 10 H 1.48504 * 109.46906 * 90.00477 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.00044 * 9 7 5 12 12 H 1.48494 * 109.47287 * 330.00479 * 9 7 5 13 13 C 1.34769 * 120.00423 * 77.34883 * 4 3 2 14 14 O 1.21295 * 120.00390 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99933 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.47043 * 174.92033 * 15 13 4 17 17 C 1.52999 * 115.54927 * 65.64807 * 16 15 13 18 18 S 1.81399 * 109.47201 * 53.11582 * 17 16 15 19 19 C 1.81396 * 103.00293 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.50239 * 211.31760 * 16 15 13 21 21 C 1.52998 * 117.50110 * 279.97830 * 16 15 13 22 22 H 4.40638 * 5.51542 * 180.02562 * 4 1 2 23 23 H 1.08995 * 109.47344 * 342.98878 * 3 2 1 24 24 H 1.09004 * 109.46400 * 222.98808 * 3 2 1 25 25 H 0.97001 * 120.00131 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47137 * 54.92341 * 15 13 4 27 27 H 1.08997 * 109.47111 * 294.92321 * 15 13 4 28 28 H 1.09000 * 109.47543 * 293.11498 * 17 16 15 29 29 H 1.09003 * 109.46903 * 173.11132 * 17 16 15 30 30 H 1.09003 * 109.47048 * 59.99614 * 19 18 17 31 31 H 1.09001 * 109.47683 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47101 * 299.99828 * 19 18 17 33 33 H 1.08992 * 117.49960 * 215.00746 * 20 16 15 34 34 H 1.09006 * 117.49272 * 0.02562 * 20 16 15 35 35 H 1.09005 * 117.49847 * 359.97438 * 21 16 15 36 36 H 1.09007 * 117.49850 * 144.99685 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3115 -1.3459 5 6 3.6082 -0.6913 -2.1515 6 1 3.8892 -0.4768 -3.1721 7 6 3.7274 -1.9837 -1.6552 8 7 2.8194 -2.4576 -0.8319 9 14 5.1781 -3.0474 -2.1583 10 1 6.2964 -2.8435 -1.2027 11 1 4.7721 -4.4758 -2.1474 12 1 5.6194 -2.6687 -3.5247 13 6 3.1172 1.5831 -1.7919 14 8 3.5218 1.8405 -2.9061 15 6 2.5956 2.6854 -0.9064 16 6 2.8028 4.0351 -1.5965 17 6 1.9970 4.2510 -2.8791 18 16 0.2413 3.9343 -2.5507 19 6 -0.5361 4.2360 -4.1616 20 6 3.0519 5.2535 -0.7052 21 6 4.1985 4.6577 -1.5259 22 1 -1.0501 0.0002 0.0001 23 1 3.0098 -0.9818 0.3006 24 1 3.0089 0.7526 0.7008 25 1 2.9028 -3.3596 -0.4851 26 1 3.1338 2.6755 0.0413 27 1 1.5324 2.5309 -0.7221 28 1 2.3515 3.5673 -3.6504 29 1 2.1234 5.2791 -3.2187 30 1 -0.1181 3.5524 -4.9005 31 1 -1.6109 4.0724 -4.0828 32 1 -0.3464 5.2642 -4.4697 33 1 2.6417 6.2087 -1.0324 34 1 3.0686 5.0933 0.3729 35 1 4.9691 4.1060 -0.9874 36 1 4.5427 5.2213 -2.3932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844510368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:47 Heat of formation + Delta-G solvation = 58.984389 kcal Electronic energy + Delta-G solvation = -18509.050590 eV Core-core repulsion = 15701.824442 eV Total energy + Delta-G solvation = -2807.226148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.07522 -37.23327 -34.97828 -32.37349 -31.19846 -29.22697 -28.95304 -27.69627 -26.37754 -24.27921 -22.17157 -19.99288 -18.34640 -17.84228 -16.58924 -16.06776 -15.82010 -14.99866 -14.70326 -14.54276 -14.14584 -13.82791 -13.66131 -13.44402 -12.86468 -12.72149 -12.36184 -12.10894 -11.97476 -11.71358 -11.36727 -11.16255 -11.02370 -10.89431 -10.52664 -10.27730 -10.02978 -9.95347 -9.55381 -9.27463 -9.16362 -8.80200 -8.25014 -7.88425 -7.29768 -6.47275 -3.71922 1.96000 2.90645 3.15224 3.28648 3.33265 3.64098 3.87793 3.98650 4.06345 4.21119 4.82703 4.90134 4.99333 5.18763 5.22575 5.25999 5.30368 5.38037 5.45933 5.69873 5.81919 5.84986 5.90385 6.05794 6.15022 6.18406 6.36773 6.41124 6.46824 6.52438 6.91066 7.08883 7.58165 8.08485 8.46970 8.65748 9.16286 9.41883 10.00033 10.55163 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.006363 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.070106 B = 4399.572002 C = 4744.854801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.137 4.137 3 C 0.192 3.808 4 N -0.441 5.441 5 C -0.318 4.318 6 H 0.110 0.890 7 C 0.038 3.962 8 N -0.846 5.846 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.458 3.542 14 O -0.582 6.582 15 C -0.097 4.097 16 C -0.078 4.078 17 C -0.041 4.041 18 S -0.259 6.259 19 C -0.124 4.124 20 C -0.177 4.177 21 C -0.154 4.154 22 H 0.203 0.797 23 H 0.149 0.851 24 H 0.059 0.941 25 H 0.270 0.730 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 10.842 1.726 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.139 4.139 3 C 0.069 3.931 4 N -0.159 5.159 5 C -0.444 4.444 6 H 0.127 0.873 7 C -0.167 4.167 8 N -0.484 5.484 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.247 3.753 14 O -0.466 6.466 15 C -0.137 4.137 16 C -0.079 4.079 17 C -0.189 4.189 18 S -0.032 6.032 19 C -0.293 4.293 20 C -0.214 4.214 21 C -0.193 4.193 22 H 0.220 0.780 23 H 0.165 0.835 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.907 10.468 2.171 11.079 hybrid contribution 0.756 -0.387 -1.265 1.524 sum -2.152 10.081 0.905 10.348 Atomic orbital electron populations 1.24464 0.95532 1.05119 1.02014 1.23716 0.94807 0.96783 0.98567 1.19278 0.83645 1.04986 0.85179 1.43810 1.53607 1.05718 1.12781 1.19642 1.39418 0.87581 0.97767 0.87269 1.25145 0.97305 0.96948 0.97253 1.70171 1.28760 1.16565 1.32899 0.86294 0.82910 0.78288 0.79603 1.20255 1.21296 1.19311 1.19754 0.84189 0.83306 0.88050 1.90445 1.52236 1.82672 1.21293 1.21160 1.02880 0.91699 0.97987 1.20547 0.98319 0.93311 0.95769 1.22975 0.91791 1.03513 1.00601 1.86784 1.06814 1.92559 1.17074 1.23341 1.03836 1.04017 0.98127 1.23151 1.03376 0.96959 0.97942 1.22944 0.91425 1.02944 1.01991 0.77989 0.83472 0.92328 0.91994 0.90662 0.88790 0.87471 0.91195 0.90601 0.88543 0.91135 0.88931 0.88796 0.88607 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.17 19.25 29.55 0.57 -4.60 16 2 C -0.14 -3.09 12.17 -37.12 -0.45 -3.54 16 3 C 0.19 4.36 4.98 -6.83 -0.03 4.33 16 4 N -0.44 -11.18 2.64 -117.93 -0.31 -11.50 16 5 C -0.32 -8.76 9.36 -14.93 -0.14 -8.90 16 6 H 0.11 3.21 7.39 -52.48 -0.39 2.82 16 7 C 0.04 0.97 4.85 -17.47 -0.08 0.89 16 8 N -0.85 -21.96 10.46 55.50 0.58 -21.38 16 9 Si 0.90 20.16 29.68 -169.99 -5.05 15.12 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.46 10.98 7.39 -10.99 -0.08 10.90 16 14 O -0.58 -15.36 13.89 5.54 0.08 -15.28 16 15 C -0.10 -1.86 3.99 -27.88 -0.11 -1.97 16 16 C -0.08 -1.31 1.20 -154.51 -0.19 -1.49 16 17 C -0.04 -0.69 5.58 37.16 0.21 -0.48 16 18 S -0.26 -4.25 21.02 -107.50 -2.26 -6.51 16 19 C -0.12 -1.58 10.76 101.05 1.09 -0.50 16 20 C -0.18 -2.37 9.90 -26.69 -0.26 -2.63 16 21 C -0.15 -2.29 9.97 -26.69 -0.27 -2.56 16 22 H 0.20 3.33 7.80 -54.09 -0.42 2.90 16 23 H 0.15 3.57 4.92 -51.93 -0.26 3.32 16 24 H 0.06 1.14 6.86 -51.93 -0.36 0.78 16 25 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.07 1.31 7.17 -51.93 -0.37 0.94 16 27 H 0.09 1.88 6.18 -51.93 -0.32 1.56 16 28 H 0.11 2.11 6.45 -51.92 -0.33 1.77 16 29 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 30 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 31 H 0.10 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -29.98 318.58 -6.88 -36.85 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.96 Total: 8.46 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.24 Total: -10.56 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.27 Total: -32.88 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.05 Total: 15.12 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.26 Total: -6.51 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.98 -6.88 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844510368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.839 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds