Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46966 * 102.99541 * 3 2 1 5 5 C 1.37093 * 119.99356 * 257.34759 * 4 3 2 6 6 H 1.08008 * 119.99850 * 174.78173 * 5 4 3 7 7 C 1.38951 * 120.00505 * 354.77764 * 5 4 3 8 8 N 1.31410 * 119.99693 * 37.70976 * 7 5 4 9 9 Si 1.86798 * 120.00290 * 217.70281 * 7 5 4 10 10 H 1.48504 * 109.46906 * 90.00477 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.00044 * 9 7 5 12 12 H 1.48494 * 109.47287 * 330.00479 * 9 7 5 13 13 C 1.34769 * 120.00423 * 77.34883 * 4 3 2 14 14 O 1.21295 * 120.00390 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99933 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.47043 * 174.92033 * 15 13 4 17 17 C 1.52999 * 115.54927 * 65.64807 * 16 15 13 18 18 S 1.81399 * 109.47201 * 53.11582 * 17 16 15 19 19 C 1.81396 * 103.00293 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.50239 * 211.31760 * 16 15 13 21 21 C 1.52998 * 117.50110 * 279.97830 * 16 15 13 22 22 H 4.40638 * 5.51542 * 180.02562 * 4 1 2 23 23 H 1.08995 * 109.47344 * 342.98878 * 3 2 1 24 24 H 1.09004 * 109.46400 * 222.98808 * 3 2 1 25 25 H 0.97001 * 120.00131 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47137 * 54.92341 * 15 13 4 27 27 H 1.08997 * 109.47111 * 294.92321 * 15 13 4 28 28 H 1.09000 * 109.47543 * 293.11498 * 17 16 15 29 29 H 1.09003 * 109.46903 * 173.11132 * 17 16 15 30 30 H 1.09003 * 109.47048 * 59.99614 * 19 18 17 31 31 H 1.09001 * 109.47683 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47101 * 299.99828 * 19 18 17 33 33 H 1.08992 * 117.49960 * 215.00746 * 20 16 15 34 34 H 1.09006 * 117.49272 * 0.02562 * 20 16 15 35 35 H 1.09005 * 117.49847 * 359.97438 * 21 16 15 36 36 H 1.09007 * 117.49850 * 144.99685 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3115 -1.3459 5 6 3.6082 -0.6913 -2.1515 6 1 3.8892 -0.4768 -3.1721 7 6 3.7274 -1.9837 -1.6552 8 7 2.8194 -2.4576 -0.8319 9 14 5.1781 -3.0474 -2.1583 10 1 6.2964 -2.8435 -1.2027 11 1 4.7721 -4.4758 -2.1474 12 1 5.6194 -2.6687 -3.5247 13 6 3.1172 1.5831 -1.7919 14 8 3.5218 1.8405 -2.9061 15 6 2.5956 2.6854 -0.9064 16 6 2.8028 4.0351 -1.5965 17 6 1.9970 4.2510 -2.8791 18 16 0.2413 3.9343 -2.5507 19 6 -0.5361 4.2360 -4.1616 20 6 3.0519 5.2535 -0.7052 21 6 4.1985 4.6577 -1.5259 22 1 -1.0501 0.0002 0.0001 23 1 3.0098 -0.9818 0.3006 24 1 3.0089 0.7526 0.7008 25 1 2.9028 -3.3596 -0.4851 26 1 3.1338 2.6755 0.0413 27 1 1.5324 2.5309 -0.7221 28 1 2.3515 3.5673 -3.6504 29 1 2.1234 5.2791 -3.2187 30 1 -0.1181 3.5524 -4.9005 31 1 -1.6109 4.0724 -4.0828 32 1 -0.3464 5.2642 -4.4697 33 1 2.6417 6.2087 -1.0324 34 1 3.0686 5.0933 0.3729 35 1 4.9691 4.1060 -0.9874 36 1 4.5427 5.2213 -2.3932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844510368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = 43.092146 kcal Electronic energy + Delta-G solvation = -18509.739729 eV Core-core repulsion = 15701.824442 eV Total energy + Delta-G solvation = -2807.915288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74557 -38.67243 -36.85026 -34.25274 -33.01833 -30.65604 -30.10409 -29.02088 -28.15286 -26.17214 -23.27599 -21.61618 -19.89074 -19.59108 -18.38799 -17.78789 -17.22518 -16.42219 -16.40869 -16.10869 -15.82003 -15.34231 -14.96599 -14.54926 -14.33062 -14.24124 -14.01162 -13.75667 -13.54643 -13.27647 -12.88031 -12.70020 -12.43577 -12.35378 -12.25619 -12.09029 -11.29659 -11.21369 -11.19781 -10.95645 -10.71483 -10.55567 -10.03760 -9.82330 -8.57263 -8.45190 -5.77431 0.78143 1.34172 1.44105 1.54613 1.72834 1.90461 2.12575 2.25070 2.32391 2.84761 2.96063 3.36293 3.69289 3.80809 3.88138 3.94259 4.06383 4.28395 4.31035 4.33123 4.45811 4.60903 4.73425 4.80537 4.82912 4.91005 4.96574 5.07771 5.15481 5.18610 5.29613 5.38135 5.54170 6.07952 6.49421 6.99078 7.18780 7.49981 8.10525 8.56315 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.006363 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.070106 B = 4399.572002 C = 4744.854801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C 0.195 3.805 4 N -0.455 5.455 5 C -0.361 4.361 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.857 5.857 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.449 3.551 14 O -0.616 6.616 15 C -0.082 4.082 16 C -0.111 4.111 17 C -0.029 4.029 18 S -0.301 6.301 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.159 4.159 22 H 0.239 0.761 23 H 0.131 0.869 24 H 0.086 0.914 25 H 0.277 0.723 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 11.866 2.747 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.185 4.185 3 C 0.073 3.927 4 N -0.173 5.173 5 C -0.487 4.487 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.494 5.494 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.239 3.761 14 O -0.503 6.503 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.177 4.177 18 S -0.075 6.075 19 C -0.282 4.282 20 C -0.178 4.178 21 C -0.198 4.198 22 H 0.256 0.744 23 H 0.148 0.852 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.460 11.484 3.222 12.420 hybrid contribution 0.836 -0.732 -1.617 1.962 sum -2.625 10.752 1.605 11.183 Atomic orbital electron populations 1.25352 0.96462 1.03087 0.99929 1.23913 0.95400 0.98684 1.00486 1.19194 0.84306 1.04891 0.84348 1.43992 1.53977 1.05839 1.13494 1.19449 1.42644 0.89156 0.97444 0.90628 1.25771 0.98563 0.97408 0.97191 1.70214 1.29148 1.17132 1.32937 0.85364 0.79807 0.76951 0.78790 1.19052 1.20108 1.20424 1.20654 0.83206 0.83902 0.88290 1.90413 1.53549 1.83311 1.23037 1.21026 1.02142 0.91256 0.97775 1.20605 1.00103 0.93522 0.97025 1.22822 0.91559 1.03717 0.99623 1.86817 1.07360 1.93098 1.20268 1.23402 1.04263 1.05205 0.95283 1.23237 1.00470 0.95868 0.98204 1.23012 0.90896 1.02987 1.02876 0.74408 0.85209 0.89575 0.91272 0.88970 0.89435 0.91439 0.88744 0.91535 0.86788 0.88799 0.86799 0.87306 0.89235 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.07 19.25 74.32 1.43 -7.64 16 2 C -0.18 -8.19 12.17 31.13 0.38 -7.81 16 3 C 0.19 8.93 4.98 84.57 0.42 9.35 16 4 N -0.45 -23.76 2.64 -645.40 -1.71 -25.47 16 5 C -0.36 -20.68 9.36 84.04 0.79 -19.90 16 6 H 0.08 4.74 7.39 -2.91 -0.02 4.71 16 7 C 0.01 0.77 4.85 84.93 0.41 1.18 16 8 N -0.86 -44.67 10.46 21.66 0.23 -44.44 16 9 Si 0.97 41.85 29.68 68.60 2.04 43.89 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.45 22.19 7.39 87.66 0.65 22.84 16 14 O -0.62 -34.12 13.89 -3.08 -0.04 -34.16 16 15 C -0.08 -3.13 3.99 29.85 0.12 -3.01 16 16 C -0.11 -3.61 1.20 -52.18 -0.06 -3.68 16 17 C -0.03 -0.97 5.58 71.98 0.40 -0.57 16 18 S -0.30 -9.67 21.02 -56.49 -1.19 -10.86 16 19 C -0.11 -2.72 10.76 113.37 1.22 -1.50 16 20 C -0.14 -3.34 9.90 30.62 0.30 -3.04 16 21 C -0.16 -4.49 9.97 30.62 0.31 -4.19 16 22 H 0.24 7.14 7.80 -4.41 -0.03 7.10 16 23 H 0.13 6.39 4.92 -2.39 -0.01 6.38 16 24 H 0.09 3.33 6.86 -2.38 -0.02 3.31 16 25 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 26 H 0.09 3.12 7.17 -2.39 -0.02 3.10 16 27 H 0.09 3.47 6.18 -2.39 -0.01 3.46 16 28 H 0.07 2.75 6.45 -2.39 -0.02 2.74 16 29 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -67.06 318.58 6.75 -60.30 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.06 Total: 28.71 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 6.36 Total: -17.97 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.48 Total: -69.91 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.04 Total: -34.16 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.04 Total: 43.89 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.19 Total: -10.86 kcal Total: -67.06 6.75 -60.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844510368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.395 kcal (2) G-P(sol) polarization free energy of solvation -67.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds