Wall clock time and date at job start Mon Mar 30 2020 00:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39159 * 119.99943 * 2 1 4 4 C 1.39162 * 119.93364 * 359.97438 * 3 2 1 5 5 C 1.37616 * 120.10475 * 180.02562 * 4 3 2 6 6 C 1.39833 * 119.96506 * 359.97342 * 5 4 3 7 7 C 1.47385 * 120.07019 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99738 * 0.02562 * 7 6 5 9 9 O 1.34764 * 120.00160 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00033 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46725 * 60.00489 * 16 14 12 18 18 H 1.48505 * 109.46988 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47116 * 300.00464 * 16 14 12 20 20 C 1.39871 * 119.86400 * 0.28242 * 6 5 4 21 21 C 1.37771 * 119.89279 * 359.46474 * 20 6 5 22 22 F 1.35101 * 119.97831 * 180.25346 * 21 20 6 23 23 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46963 * 299.99944 * 1 2 3 25 25 H 1.09000 * 109.47668 * 60.00069 * 1 2 3 26 26 H 0.97000 * 120.00538 * 179.97438 * 2 1 3 27 27 H 1.08006 * 119.94614 * 359.97438 * 4 3 2 28 28 H 1.08006 * 120.01925 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47379 * 59.99759 * 10 9 7 30 30 H 1.09001 * 109.46782 * 299.99842 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99482 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99654 * 11 10 9 33 33 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.05010 * 179.69923 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1607 1.2052 0.0000 4 6 1.4635 2.4095 -0.0005 5 6 2.1480 3.6034 -0.0011 6 6 3.5463 3.6067 -0.0005 7 6 4.2818 4.8839 -0.0005 8 8 3.6730 5.9355 -0.0005 9 8 5.6294 4.8856 -0.0005 10 6 6.2871 6.1801 0.0001 11 6 7.8041 5.9813 -0.0006 12 6 8.4867 7.3249 -0.0007 13 1 7.8974 8.2300 0.0002 14 6 9.8635 7.3987 -0.0007 15 7 10.5811 6.2966 -0.0013 16 14 10.7096 9.0641 -0.0015 17 1 10.3097 9.8229 1.2108 18 1 12.1821 8.8712 -0.0021 19 1 10.3096 9.8220 -1.2142 20 6 4.2457 2.3954 -0.0054 21 6 3.5547 1.2035 0.0004 22 9 4.2285 0.0326 0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.9500 -0.8400 0.0004 27 1 0.3835 2.4072 -0.0014 28 1 1.6055 4.5373 -0.0019 29 1 5.9935 6.7364 0.8903 30 1 5.9935 6.7370 -0.8897 31 1 8.0980 5.4241 0.8889 32 1 8.0973 5.4252 -0.8910 33 1 11.5497 6.3485 -0.0009 34 1 5.3257 2.3945 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850151631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:04 Heat of formation + Delta-G solvation = -113.581016 kcal Electronic energy + Delta-G solvation = -19073.815720 eV Core-core repulsion = 15692.893398 eV Total energy + Delta-G solvation = -3380.922322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91619 -40.16634 -38.98092 -36.21539 -35.65207 -33.31253 -30.95881 -30.57326 -29.86816 -26.77831 -25.10884 -23.33440 -22.64467 -21.08058 -20.45964 -18.52203 -17.37579 -17.17205 -16.45278 -16.03156 -15.96874 -15.66522 -15.50662 -14.87394 -14.49973 -14.49837 -14.29380 -13.47871 -13.32687 -13.10269 -12.54262 -12.36966 -12.32369 -12.11494 -11.55580 -11.20937 -11.02340 -10.71988 -10.68670 -10.51583 -10.23032 -9.59730 -9.59236 -9.28610 -9.08509 -8.41415 -7.80966 -6.07640 -4.11957 0.72976 1.06428 2.72328 2.92943 3.21625 3.32256 3.36183 3.40493 3.68642 4.01770 4.41502 4.51648 4.66349 4.82387 4.98973 5.08581 5.18867 5.26412 5.28831 5.37207 5.71127 5.84465 5.89181 6.13602 6.14225 6.24795 6.39153 6.67842 6.80786 7.01465 7.15584 7.59083 7.66004 7.89781 8.22696 8.30626 8.93439 9.52223 11.03884 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.003299 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.117426 B = 8485.799286 C = 9140.166958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.742 5.742 3 C 0.215 3.785 4 C -0.191 4.191 5 C -0.014 4.014 6 C -0.153 4.153 7 C 0.507 3.493 8 O -0.519 6.519 9 O -0.354 6.354 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.044 4.044 21 C 0.005 3.995 22 F -0.140 7.140 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.407 0.593 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.339 -13.818 -0.003 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.370 5.370 3 C 0.109 3.891 4 C -0.214 4.214 5 C -0.033 4.033 6 C -0.157 4.157 7 C 0.352 3.648 8 O -0.410 6.410 9 O -0.270 6.270 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.063 4.063 21 C -0.019 4.019 22 F -0.119 7.119 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.241 0.759 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.482 -13.594 -0.005 24.583 hybrid contribution 0.831 0.425 0.000 0.933 sum -19.652 -13.169 -0.005 23.656 Atomic orbital electron populations 1.21642 0.79302 1.02896 1.01653 1.44343 1.06318 1.05378 1.80939 1.18034 0.89431 0.87844 0.93828 1.20422 1.00077 0.89603 1.11249 1.21075 0.92162 0.98527 0.91512 1.18824 0.93089 0.90717 1.13038 1.20858 0.82131 0.88779 0.73041 1.90793 1.69773 1.33558 1.46916 1.86573 1.18984 1.38648 1.82791 1.23654 0.95458 0.79485 1.01024 1.19169 0.85057 0.98153 0.98891 1.20948 0.91470 0.91822 1.52237 0.92287 1.24980 0.97362 0.96912 0.94888 1.69961 1.06086 1.27090 1.49747 0.86532 0.78233 0.83744 0.78779 1.20065 1.21147 1.20069 1.21351 1.01844 0.89588 0.93547 1.16933 0.87793 0.82039 1.15123 1.91462 1.80003 1.45434 1.95030 0.90463 0.92370 0.92361 0.75861 0.84388 0.83890 0.92226 0.92231 0.95328 0.95327 0.92663 0.82749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 9.93 59.84 0.59 1.00 16 2 N -0.74 -5.57 5.87 -65.34 -0.38 -5.95 16 3 C 0.22 2.20 6.66 -83.76 -0.56 1.65 16 4 C -0.19 -1.84 9.28 -39.47 -0.37 -2.21 16 5 C -0.01 -0.16 9.58 -39.21 -0.38 -0.54 16 6 C -0.15 -2.25 5.88 -104.97 -0.62 -2.87 16 7 C 0.51 9.39 7.89 34.45 0.27 9.66 16 8 O -0.52 -10.59 16.13 -19.28 -0.31 -10.90 16 9 O -0.35 -7.29 9.46 -40.67 -0.38 -7.68 16 10 C 0.08 1.73 5.41 37.16 0.20 1.93 16 11 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.04 -0.60 9.58 -39.14 -0.37 -0.98 16 21 C 0.00 0.06 7.30 -39.32 -0.29 -0.23 16 22 F -0.14 -1.74 16.62 2.25 0.04 -1.70 16 23 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.24 7.94 -51.92 -0.41 -0.17 16 25 H 0.06 0.24 7.93 -51.93 -0.41 -0.17 16 26 H 0.41 2.73 8.29 -40.82 -0.34 2.40 16 27 H 0.14 0.95 6.70 -52.48 -0.35 0.60 16 28 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.15 2.17 7.60 -52.49 -0.40 1.78 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -32.17 306.48 -6.75 -38.92 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -3.97 Total: -2.26 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.07 Total: -5.72 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.35 Total: -31.83 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.70 Total: -18.58 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.17 -6.75 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850151631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.663 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds