Wall clock time and date at job start Mon Mar 30 2020 00:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39159 * 119.99943 * 2 1 4 4 C 1.39162 * 119.93364 * 359.97438 * 3 2 1 5 5 C 1.37616 * 120.10475 * 180.02562 * 4 3 2 6 6 C 1.39833 * 119.96506 * 359.97342 * 5 4 3 7 7 C 1.47385 * 120.07019 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99738 * 0.02562 * 7 6 5 9 9 O 1.34764 * 120.00160 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00033 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46725 * 60.00489 * 16 14 12 18 18 H 1.48505 * 109.46988 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47116 * 300.00464 * 16 14 12 20 20 C 1.39871 * 119.86400 * 0.28242 * 6 5 4 21 21 C 1.37771 * 119.89279 * 359.46474 * 20 6 5 22 22 F 1.35101 * 119.97831 * 180.25346 * 21 20 6 23 23 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46963 * 299.99944 * 1 2 3 25 25 H 1.09000 * 109.47668 * 60.00069 * 1 2 3 26 26 H 0.97000 * 120.00538 * 179.97438 * 2 1 3 27 27 H 1.08006 * 119.94614 * 359.97438 * 4 3 2 28 28 H 1.08006 * 120.01925 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47379 * 59.99759 * 10 9 7 30 30 H 1.09001 * 109.46782 * 299.99842 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99482 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99654 * 11 10 9 33 33 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.05010 * 179.69923 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1607 1.2052 0.0000 4 6 1.4635 2.4095 -0.0005 5 6 2.1480 3.6034 -0.0011 6 6 3.5463 3.6067 -0.0005 7 6 4.2818 4.8839 -0.0005 8 8 3.6730 5.9355 -0.0005 9 8 5.6294 4.8856 -0.0005 10 6 6.2871 6.1801 0.0001 11 6 7.8041 5.9813 -0.0006 12 6 8.4867 7.3249 -0.0007 13 1 7.8974 8.2300 0.0002 14 6 9.8635 7.3987 -0.0007 15 7 10.5811 6.2966 -0.0013 16 14 10.7096 9.0641 -0.0015 17 1 10.3097 9.8229 1.2108 18 1 12.1821 8.8712 -0.0021 19 1 10.3096 9.8220 -1.2142 20 6 4.2457 2.3954 -0.0054 21 6 3.5547 1.2035 0.0004 22 9 4.2285 0.0326 0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.9500 -0.8400 0.0004 27 1 0.3835 2.4072 -0.0014 28 1 1.6055 4.5373 -0.0019 29 1 5.9935 6.7364 0.8903 30 1 5.9935 6.7370 -0.8897 31 1 8.0980 5.4241 0.8889 32 1 8.0973 5.4252 -0.8910 33 1 11.5497 6.3485 -0.0009 34 1 5.3257 2.3945 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850151631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:04 Heat of formation + Delta-G solvation = -133.205572 kcal Electronic energy + Delta-G solvation = -19074.666705 eV Core-core repulsion = 15692.893398 eV Total energy + Delta-G solvation = -3381.773306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87925 -41.52330 -40.04915 -37.67940 -36.60704 -35.43959 -32.48181 -31.72208 -31.07812 -27.64110 -26.88706 -24.57010 -23.54119 -22.91495 -21.83258 -19.59654 -18.72330 -18.31597 -18.05381 -17.49688 -17.28609 -16.88183 -16.72440 -16.46461 -15.59150 -15.14085 -15.10978 -14.99236 -14.66187 -14.43380 -14.23929 -13.46156 -13.34646 -13.05102 -12.99176 -12.86005 -12.58391 -12.56931 -12.46368 -11.89128 -11.52441 -11.47438 -11.36371 -11.32500 -10.60667 -10.02161 -8.60121 -8.26609 -6.40208 -0.32436 0.13961 1.41054 1.45357 1.47094 1.52990 1.75966 2.28764 2.40970 2.62248 3.07623 3.09370 3.55735 3.75893 4.06590 4.14758 4.23506 4.27364 4.33849 4.54172 4.67239 4.69497 4.73565 4.93594 4.95684 5.01862 5.19550 5.32961 5.46389 5.50773 5.54235 5.74147 6.06492 6.06873 6.50702 6.71241 6.75786 7.29518 8.86012 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.003299 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.117426 B = 8485.799286 C = 9140.166958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.731 5.731 3 C 0.231 3.769 4 C -0.179 4.179 5 C -0.005 4.005 6 C -0.182 4.182 7 C 0.505 3.495 8 O -0.543 6.543 9 O -0.364 6.364 10 C 0.091 3.909 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.066 0.934 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.050 4.050 21 C -0.010 4.010 22 F -0.144 7.144 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.411 0.589 27 H 0.176 0.824 28 H 0.151 0.849 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 -14.204 -0.002 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.357 5.357 3 C 0.121 3.879 4 C -0.201 4.201 5 C -0.024 4.024 6 C -0.186 4.186 7 C 0.353 3.647 8 O -0.436 6.436 9 O -0.281 6.281 10 C 0.018 3.982 11 C -0.006 4.006 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.070 4.070 21 C -0.034 4.034 22 F -0.123 7.123 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.247 0.753 27 H 0.193 0.807 28 H 0.169 0.831 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.860 -14.030 -0.004 26.822 hybrid contribution 1.394 0.316 0.000 1.429 sum -21.466 -13.714 -0.004 25.473 Atomic orbital electron populations 1.21964 0.76944 1.04929 1.02562 1.44649 1.07857 1.04587 1.78585 1.18153 0.88665 0.89279 0.91761 1.20720 1.01629 0.88147 1.09654 1.21217 0.90766 0.99944 0.90477 1.18640 0.94025 0.88786 1.17140 1.21530 0.81006 0.90166 0.72002 1.90761 1.69686 1.34680 1.48462 1.86563 1.20815 1.37224 1.83467 1.23185 0.93355 0.80524 1.01121 1.18979 0.87798 0.97219 0.96623 1.21355 0.92321 0.92610 1.52598 0.91557 1.25992 0.98077 1.01270 0.94028 1.70093 1.06581 1.29677 1.50356 0.85354 0.77009 0.78440 0.79368 1.18969 1.20471 1.18981 1.21212 1.01278 0.90279 0.94259 1.16959 0.88788 0.81337 1.16320 1.91448 1.80319 1.45375 1.95162 0.88144 0.91354 0.91342 0.75339 0.80662 0.83115 0.92048 0.92057 0.97592 0.97591 0.92318 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 9.93 127.77 1.27 1.62 16 2 N -0.73 -8.43 5.87 -360.63 -2.12 -10.55 16 3 C 0.23 4.14 6.66 38.48 0.26 4.40 16 4 C -0.18 -2.88 9.28 22.34 0.21 -2.67 16 5 C 0.00 -0.11 9.58 22.51 0.22 0.11 16 6 C -0.18 -5.42 5.88 -20.09 -0.12 -5.54 16 7 C 0.51 19.34 7.89 70.23 0.55 19.90 16 8 O -0.54 -22.57 16.13 19.79 0.32 -22.25 16 9 O -0.36 -15.78 9.46 -56.75 -0.54 -16.32 16 10 C 0.09 4.31 5.41 71.98 0.39 4.70 16 11 C 0.03 1.72 5.35 29.85 0.16 1.88 16 12 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 13 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 14 C 0.01 0.30 5.46 84.66 0.46 0.77 16 15 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 16 Si 0.98 44.29 29.54 68.60 2.03 46.31 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.05 -1.43 9.58 22.55 0.22 -1.21 16 21 C -0.01 -0.25 7.30 22.44 0.16 -0.08 16 22 F -0.14 -3.51 16.62 44.97 0.75 -2.76 16 23 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.07 0.24 7.94 -2.38 -0.02 0.23 16 25 H 0.07 0.24 7.93 -2.39 -0.02 0.23 16 26 H 0.41 4.29 8.29 -92.71 -0.77 3.52 16 27 H 0.18 1.52 6.70 -2.91 -0.02 1.50 16 28 H 0.15 3.11 7.64 -2.91 -0.02 3.09 16 29 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.14 4.24 7.60 -2.91 -0.02 4.21 16 Total: -1.00 -70.98 306.48 5.09 -65.88 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.36 Total: 3.94 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.01 Total: -7.87 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -1.83 Total: -66.93 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.22 Total: -38.57 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.75 Total: -2.76 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.98 5.09 -65.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850151631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.323 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds