Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 C 1.50700 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.38365 * 119.86364 * 0.25191 * 4 3 2 6 6 C 1.37918 * 120.18517 * 180.25493 * 5 4 3 7 7 C 1.39675 * 119.89545 * 359.75125 * 6 5 4 8 8 C 1.47731 * 120.13542 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99648 * 137.26492 * 8 7 6 10 10 N 1.34773 * 120.00132 * 317.25712 * 8 7 6 11 11 C 1.46502 * 120.00043 * 3.37117 * 10 8 7 12 12 C 1.36870 * 120.00330 * 183.35663 * 10 8 7 13 13 H 1.08004 * 119.99418 * 18.87141 * 12 10 8 14 14 C 1.39040 * 120.00536 * 198.87084 * 12 10 8 15 15 N 1.31367 * 119.99906 * 18.71161 * 14 12 10 16 16 Si 1.86800 * 120.00237 * 198.71218 * 14 12 10 17 17 H 1.48505 * 109.47174 * 59.99565 * 16 14 12 18 18 H 1.48501 * 109.47209 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46995 * 299.99968 * 16 14 12 20 20 C 1.39600 * 119.72039 * 359.97438 * 7 6 5 21 21 C 1.38188 * 119.81999 * 359.97438 * 20 7 6 22 22 F 1.35102 * 119.94816 * 179.97438 * 21 20 7 23 23 H 1.08994 * 109.47276 * 299.99861 * 1 2 3 24 24 H 1.09002 * 109.47129 * 60.00149 * 1 2 3 25 25 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47188 * 59.99985 * 3 2 1 27 27 H 1.09004 * 109.47213 * 299.99833 * 3 2 1 28 28 H 1.08003 * 119.90665 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.05371 * 179.72269 * 6 5 4 30 30 H 1.08999 * 109.47351 * 92.32959 * 11 10 8 31 31 H 1.09002 * 109.47147 * 212.33465 * 11 10 8 32 32 H 1.08997 * 109.46579 * 332.32986 * 11 10 8 33 33 H 0.97001 * 119.99575 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.08344 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1046 -0.0641 -0.0064 6 6 5.4788 -0.1807 -0.0017 7 6 6.2749 0.9670 0.0036 8 6 7.7474 0.8482 0.0081 9 8 8.4178 1.5720 -0.7026 10 7 8.3476 -0.0623 0.8000 11 6 7.5379 -0.9839 1.6008 12 6 9.7137 -0.1261 0.8560 13 1 10.3074 0.7138 0.5266 14 6 10.3371 -1.2722 1.3367 15 7 9.6761 -2.4062 1.3901 16 14 12.1146 -1.1995 1.9065 17 1 12.2369 -0.2290 3.0239 18 1 12.5414 -2.5445 2.3693 19 1 12.9787 -0.7673 0.7788 20 6 5.6731 2.2266 0.0036 21 6 4.2951 2.3299 -0.0022 22 9 3.7101 3.5477 -0.0017 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.4888 -0.9514 -0.0108 29 1 5.9387 -1.1579 -0.0017 30 1 7.3724 -1.9036 1.0397 31 1 8.0605 -1.2138 2.5293 32 1 6.5785 -0.5199 1.8292 33 1 10.1109 -3.2056 1.7259 34 1 6.2831 3.1179 0.0073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865067961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = -84.260740 kcal Electronic energy + Delta-G solvation = -19917.466167 eV Core-core repulsion = 16537.815268 eV Total energy + Delta-G solvation = -3379.650899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.74694 -39.56691 -38.28579 -37.07760 -34.79041 -32.25214 -31.45451 -30.26566 -27.64655 -26.45284 -25.81459 -24.44619 -22.39051 -21.86974 -19.60716 -17.35455 -16.90148 -16.76497 -16.24973 -16.18925 -15.49494 -15.41900 -15.26134 -14.67373 -14.27248 -14.05310 -13.91109 -13.31170 -13.04008 -12.82281 -12.53262 -12.11494 -11.82449 -11.67859 -11.44940 -11.32079 -11.06968 -10.98324 -10.73016 -10.45185 -10.34898 -9.99839 -9.10964 -8.70517 -8.53734 -8.24228 -7.82330 -6.46435 -3.92572 1.18519 1.49309 3.13228 3.20319 3.24217 3.49177 3.53642 4.01952 4.16008 4.41734 4.67474 4.85771 5.03000 5.06275 5.08764 5.15099 5.23394 5.30997 5.42954 5.46430 5.59480 5.67103 6.05799 6.24650 6.31808 6.36488 6.46722 6.74395 6.76664 6.97766 7.07435 7.13063 7.46426 8.00197 8.37435 9.07285 9.29392 9.87687 10.57272 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.004553 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.961056 B = 6148.484713 C = 6825.088733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.110 3.890 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.108 4.108 7 C -0.060 4.060 8 C 0.467 3.533 9 O -0.587 6.587 10 N -0.425 5.425 11 C 0.101 3.899 12 C -0.309 4.309 13 H 0.104 0.896 14 C 0.034 3.966 15 N -0.869 5.869 16 Si 0.928 3.072 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.115 4.115 21 C 0.092 3.908 22 F -0.143 7.143 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.271 0.729 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 2.079 0.974 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.034 3.966 4 C -0.131 4.131 5 C -0.094 4.094 6 C -0.127 4.127 7 C -0.063 4.063 8 C 0.256 3.744 9 O -0.473 6.473 10 N -0.141 5.141 11 C -0.043 4.043 12 C -0.437 4.437 13 H 0.122 0.878 14 C -0.171 4.171 15 N -0.506 5.506 16 Si 0.754 3.246 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.196 1.196 20 C -0.135 4.135 21 C 0.073 3.927 22 F -0.122 7.122 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.196 2.066 0.721 15.353 hybrid contribution 0.465 0.259 0.336 0.630 sum -14.731 2.325 1.058 14.950 Atomic orbital electron populations 1.22748 0.80768 1.02913 1.00026 1.87856 1.19751 1.27232 1.95480 1.21062 0.89718 0.84943 1.00879 1.19625 0.94200 0.93027 1.06256 1.20768 0.94172 0.96627 0.97845 1.21751 0.93208 0.99218 0.98514 1.20192 0.95482 0.92585 0.98083 1.17806 0.85671 0.86513 0.84395 1.90627 1.64801 1.47775 1.44068 1.43530 1.06540 1.28774 1.35207 1.21838 0.92683 0.92859 0.96870 1.19696 0.80592 1.01460 1.41937 0.87844 1.25359 1.00473 0.94028 0.97236 1.70010 1.38450 0.99217 1.42958 0.85971 0.81756 0.77394 0.79496 1.19731 1.20809 1.19580 1.21081 0.91954 0.98914 1.01512 1.17180 0.90810 0.79179 1.05535 1.91454 1.84531 1.41972 1.94220 0.93989 0.94014 0.89406 0.91854 0.91878 0.84066 0.84066 0.91871 0.91371 0.94245 0.91840 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.50 9.17 -35.23 -0.32 -4.82 16 3 C 0.11 1.31 5.90 36.01 0.21 1.52 16 4 C -0.13 -1.91 5.89 -104.45 -0.62 -2.53 16 5 C -0.08 -1.15 9.36 -39.65 -0.37 -1.52 16 6 C -0.11 -1.89 7.52 -39.16 -0.29 -2.19 16 7 C -0.06 -1.22 5.09 -104.97 -0.53 -1.75 16 8 C 0.47 11.80 7.26 -12.38 -0.09 11.71 16 9 O -0.59 -16.84 16.63 5.28 0.09 -16.75 16 10 N -0.42 -10.91 3.01 -123.32 -0.37 -11.29 16 11 C 0.10 2.22 7.22 59.85 0.43 2.65 16 12 C -0.31 -8.55 9.30 -15.01 -0.14 -8.68 16 13 H 0.10 2.99 7.41 -52.48 -0.39 2.60 16 14 C 0.03 0.88 4.96 -17.45 -0.09 0.79 16 15 N -0.87 -22.46 10.82 55.50 0.60 -21.86 16 16 Si 0.93 20.20 29.59 -169.99 -5.03 15.17 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.11 -2.12 9.65 -39.09 -0.38 -2.49 16 21 C 0.09 1.48 7.24 -39.48 -0.29 1.20 16 22 F -0.14 -2.17 16.79 2.25 0.04 -2.13 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.14 1.90 6.99 -52.48 -0.37 1.53 16 29 H 0.14 2.46 5.91 -52.49 -0.31 2.15 16 30 H 0.06 1.40 6.77 -51.93 -0.35 1.05 16 31 H 0.07 1.56 7.02 -51.93 -0.36 1.20 16 32 H 0.04 0.75 5.54 -51.93 -0.29 0.46 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -30.59 294.45 -5.34 -35.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.74 Total: 1.23 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.04 Total: 0.07 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.23 Total: -33.14 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.24 Total: -21.57 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.59 -5.34 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.333 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds