Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 C 1.50700 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.38365 * 119.86364 * 0.25191 * 4 3 2 6 6 C 1.37918 * 120.18517 * 180.25493 * 5 4 3 7 7 C 1.39675 * 119.89545 * 359.75125 * 6 5 4 8 8 C 1.47731 * 120.13542 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99648 * 137.26492 * 8 7 6 10 10 N 1.34773 * 120.00132 * 317.25712 * 8 7 6 11 11 C 1.46502 * 120.00043 * 3.37117 * 10 8 7 12 12 C 1.36870 * 120.00330 * 183.35663 * 10 8 7 13 13 H 1.08004 * 119.99418 * 18.87141 * 12 10 8 14 14 C 1.39040 * 120.00536 * 198.87084 * 12 10 8 15 15 N 1.31367 * 119.99906 * 18.71161 * 14 12 10 16 16 Si 1.86800 * 120.00237 * 198.71218 * 14 12 10 17 17 H 1.48505 * 109.47174 * 59.99565 * 16 14 12 18 18 H 1.48501 * 109.47209 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46995 * 299.99968 * 16 14 12 20 20 C 1.39600 * 119.72039 * 359.97438 * 7 6 5 21 21 C 1.38188 * 119.81999 * 359.97438 * 20 7 6 22 22 F 1.35102 * 119.94816 * 179.97438 * 21 20 7 23 23 H 1.08994 * 109.47276 * 299.99861 * 1 2 3 24 24 H 1.09002 * 109.47129 * 60.00149 * 1 2 3 25 25 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47188 * 59.99985 * 3 2 1 27 27 H 1.09004 * 109.47213 * 299.99833 * 3 2 1 28 28 H 1.08003 * 119.90665 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.05371 * 179.72269 * 6 5 4 30 30 H 1.08999 * 109.47351 * 92.32959 * 11 10 8 31 31 H 1.09002 * 109.47147 * 212.33465 * 11 10 8 32 32 H 1.08997 * 109.46579 * 332.32986 * 11 10 8 33 33 H 0.97001 * 119.99575 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.08344 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1046 -0.0641 -0.0064 6 6 5.4788 -0.1807 -0.0017 7 6 6.2749 0.9670 0.0036 8 6 7.7474 0.8482 0.0081 9 8 8.4178 1.5720 -0.7026 10 7 8.3476 -0.0623 0.8000 11 6 7.5379 -0.9839 1.6008 12 6 9.7137 -0.1261 0.8560 13 1 10.3074 0.7138 0.5266 14 6 10.3371 -1.2722 1.3367 15 7 9.6761 -2.4062 1.3901 16 14 12.1146 -1.1995 1.9065 17 1 12.2369 -0.2290 3.0239 18 1 12.5414 -2.5445 2.3693 19 1 12.9787 -0.7673 0.7788 20 6 5.6731 2.2266 0.0036 21 6 4.2951 2.3299 -0.0022 22 9 3.7101 3.5477 -0.0017 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.4888 -0.9514 -0.0108 29 1 5.9387 -1.1579 -0.0017 30 1 7.3724 -1.9036 1.0397 31 1 8.0605 -1.2138 2.5293 32 1 6.5785 -0.5199 1.8292 33 1 10.1109 -3.2056 1.7259 34 1 6.2831 3.1179 0.0073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865067961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = -103.356685 kcal Electronic energy + Delta-G solvation = -19918.294230 eV Core-core repulsion = 16537.815268 eV Total energy + Delta-G solvation = -3380.478961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.00828 -41.15895 -39.58769 -38.30120 -36.79870 -33.98601 -32.98082 -31.66928 -28.85700 -28.06922 -27.01228 -26.06932 -23.72163 -23.27796 -21.26975 -19.14735 -18.65949 -17.88984 -17.48894 -17.22338 -17.08350 -16.56543 -16.38668 -16.33439 -15.99192 -15.72767 -15.28135 -14.83246 -14.22298 -14.10241 -13.90813 -13.71277 -13.40765 -13.23818 -12.96166 -12.74990 -12.50733 -12.38852 -12.30396 -12.13879 -12.04861 -11.06933 -10.80992 -10.55416 -9.99580 -9.80827 -9.62241 -8.44386 -6.01838 -0.20633 0.13554 1.38116 1.41523 1.52079 1.89033 2.23046 2.54079 2.64219 2.84618 3.06337 3.24490 3.62853 3.82152 3.88142 4.12068 4.18004 4.38450 4.39240 4.52931 4.59659 4.64546 4.72509 4.91431 4.93958 4.97477 5.03548 5.17706 5.27775 5.34668 5.39725 5.76797 5.99006 6.18717 6.38406 7.05876 7.32399 7.90376 8.58255 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.004553 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.961056 B = 6148.484713 C = 6825.088733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.111 3.889 4 C -0.111 4.111 5 C -0.064 4.064 6 C -0.103 4.103 7 C -0.087 4.087 8 C 0.458 3.542 9 O -0.636 6.636 10 N -0.438 5.438 11 C 0.113 3.887 12 C -0.356 4.356 13 H 0.075 0.925 14 C 0.007 3.993 15 N -0.881 5.881 16 Si 0.992 3.008 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.098 3.902 22 F -0.135 7.135 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.167 0.833 29 H 0.140 0.860 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.280 0.720 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.069 1.300 1.669 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.034 3.966 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.090 4.090 8 C 0.249 3.751 9 O -0.526 6.526 10 N -0.153 5.153 11 C -0.029 4.029 12 C -0.484 4.484 13 H 0.093 0.907 14 C -0.198 4.198 15 N -0.517 5.517 16 Si 0.814 3.186 17 H -0.192 1.192 18 H -0.190 1.190 19 H -0.201 1.201 20 C -0.143 4.143 21 C 0.078 3.922 22 F -0.113 7.113 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.184 0.816 29 H 0.158 0.842 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.618 1.261 1.435 17.721 hybrid contribution 1.027 0.508 0.080 1.149 sum -16.590 1.769 1.515 16.753 Atomic orbital electron populations 1.22973 0.78725 1.04202 1.01145 1.87809 1.21907 1.26889 1.95706 1.21122 0.87284 0.85699 1.02453 1.20011 0.96231 0.92073 1.02947 1.20970 0.92962 0.97818 0.96431 1.21723 0.94157 0.98043 0.98280 1.19785 0.92639 0.94466 1.02123 1.18584 0.87783 0.85461 0.83280 1.90562 1.66722 1.49392 1.45928 1.43754 1.06415 1.29484 1.35640 1.21797 0.93234 0.92327 0.95553 1.19661 0.81862 1.01815 1.45026 0.90661 1.26114 1.04360 0.93157 0.96134 1.70051 1.39947 0.99516 1.42222 0.85031 0.76614 0.78133 0.78786 1.19172 1.18952 1.20055 1.21014 0.93263 0.97902 1.02077 1.17045 0.89835 0.80045 1.05244 1.91477 1.84128 1.41608 1.94106 0.92825 0.92925 0.88156 0.90087 0.90276 0.81559 0.84202 0.92179 0.92648 0.91325 0.91055 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -7.79 9.17 -148.98 -1.37 -9.15 16 3 C 0.11 2.16 5.90 71.24 0.42 2.58 16 4 C -0.11 -2.94 5.89 -19.76 -0.12 -3.05 16 5 C -0.06 -1.76 9.36 22.22 0.21 -1.55 16 6 C -0.10 -3.51 7.52 22.54 0.17 -3.34 16 7 C -0.09 -3.59 5.09 -20.09 -0.10 -3.69 16 8 C 0.46 24.26 7.26 86.75 0.63 24.89 16 9 O -0.64 -38.83 16.63 -4.01 -0.07 -38.89 16 10 N -0.44 -23.39 3.01 -662.33 -2.00 -25.39 16 11 C 0.11 5.05 7.22 127.77 0.92 5.97 16 12 C -0.36 -20.57 9.30 84.10 0.78 -19.78 16 13 H 0.08 4.65 7.41 -2.91 -0.02 4.63 16 14 C 0.01 0.34 4.96 84.95 0.42 0.76 16 15 N -0.88 -45.57 10.82 21.68 0.23 -45.33 16 16 Si 0.99 41.69 29.59 68.60 2.03 43.72 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.12 -4.55 9.65 22.59 0.22 -4.33 16 21 C 0.10 2.97 7.24 22.34 0.16 3.13 16 22 F -0.13 -3.78 16.79 44.97 0.75 -3.02 16 23 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.17 3.81 6.99 -2.91 -0.02 3.79 16 29 H 0.14 4.78 5.91 -2.91 -0.02 4.76 16 30 H 0.06 2.68 6.77 -2.39 -0.02 2.66 16 31 H 0.05 2.56 7.02 -2.39 -0.02 2.55 16 32 H 0.07 2.60 5.54 -2.39 -0.01 2.58 16 33 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -68.35 294.45 5.68 -62.67 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.12 Total: 12.27 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 4.96 Total: 3.13 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.76 Total: -70.72 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.43 Total: -48.05 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.75 Total: -3.02 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -68.35 5.68 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.683 kcal (2) G-P(sol) polarization free energy of solvation -68.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds