Wall clock time and date at job start Mon Mar 30 2020 01:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00334 * 2 1 4 4 C 1.50706 * 109.47607 * 179.97438 * 3 2 1 5 5 C 1.38342 * 119.86442 * 0.25129 * 4 3 2 6 6 C 1.37940 * 120.17522 * 180.29822 * 5 4 3 7 7 C 1.39599 * 119.90240 * 359.72692 * 6 5 4 8 8 C 1.47854 * 120.13145 * 180.02562 * 7 6 5 9 9 O 1.21550 * 119.99556 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00001 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.46932 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00009 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99544 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99625 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00234 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.46851 * 89.99687 * 16 14 12 18 18 H 1.48493 * 109.46932 * 209.99857 * 16 14 12 19 19 H 1.48492 * 109.47183 * 330.00067 * 16 14 12 20 20 C 1.39529 * 119.73393 * 359.97438 * 7 6 5 21 21 C 1.38204 * 119.82840 * 0.02562 * 20 7 6 22 22 F 1.35104 * 119.95575 * 180.02562 * 21 20 7 23 23 H 1.08999 * 109.47207 * 300.00356 * 1 2 3 24 24 H 1.09001 * 109.46884 * 60.00082 * 1 2 3 25 25 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47141 * 59.99703 * 3 2 1 27 27 H 1.08998 * 109.47103 * 300.00008 * 3 2 1 28 28 H 1.08003 * 119.91247 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.05227 * 179.70037 * 6 5 4 30 30 H 0.97001 * 119.99540 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.46948 * 299.99766 * 11 10 8 32 32 H 1.09004 * 109.47459 * 59.99729 * 11 10 8 33 33 H 0.96998 * 119.99912 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.08323 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1046 -0.0639 -0.0042 6 6 5.4791 -0.1803 0.0026 7 6 6.2746 0.9668 0.0085 8 6 7.7483 0.8480 0.0152 9 8 8.4386 1.8484 0.0199 10 7 8.3262 -0.3696 0.0161 11 6 9.7865 -0.4873 0.0233 12 6 10.1730 -1.9440 0.0235 13 1 9.4075 -2.7057 0.0191 14 6 11.5039 -2.3040 0.0292 15 7 11.8412 -3.5751 0.0298 16 14 12.8280 -0.9863 0.0374 17 1 13.1721 -0.6392 1.4397 18 1 14.0373 -1.4955 -0.6577 19 1 12.3269 0.2234 -0.6631 20 6 5.6734 2.2260 0.0071 21 6 4.2953 2.3297 0.0003 22 9 3.7104 3.5476 -0.0017 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.4890 -0.9513 -0.0088 29 1 5.9391 -1.1574 0.0037 30 1 7.7752 -1.1679 0.0127 31 1 10.1944 -0.0029 -0.8639 32 1 10.1855 -0.0058 0.9161 33 1 12.7775 -3.8284 0.0342 34 1 6.2834 3.1172 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:49 Heat of formation + Delta-G solvation = -104.150429 kcal Electronic energy + Delta-G solvation = -19192.468293 eV Core-core repulsion = 15811.954913 eV Total energy + Delta-G solvation = -3380.513381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.07043 -39.96006 -38.64606 -37.47822 -34.47033 -32.64499 -32.15269 -30.68692 -28.51789 -27.36596 -25.93403 -23.07659 -22.75146 -21.70404 -20.08138 -18.40862 -17.13057 -16.77556 -16.44123 -16.37044 -15.88888 -15.77250 -15.60882 -15.02511 -14.60145 -14.47572 -14.18082 -13.52645 -13.27106 -13.15580 -13.06946 -12.50328 -12.38037 -12.08391 -11.85074 -11.56152 -11.33563 -11.06141 -10.79865 -10.23369 -10.00243 -9.54662 -9.45718 -9.06284 -8.84040 -8.79002 -8.22761 -6.24059 -4.26955 0.65030 1.08265 2.95083 3.25088 3.25552 3.32270 3.40404 3.69032 3.86680 4.16091 4.31259 4.42393 4.69838 4.83351 4.91523 4.97376 5.03931 5.08579 5.11241 5.12718 5.24469 5.31315 5.61913 5.89926 5.95149 6.09233 6.19916 6.65950 6.73832 6.76340 7.01652 7.11054 7.32606 8.06027 8.42421 8.68492 8.80408 9.35268 10.87753 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.003734 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.703917 B = 7496.335640 C = 8327.276845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.105 3.895 4 C -0.111 4.111 5 C -0.076 4.076 6 C -0.096 4.096 7 C -0.093 4.093 8 C 0.541 3.459 9 O -0.550 6.550 10 N -0.694 5.694 11 C 0.219 3.781 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.097 4.097 21 C 0.093 3.907 22 F -0.138 7.138 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.397 0.603 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.714 7.921 -0.101 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.112 4.112 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.097 4.097 8 C 0.326 3.674 9 O -0.430 6.430 10 N -0.343 5.343 11 C 0.097 3.903 12 C -0.584 4.584 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.117 4.117 21 C 0.073 3.927 22 F -0.116 7.116 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.233 0.767 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.921 8.342 -0.099 22.523 hybrid contribution 0.210 0.586 0.027 0.623 sum -20.711 8.928 -0.072 22.553 Atomic orbital electron populations 1.22772 0.80381 1.03138 1.00171 1.87843 1.20090 1.26929 1.95521 1.21117 0.89301 0.85325 1.01339 1.19798 0.94710 0.92986 1.03698 1.20827 0.94134 0.96983 0.97403 1.21541 0.93629 0.98548 0.97766 1.20067 0.94316 0.93209 1.02062 1.18154 0.86662 0.84444 0.78098 1.90736 1.64348 1.36685 1.51236 1.46145 1.10157 1.06602 1.71359 1.19576 0.75353 0.98246 0.97094 1.21065 0.93876 0.89796 1.53623 0.90157 1.24787 0.98454 0.95519 0.93781 1.69875 1.18090 1.15620 1.49208 0.86817 0.81364 0.82430 0.79106 1.19792 1.20856 1.18457 1.21155 0.92210 0.99133 0.99203 1.17181 0.90749 0.79456 1.05276 1.91491 1.84414 1.41630 1.94081 0.93856 0.93864 0.89217 0.91433 0.91431 0.83455 0.84261 0.76749 0.95347 0.95812 0.92196 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.61 9.17 -35.23 -0.32 -3.93 16 3 C 0.11 0.97 5.90 36.01 0.21 1.18 16 4 C -0.11 -1.27 5.89 -104.47 -0.62 -1.88 16 5 C -0.08 -0.86 9.36 -39.65 -0.37 -1.23 16 6 C -0.10 -1.22 9.54 -39.18 -0.37 -1.60 16 7 C -0.09 -1.44 5.87 -104.97 -0.62 -2.05 16 8 C 0.54 10.58 7.77 -12.33 -0.10 10.48 16 9 O -0.55 -12.60 16.35 5.32 0.09 -12.51 16 10 N -0.69 -14.04 5.50 -62.42 -0.34 -14.39 16 11 C 0.22 5.34 4.50 -5.19 -0.02 5.31 16 12 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 16 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -6.25 6.54 56.52 0.37 -5.89 16 20 C -0.10 -1.40 9.57 -39.11 -0.37 -1.77 16 21 C 0.09 1.17 7.24 -39.48 -0.29 0.89 16 22 F -0.14 -1.68 16.79 2.25 0.04 -1.64 16 23 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.15 1.48 6.99 -52.48 -0.37 1.11 16 29 H 0.14 1.57 6.40 -52.49 -0.34 1.24 16 30 H 0.40 6.97 6.35 -40.82 -0.26 6.71 16 31 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 32 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.15 2.18 7.65 -52.49 -0.40 1.78 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -31.74 300.95 -5.59 -37.34 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.82 Total: 1.83 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.87 Total: -2.38 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.43 Total: -39.80 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.24 Total: -16.44 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.74 -5.59 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.814 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds