Wall clock time and date at job start Mon Mar 30 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00334 * 2 1 4 4 C 1.50706 * 109.47607 * 179.97438 * 3 2 1 5 5 C 1.38342 * 119.86442 * 0.25129 * 4 3 2 6 6 C 1.37940 * 120.17522 * 180.29822 * 5 4 3 7 7 C 1.39599 * 119.90240 * 359.72692 * 6 5 4 8 8 C 1.47854 * 120.13145 * 180.02562 * 7 6 5 9 9 O 1.21550 * 119.99556 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00001 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.46932 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00009 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99544 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99625 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00234 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.46851 * 89.99687 * 16 14 12 18 18 H 1.48493 * 109.46932 * 209.99857 * 16 14 12 19 19 H 1.48492 * 109.47183 * 330.00067 * 16 14 12 20 20 C 1.39529 * 119.73393 * 359.97438 * 7 6 5 21 21 C 1.38204 * 119.82840 * 0.02562 * 20 7 6 22 22 F 1.35104 * 119.95575 * 180.02562 * 21 20 7 23 23 H 1.08999 * 109.47207 * 300.00356 * 1 2 3 24 24 H 1.09001 * 109.46884 * 60.00082 * 1 2 3 25 25 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47141 * 59.99703 * 3 2 1 27 27 H 1.08998 * 109.47103 * 300.00008 * 3 2 1 28 28 H 1.08003 * 119.91247 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.05227 * 179.70037 * 6 5 4 30 30 H 0.97001 * 119.99540 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.46948 * 299.99766 * 11 10 8 32 32 H 1.09004 * 109.47459 * 59.99729 * 11 10 8 33 33 H 0.96998 * 119.99912 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.08323 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1046 -0.0639 -0.0042 6 6 5.4791 -0.1803 0.0026 7 6 6.2746 0.9668 0.0085 8 6 7.7483 0.8480 0.0152 9 8 8.4386 1.8484 0.0199 10 7 8.3262 -0.3696 0.0161 11 6 9.7865 -0.4873 0.0233 12 6 10.1730 -1.9440 0.0235 13 1 9.4075 -2.7057 0.0191 14 6 11.5039 -2.3040 0.0292 15 7 11.8412 -3.5751 0.0298 16 14 12.8280 -0.9863 0.0374 17 1 13.1721 -0.6392 1.4397 18 1 14.0373 -1.4955 -0.6577 19 1 12.3269 0.2234 -0.6631 20 6 5.6734 2.2260 0.0071 21 6 4.2953 2.3297 0.0003 22 9 3.7104 3.5476 -0.0017 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.4890 -0.9513 -0.0088 29 1 5.9391 -1.1574 0.0037 30 1 7.7752 -1.1679 0.0127 31 1 10.1944 -0.0029 -0.8639 32 1 10.1855 -0.0058 0.9161 33 1 12.7775 -3.8284 0.0342 34 1 6.2834 3.1172 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:48 Heat of formation + Delta-G solvation = -125.791801 kcal Electronic energy + Delta-G solvation = -19193.406734 eV Core-core repulsion = 15811.954913 eV Total energy + Delta-G solvation = -3381.451821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.05017 -41.25301 -39.73727 -38.38235 -36.29663 -34.52108 -33.32576 -31.76727 -30.15549 -28.34603 -26.73804 -24.56879 -23.78582 -23.19868 -21.55024 -19.86555 -18.54123 -18.03510 -17.40116 -17.19096 -17.18170 -16.79857 -16.47213 -16.44826 -16.22474 -16.05243 -15.28772 -14.90815 -14.42150 -14.38119 -14.28617 -14.10531 -13.85822 -13.07921 -12.96261 -12.83248 -12.69715 -12.46132 -12.13860 -11.93199 -11.66363 -11.09201 -10.92152 -10.85380 -10.15921 -10.01118 -9.73993 -8.39840 -6.47228 -0.44663 0.06357 1.33753 1.36222 1.48417 1.67676 2.21027 2.28915 2.60230 2.60754 2.95766 3.12515 3.49536 3.69669 3.84220 3.99234 4.08616 4.34179 4.34904 4.53354 4.59585 4.62148 4.74150 4.89093 4.93525 4.98553 4.99855 5.11846 5.16690 5.24489 5.39463 5.67262 6.06600 6.14230 6.52210 6.71594 7.11111 7.26550 8.74677 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.003734 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.703917 B = 7496.335640 C = 8327.276845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.105 3.895 4 C -0.097 4.097 5 C -0.070 4.070 6 C -0.086 4.086 7 C -0.114 4.114 8 C 0.544 3.456 9 O -0.589 6.589 10 N -0.694 5.694 11 C 0.230 3.770 12 C -0.548 4.548 13 H 0.062 0.938 14 C 0.028 3.972 15 N -0.929 5.929 16 Si 0.936 3.064 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.260 1.260 20 C -0.103 4.103 21 C 0.092 3.908 22 F -0.134 7.134 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.168 0.832 29 H 0.152 0.848 30 H 0.410 0.590 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.273 0.727 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.657 8.383 -0.074 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.029 3.971 4 C -0.099 4.099 5 C -0.088 4.088 6 C -0.105 4.105 7 C -0.117 4.117 8 C 0.332 3.668 9 O -0.472 6.472 10 N -0.343 5.343 11 C 0.107 3.893 12 C -0.586 4.586 13 H 0.081 0.919 14 C -0.172 4.172 15 N -0.568 5.568 16 Si 0.759 3.241 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.184 1.184 20 C -0.123 4.123 21 C 0.072 3.928 22 F -0.113 7.113 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.170 0.830 30 H 0.247 0.753 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.905 8.792 -0.072 24.535 hybrid contribution 0.628 0.416 0.017 0.754 sum -22.277 9.208 -0.055 24.105 Atomic orbital electron populations 1.22970 0.78689 1.04223 1.01156 1.87800 1.21912 1.26833 1.95717 1.21187 0.87517 0.85825 1.02620 1.20124 0.96262 0.92374 1.01099 1.21029 0.93490 0.97770 0.96526 1.21674 0.94155 0.98130 0.96531 1.19671 0.91666 0.94676 1.05686 1.18694 0.88392 0.83300 0.76449 1.90703 1.65779 1.37768 1.52917 1.45944 1.08698 1.07771 1.71911 1.19202 0.77869 0.96156 0.96120 1.21259 0.93692 0.90761 1.52863 0.91943 1.25571 1.00733 0.97395 0.93528 1.69973 1.18898 1.17407 1.50513 0.85879 0.78914 0.79772 0.79487 1.18970 1.19829 1.18406 1.21108 0.93139 0.98473 0.99580 1.17096 0.90088 0.80046 1.05521 1.91500 1.84168 1.41540 1.94077 0.92873 0.92877 0.88188 0.90062 0.90052 0.81495 0.83000 0.75258 0.96486 0.96603 0.91795 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -6.24 9.17 -148.98 -1.37 -7.61 16 3 C 0.10 1.58 5.90 71.24 0.42 2.00 16 4 C -0.10 -1.97 5.89 -19.76 -0.12 -2.09 16 5 C -0.07 -1.42 9.36 22.22 0.21 -1.21 16 6 C -0.09 -2.05 9.54 22.53 0.21 -1.83 16 7 C -0.11 -3.44 5.87 -20.09 -0.12 -3.56 16 8 C 0.54 21.38 7.77 86.79 0.67 22.06 16 9 O -0.59 -27.47 16.35 -3.87 -0.06 -27.53 16 10 N -0.69 -28.13 5.50 -469.69 -2.58 -30.71 16 11 C 0.23 11.26 4.50 85.63 0.38 11.65 16 12 C -0.55 -29.94 9.83 25.60 0.25 -29.69 16 13 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 14 C 0.03 1.59 5.47 84.66 0.46 2.05 16 15 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16 16 Si 0.94 43.74 27.47 68.60 1.88 45.63 16 17 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 20 C -0.10 -2.91 9.57 22.57 0.22 -2.70 16 21 C 0.09 2.16 7.24 22.34 0.16 2.33 16 22 F -0.13 -3.04 16.79 44.97 0.75 -2.29 16 23 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.17 2.79 6.99 -2.91 -0.02 2.76 16 29 H 0.15 3.16 6.40 -2.91 -0.02 3.14 16 30 H 0.41 14.27 6.35 -92.71 -0.59 13.68 16 31 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 32 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.14 4.16 7.65 -2.91 -0.02 4.13 16 Total: -1.00 -67.77 300.95 3.42 -64.34 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.49 Total: 12.41 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.01 Total: 0.48 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.28 Total: -85.43 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.43 Total: -35.14 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.75 Total: -2.29 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -67.77 3.42 -64.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.449 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds