Wall clock time and date at job start Mon Mar 30 2020 00:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46896 * 2 1 4 4 O 1.45200 * 109.46472 * 240.00335 * 2 1 3 5 5 C 1.34228 * 117.00180 * 90.00088 * 4 2 1 6 6 O 1.20832 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00172 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47216 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47216 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99926 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99891 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99518 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00084 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47345 * 90.00285 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00382 * 13 11 9 16 16 H 1.48500 * 109.47268 * 330.00264 * 13 11 9 17 17 C 1.50696 * 109.47320 * 119.99982 * 2 1 3 18 18 C 1.38750 * 120.38910 * 264.97867 * 17 2 1 19 19 C 1.38507 * 118.44905 * 179.77542 * 18 17 2 20 20 C 1.38564 * 119.13659 * 0.48533 * 19 18 17 21 21 F 1.35104 * 119.64718 * 179.77395 * 20 19 18 22 22 N 1.32029 * 120.70121 * 359.50630 * 20 19 18 23 23 C 1.31933 * 121.68696 * 0.24309 * 22 20 19 24 24 H 1.09004 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47276 * 299.99634 * 1 2 3 26 26 H 1.08998 * 109.47674 * 59.99849 * 1 2 3 27 27 H 1.09001 * 109.46870 * 300.00124 * 7 5 4 28 28 H 1.08994 * 109.47058 * 59.99479 * 7 5 4 29 29 H 1.08994 * 109.47068 * 300.00102 * 8 7 5 30 30 H 1.09009 * 109.46984 * 60.00062 * 8 7 5 31 31 H 0.97000 * 119.99572 * 179.97438 * 12 11 9 32 32 H 1.08000 * 120.77116 * 0.02595 * 18 17 2 33 33 H 1.08001 * 120.42757 * 180.26644 * 19 18 17 34 34 H 1.07998 * 119.59906 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 0.0641 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7190 -0.5769 -3.5493 8 6 2.8629 0.4891 -4.6373 9 6 3.3655 -0.1518 -5.9053 10 1 3.5630 -1.2132 -5.9322 11 6 3.5742 0.6172 -7.0305 12 7 4.0133 0.0579 -8.1369 13 14 3.2333 2.4531 -6.9836 14 1 4.4623 3.1744 -6.5662 15 1 2.8228 2.9150 -8.3339 16 1 2.1435 2.7296 -6.0134 17 6 2.0324 -0.7104 1.2304 18 6 2.3652 0.0088 2.3694 19 6 2.8183 -0.6853 3.4790 20 6 2.9330 -2.0646 3.4116 21 9 3.3783 -2.7515 4.4864 22 7 2.6069 -2.7150 2.3099 23 6 2.1673 -2.0848 1.2374 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.6881 -1.0399 -3.3634 28 1 2.0102 -1.3371 -3.8774 29 1 1.8936 0.9517 -4.8231 30 1 3.5716 1.2496 -4.3093 31 1 4.1598 0.5988 -8.9286 32 1 2.2692 1.0843 2.3915 33 1 3.0821 -0.1580 4.3839 34 1 1.9098 -2.6506 0.3543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870495399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:03 Heat of formation + Delta-G solvation = -104.447229 kcal Electronic energy + Delta-G solvation = -19257.054466 eV Core-core repulsion = 15876.528215 eV Total energy + Delta-G solvation = -3380.526251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.31346 -40.84981 -39.94978 -36.71608 -33.88947 -33.63219 -32.44235 -31.41207 -29.63831 -26.65568 -24.73227 -24.35740 -22.52043 -21.18662 -19.88404 -18.42624 -17.96931 -17.23960 -16.98709 -16.38492 -16.29669 -16.02311 -15.00939 -14.69339 -14.24870 -14.15213 -13.98769 -13.58192 -13.47172 -13.21744 -13.11169 -12.66629 -12.46271 -12.11695 -11.62684 -11.42100 -11.07199 -10.78458 -10.39844 -10.34380 -10.21155 -10.01484 -9.98698 -9.76495 -9.30148 -9.24126 -8.59165 -6.10436 -4.10656 0.47945 0.71023 2.57274 2.77086 3.20844 3.23861 3.31183 3.38467 3.46446 4.05288 4.27119 4.42755 4.45518 4.49075 4.81142 4.88468 4.98594 5.12506 5.24168 5.32498 5.42311 5.50380 5.55741 5.75700 5.89412 5.93667 5.98052 6.21678 6.40637 6.67523 7.18259 7.25743 7.28188 7.66650 8.08879 8.43092 8.91927 9.51064 11.02159 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037667 B = 0.003442 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.170622 B = 8133.293625 C = 8439.789257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 H 0.097 0.903 4 O -0.357 6.357 5 C 0.461 3.539 6 O -0.509 6.509 7 C -0.096 4.096 8 C -0.002 4.002 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.149 4.149 18 C -0.036 4.036 19 C -0.194 4.194 20 C 0.306 3.694 21 F -0.113 7.113 22 N -0.513 5.513 23 C 0.165 3.835 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 -0.662 22.966 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.115 0.885 4 O -0.275 6.275 5 C 0.305 3.695 6 O -0.395 6.395 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.151 4.151 18 C -0.061 4.061 19 C -0.215 4.215 20 C 0.153 3.847 21 F -0.092 7.092 22 N -0.227 5.227 23 C 0.009 3.991 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.602 -1.190 22.862 23.569 hybrid contribution -0.079 1.790 0.240 1.807 sum -5.681 0.600 23.102 23.798 Atomic orbital electron populations 1.22188 0.92938 1.03501 1.03490 1.21190 0.94645 0.96392 0.80400 0.88483 1.86615 1.77572 1.42994 1.20320 1.24795 0.73471 0.86277 0.84987 1.90617 1.48026 1.17009 1.83874 1.21573 1.02580 1.01437 0.87736 1.19484 0.97944 0.93730 0.92765 1.21025 1.44896 0.96924 0.93760 0.90619 1.24959 0.94263 0.98640 0.95244 1.69903 1.45725 1.36246 1.01913 0.86801 0.79584 0.85749 0.77433 1.20175 1.21303 1.18612 1.20754 1.02866 0.95646 0.95880 1.21339 0.92867 1.01046 0.90866 1.21786 1.05226 0.92918 1.01565 1.18267 0.95433 0.87150 0.83889 1.91632 1.85958 1.80687 1.50950 1.67136 1.13835 1.41939 0.99748 1.22518 0.91041 0.91293 0.94284 0.91214 0.90791 0.90897 0.88234 0.88130 0.95580 0.96079 0.92562 0.83346 0.83177 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.53 37.16 0.35 -1.20 16 2 C 0.13 1.44 2.79 -27.88 -0.08 1.37 16 3 H 0.10 1.13 7.08 -51.93 -0.37 0.77 16 4 O -0.36 -4.94 9.05 -39.25 -0.36 -5.30 16 5 C 0.46 7.86 7.93 36.01 0.29 8.15 16 6 O -0.51 -9.95 15.20 -18.76 -0.29 -10.23 16 7 C -0.10 -1.76 5.75 -27.88 -0.16 -1.92 16 8 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 9 C -0.53 -14.59 9.66 -34.44 -0.33 -14.92 16 10 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 13 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 17 C -0.15 -1.47 5.02 -104.48 -0.52 -2.00 16 18 C -0.04 -0.28 9.84 -39.29 -0.39 -0.67 16 19 C -0.19 -1.56 10.09 -39.36 -0.40 -1.96 16 20 C 0.31 3.30 8.41 -17.35 -0.15 3.15 16 21 F -0.11 -1.25 17.29 2.25 0.04 -1.21 16 22 N -0.51 -6.24 10.37 -13.59 -0.14 -6.38 16 23 C 0.17 1.79 10.51 -17.56 -0.18 1.60 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 30 H 0.02 0.51 7.53 -51.92 -0.39 0.12 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.18 1.72 7.63 -52.49 -0.40 1.32 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -32.19 304.94 -5.88 -38.07 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.08 Total: -3.54 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.76 Total: -6.60 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.63 Total: -32.86 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.64 Total: -15.53 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.19 -5.88 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870495399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.381 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds