Wall clock time and date at job start Mon Mar 30 2020 00:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46896 * 2 1 4 4 O 1.45200 * 109.46472 * 240.00335 * 2 1 3 5 5 C 1.34228 * 117.00180 * 90.00088 * 4 2 1 6 6 O 1.20832 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00172 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47216 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47216 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99926 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99891 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99518 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00084 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47345 * 90.00285 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00382 * 13 11 9 16 16 H 1.48500 * 109.47268 * 330.00264 * 13 11 9 17 17 C 1.50696 * 109.47320 * 119.99982 * 2 1 3 18 18 C 1.38750 * 120.38910 * 264.97867 * 17 2 1 19 19 C 1.38507 * 118.44905 * 179.77542 * 18 17 2 20 20 C 1.38564 * 119.13659 * 0.48533 * 19 18 17 21 21 F 1.35104 * 119.64718 * 179.77395 * 20 19 18 22 22 N 1.32029 * 120.70121 * 359.50630 * 20 19 18 23 23 C 1.31933 * 121.68696 * 0.24309 * 22 20 19 24 24 H 1.09004 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47276 * 299.99634 * 1 2 3 26 26 H 1.08998 * 109.47674 * 59.99849 * 1 2 3 27 27 H 1.09001 * 109.46870 * 300.00124 * 7 5 4 28 28 H 1.08994 * 109.47058 * 59.99479 * 7 5 4 29 29 H 1.08994 * 109.47068 * 300.00102 * 8 7 5 30 30 H 1.09009 * 109.46984 * 60.00062 * 8 7 5 31 31 H 0.97000 * 119.99572 * 179.97438 * 12 11 9 32 32 H 1.08000 * 120.77116 * 0.02595 * 18 17 2 33 33 H 1.08001 * 120.42757 * 180.26644 * 19 18 17 34 34 H 1.07998 * 119.59906 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 0.0641 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7190 -0.5769 -3.5493 8 6 2.8629 0.4891 -4.6373 9 6 3.3655 -0.1518 -5.9053 10 1 3.5630 -1.2132 -5.9322 11 6 3.5742 0.6172 -7.0305 12 7 4.0133 0.0579 -8.1369 13 14 3.2333 2.4531 -6.9836 14 1 4.4623 3.1744 -6.5662 15 1 2.8228 2.9150 -8.3339 16 1 2.1435 2.7296 -6.0134 17 6 2.0324 -0.7104 1.2304 18 6 2.3652 0.0088 2.3694 19 6 2.8183 -0.6853 3.4790 20 6 2.9330 -2.0646 3.4116 21 9 3.3783 -2.7515 4.4864 22 7 2.6069 -2.7150 2.3099 23 6 2.1673 -2.0848 1.2374 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.6881 -1.0399 -3.3634 28 1 2.0102 -1.3371 -3.8774 29 1 1.8936 0.9517 -4.8231 30 1 3.5716 1.2496 -4.3093 31 1 4.1598 0.5988 -8.9286 32 1 2.2692 1.0843 2.3915 33 1 3.0821 -0.1580 4.3839 34 1 1.9098 -2.6506 0.3543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870495399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:03 Heat of formation + Delta-G solvation = -123.739413 kcal Electronic energy + Delta-G solvation = -19257.891038 eV Core-core repulsion = 15876.528215 eV Total energy + Delta-G solvation = -3381.362823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.10485 -41.85542 -40.97723 -37.93242 -35.61556 -34.74017 -33.45863 -33.06986 -30.42489 -28.44103 -25.61319 -25.14628 -23.90459 -22.37775 -21.31934 -19.42416 -19.17201 -18.65949 -17.91953 -17.69348 -17.33277 -17.13081 -16.28663 -15.87079 -15.55947 -15.34049 -14.94665 -14.71592 -14.60131 -14.26942 -14.18580 -13.92356 -13.66985 -13.39741 -12.98076 -12.91781 -12.34656 -12.20032 -12.01359 -11.85188 -11.77742 -11.44999 -11.34864 -11.06663 -10.77742 -10.76136 -10.01052 -8.30613 -6.35022 -0.27708 0.03158 1.22815 1.36061 1.38191 1.51362 1.63425 2.35782 2.45080 2.49529 3.05065 3.29489 3.53214 3.72667 3.75658 3.91950 4.06251 4.16376 4.28634 4.35940 4.41715 4.64429 4.68164 4.75615 4.81490 4.88337 5.04473 5.14637 5.28323 5.38893 5.40142 5.50685 5.60577 6.22540 6.51932 6.70620 6.81529 7.30254 8.85074 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037667 B = 0.003442 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.170622 B = 8133.293625 C = 8439.789257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.097 0.903 4 O -0.351 6.351 5 C 0.474 3.526 6 O -0.535 6.535 7 C -0.094 4.094 8 C 0.002 3.998 9 C -0.532 4.532 10 H 0.050 0.950 11 C 0.012 3.988 12 N -0.944 5.944 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.254 1.254 17 C -0.151 4.151 18 C -0.026 4.026 19 C -0.178 4.178 20 C 0.285 3.715 21 F -0.121 7.121 22 N -0.544 5.544 23 C 0.153 3.847 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.020 0.980 30 H 0.016 0.984 31 H 0.268 0.732 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 0.944 25.032 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.072 3.928 3 H 0.115 0.885 4 O -0.268 6.268 5 C 0.319 3.681 6 O -0.424 6.424 7 C -0.131 4.131 8 C -0.035 4.035 9 C -0.570 4.570 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.584 5.584 13 Si 0.765 3.235 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.178 1.178 17 C -0.154 4.154 18 C -0.052 4.052 19 C -0.199 4.199 20 C 0.132 3.868 21 F -0.100 7.100 22 N -0.259 5.259 23 C -0.003 4.003 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.199 0.801 33 H 0.200 0.800 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.228 0.393 24.957 25.725 hybrid contribution 0.118 1.191 -0.316 1.238 sum -6.110 1.584 24.641 25.436 Atomic orbital electron populations 1.22195 0.91582 1.04041 1.03991 1.21456 0.95752 0.96185 0.79394 0.88494 1.86570 1.77178 1.42622 1.20460 1.24213 0.72933 0.85637 0.85345 1.90610 1.49342 1.17980 1.84468 1.21344 1.03973 1.00197 0.87588 1.19320 0.96956 0.94700 0.92559 1.21367 1.44061 0.96035 0.95552 0.93221 1.25840 0.94314 1.03411 0.94971 1.70031 1.47478 1.38130 1.02807 0.85793 0.79812 0.80156 0.77764 1.19322 1.20653 1.17825 1.20694 1.03406 0.95243 0.96033 1.21715 0.91196 1.02541 0.89714 1.22096 1.03467 0.91603 1.02707 1.18623 0.96274 0.88330 0.83578 1.91612 1.86161 1.81059 1.51147 1.67039 1.14975 1.43211 1.00628 1.22550 0.91699 0.91926 0.94173 0.90700 0.88213 0.92426 0.87090 0.86767 0.96209 0.96515 0.92342 0.80068 0.79954 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.53 71.98 0.69 -1.99 16 2 C 0.13 2.55 2.79 29.85 0.08 2.63 16 3 H 0.10 2.01 7.08 -2.39 -0.02 1.99 16 4 O -0.35 -9.13 9.05 -51.40 -0.47 -9.60 16 5 C 0.47 15.46 7.93 71.24 0.56 16.02 16 6 O -0.53 -20.08 15.20 21.94 0.33 -19.75 16 7 C -0.09 -3.35 5.75 29.85 0.17 -3.18 16 8 C 0.00 0.10 3.33 29.85 0.10 0.20 16 9 C -0.53 -29.65 9.66 25.60 0.25 -29.40 16 10 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 11 C 0.01 0.72 5.47 84.66 0.46 1.18 16 12 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 13 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 17 C -0.15 -2.64 5.02 -19.77 -0.10 -2.74 16 18 C -0.03 -0.32 9.84 22.46 0.22 -0.10 16 19 C -0.18 -2.30 10.09 22.41 0.23 -2.08 16 20 C 0.28 5.73 8.41 84.74 0.71 6.45 16 21 F -0.12 -2.55 17.29 44.97 0.78 -1.77 16 22 N -0.54 -12.87 10.37 -196.92 -2.04 -14.91 16 23 C 0.15 3.14 10.51 84.65 0.89 4.03 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 29 H 0.02 0.93 7.16 -2.39 -0.02 0.92 16 30 H 0.02 0.78 7.53 -2.38 -0.02 0.76 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.18 3.37 7.63 -2.91 -0.02 3.35 16 Total: -1.00 -69.72 304.94 6.11 -63.61 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.05 Total: 2.66 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.27 Total: -8.98 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.74 Total: -72.69 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.13 Total: -29.35 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -69.72 6.11 -63.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870495399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.128 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds