Wall clock time and date at job start Mon Mar 30 2020 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47175 * 2 1 4 4 C 1.34774 * 119.99589 * 80.24510 * 3 2 1 5 5 O 1.21762 * 119.99969 * 182.18347 * 4 3 2 6 6 C 1.46237 * 120.00470 * 2.18465 * 4 3 2 7 7 S 1.75675 * 125.22331 * 352.42261 * 6 4 3 8 8 C 1.75479 * 92.08787 * 179.97438 * 7 6 4 9 9 C 1.32759 * 111.36468 * 359.73892 * 8 7 6 10 10 C 1.39546 * 125.23273 * 172.40566 * 6 4 3 11 11 C 1.40538 * 123.71232 * 359.97438 * 10 6 4 12 12 H 1.08000 * 119.99768 * 24.54815 * 11 10 6 13 13 C 1.40300 * 119.99984 * 204.54726 * 11 10 6 14 14 N 1.30645 * 120.00074 * 193.03818 * 13 11 10 15 15 Si 1.86800 * 120.00156 * 13.04500 * 13 11 10 16 16 H 1.48504 * 109.46697 * 263.45473 * 15 13 11 17 17 H 1.48501 * 109.46962 * 23.44929 * 15 13 11 18 18 H 1.48500 * 109.47544 * 143.45404 * 15 13 11 19 19 C 1.46499 * 120.00355 * 260.24796 * 3 2 1 20 20 C 1.53007 * 109.46575 * 299.99884 * 19 3 2 21 21 C 1.52996 * 109.47234 * 59.99679 * 19 3 2 22 22 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46695 * 299.99285 * 1 2 3 24 24 H 1.08997 * 109.47574 * 59.99656 * 1 2 3 25 25 H 1.09008 * 109.46875 * 240.00129 * 2 1 3 26 26 H 1.09000 * 109.47349 * 120.00830 * 2 1 3 27 27 H 1.07996 * 124.31238 * 180.02562 * 8 7 6 28 28 H 1.08002 * 122.78810 * 180.23647 * 9 8 7 29 29 H 0.97000 * 119.99875 * 354.71195 * 14 13 11 30 30 H 1.08996 * 109.47550 * 180.02562 * 19 3 2 31 31 H 1.08997 * 109.47487 * 60.00315 * 20 19 3 32 32 H 1.09004 * 109.46728 * 180.02562 * 20 19 3 33 33 H 1.09001 * 109.47306 * 299.99347 * 20 19 3 34 34 H 1.08999 * 109.47638 * 60.00120 * 21 19 3 35 35 H 1.09000 * 109.47219 * 180.02562 * 21 19 3 36 36 H 1.09007 * 109.47299 * 300.00013 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0565 2.0824 1.1503 5 8 2.4248 3.2430 1.1440 6 6 1.6557 1.4494 2.4062 7 16 0.9279 -0.1429 2.5512 8 6 0.8266 -0.0081 4.2979 9 6 1.3138 1.1516 4.7225 10 6 1.7927 2.0172 3.6736 11 6 2.3432 3.2898 3.9027 12 1 2.3235 4.0353 3.1216 13 6 2.9185 3.5917 5.1463 14 7 3.1977 4.8305 5.4533 15 14 3.2852 2.2225 6.3629 16 1 2.1712 2.1163 7.3391 17 1 3.4281 0.9371 5.6331 18 1 4.5477 2.5256 7.0836 19 6 2.4652 2.0002 -1.2503 20 6 3.6309 1.1960 -1.8294 21 6 1.3094 2.0169 -2.2527 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 0.4239 -0.7730 4.9452 28 1 1.3452 1.4256 5.7667 29 1 3.0792 5.5321 4.7941 30 1 2.7910 3.0217 -1.0540 31 1 3.3056 0.1744 -2.0257 32 1 3.9637 1.6568 -2.7595 33 1 4.4544 1.1842 -1.1153 34 1 0.4788 2.5897 -1.8402 35 1 1.6420 2.4770 -3.1831 36 1 0.9840 0.9952 -2.4491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875199820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:59 Heat of formation + Delta-G solvation = -15.350350 kcal Electronic energy + Delta-G solvation = -18913.528114 eV Core-core repulsion = 16103.078570 eV Total energy + Delta-G solvation = -2810.449544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07256 -36.66440 -35.30740 -33.32004 -32.84416 -29.39675 -28.91306 -26.99960 -26.23140 -23.01669 -22.14832 -21.23588 -19.44306 -18.70764 -17.18803 -16.84436 -15.52518 -14.90017 -14.70749 -14.23516 -13.90349 -13.59603 -13.26398 -13.20312 -12.68841 -12.54532 -12.48388 -12.14982 -11.87791 -11.74148 -11.66670 -11.27779 -11.01214 -10.97793 -10.96161 -10.48129 -10.38342 -9.90638 -9.88161 -9.30614 -9.26081 -8.43033 -7.95323 -7.73222 -7.45173 -7.09747 -4.58501 1.96289 2.98103 2.99719 3.21838 3.36346 3.47358 3.59208 3.79383 3.86250 4.37226 5.10555 5.13955 5.34680 5.36507 5.52621 5.70879 5.73983 5.76466 5.82243 5.84622 5.94752 6.03249 6.12022 6.17771 6.25999 6.41016 6.48817 6.65882 6.72516 6.97314 7.11908 7.35742 7.40854 7.54661 8.15087 8.30046 8.52125 8.71172 9.52586 9.78956 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.007708 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.420847 B = 3631.609107 C = 4429.899274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 N -0.625 5.625 4 C 0.601 3.399 5 O -0.563 6.563 6 C -0.437 4.437 7 S 0.024 5.976 8 C -0.216 4.216 9 C -0.163 4.163 10 C 0.115 3.885 11 C -0.429 4.429 12 H 0.110 0.890 13 C 0.033 3.967 14 N -0.786 5.786 15 Si 1.068 2.932 16 H -0.274 1.274 17 H -0.255 1.255 18 H -0.284 1.284 19 C 0.136 3.864 20 C -0.158 4.158 21 C -0.157 4.157 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.294 0.706 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -9.465 -7.601 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 N -0.360 5.360 4 C 0.400 3.600 5 O -0.446 6.446 6 C -0.555 4.555 7 S 0.283 5.717 8 C -0.349 4.349 9 C -0.196 4.196 10 C 0.104 3.896 11 C -0.460 4.460 12 H 0.128 0.872 13 C -0.190 4.190 14 N -0.408 5.408 15 Si 0.893 3.107 16 H -0.201 1.201 17 H -0.179 1.179 18 H -0.211 1.211 19 C 0.032 3.968 20 C -0.217 4.217 21 C -0.215 4.215 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.156 0.844 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.139 -10.117 -7.063 12.522 hybrid contribution -0.356 1.348 -0.478 1.474 sum -2.495 -8.769 -7.542 11.832 Atomic orbital electron populations 1.22572 0.96306 1.01975 1.03031 1.21613 0.94566 0.84041 1.02209 1.47732 1.67562 1.13430 1.07257 1.16866 0.76603 0.84888 0.81647 1.90650 1.51200 1.17015 1.85703 1.22489 1.37176 0.99928 0.95910 1.83532 1.69149 1.20466 0.98530 1.25648 1.06192 1.00600 1.02440 1.21306 1.03673 0.95595 0.98997 1.17925 0.90725 0.92006 0.88914 1.21071 1.26916 0.97750 1.00216 0.87192 1.27644 0.91961 1.00594 0.98804 1.70411 1.32458 1.01144 1.36776 0.83785 0.77072 0.75045 0.74768 1.20093 1.17947 1.21126 1.20796 0.93267 0.98810 0.83944 1.22150 0.98692 1.00159 1.00665 1.22182 0.99040 1.01683 0.98613 0.92142 0.89953 0.93047 0.91059 0.89122 0.84437 0.86584 0.89366 0.88570 0.92785 0.92197 0.92357 0.92493 0.92372 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.67 37.16 0.32 -2.36 16 2 C 0.10 1.63 4.81 -4.04 -0.02 1.61 16 3 N -0.62 -12.06 2.39 -167.79 -0.40 -12.47 16 4 C 0.60 14.75 7.52 -13.05 -0.10 14.66 16 5 O -0.56 -15.75 13.80 5.13 0.07 -15.68 16 6 C -0.44 -10.74 6.12 -35.88 -0.22 -10.96 16 7 S 0.02 0.48 15.20 -107.50 -1.63 -1.16 16 8 C -0.22 -4.34 11.07 28.86 0.32 -4.02 16 9 C -0.16 -3.74 7.24 -39.12 -0.28 -4.02 16 10 C 0.12 3.00 5.33 -106.21 -0.57 2.44 16 11 C -0.43 -11.97 8.97 -37.94 -0.34 -12.31 16 12 H 0.11 3.39 6.18 -52.49 -0.32 3.07 16 13 C 0.03 0.87 5.51 -17.28 -0.10 0.78 16 14 N -0.79 -20.90 13.64 55.57 0.76 -20.14 16 15 Si 1.07 23.16 24.82 -169.99 -4.22 18.94 16 16 H -0.27 -5.50 6.87 56.52 0.39 -5.11 16 17 H -0.25 -5.47 6.19 56.52 0.35 -5.12 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.14 2.25 3.23 -67.93 -0.22 2.03 16 20 C -0.16 -2.15 9.19 37.16 0.34 -1.81 16 21 C -0.16 -2.13 8.37 37.16 0.31 -1.81 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.46 5.67 -36.77 -0.21 1.25 16 24 H 0.05 0.72 6.56 -51.93 -0.34 0.38 16 25 H 0.07 0.96 6.38 -51.92 -0.33 0.62 16 26 H 0.09 1.58 4.64 -22.89 -0.11 1.48 16 27 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 28 H 0.12 2.52 4.24 -52.49 -0.22 2.29 16 29 H 0.29 7.74 8.73 -40.82 -0.36 7.39 16 30 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 31 H 0.05 0.66 6.69 -51.93 -0.35 0.31 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.67 6.83 -51.93 -0.35 0.32 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -29.65 287.63 -5.99 -35.64 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.35 Total: 6.32 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.55 Total: -15.79 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.36 Total: -32.61 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.22 Total: 18.94 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.63 Total: -1.16 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.65 -5.99 -35.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875199820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.288 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds