Wall clock time and date at job start Mon Mar 30 2020 00:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46499 * 109.47175 * 2 1
4 4 C 1.34774 * 119.99589 * 80.24510 * 3 2 1
5 5 O 1.21762 * 119.99969 * 182.18347 * 4 3 2
6 6 C 1.46237 * 120.00470 * 2.18465 * 4 3 2
7 7 S 1.75675 * 125.22331 * 352.42261 * 6 4 3
8 8 C 1.75479 * 92.08787 * 179.97438 * 7 6 4
9 9 C 1.32759 * 111.36468 * 359.73892 * 8 7 6
10 10 C 1.39546 * 125.23273 * 172.40566 * 6 4 3
11 11 C 1.40538 * 123.71232 * 359.97438 * 10 6 4
12 12 H 1.08000 * 119.99768 * 24.54815 * 11 10 6
13 13 C 1.40300 * 119.99984 * 204.54726 * 11 10 6
14 14 N 1.30645 * 120.00074 * 193.03818 * 13 11 10
15 15 Si 1.86800 * 120.00156 * 13.04500 * 13 11 10
16 16 H 1.48504 * 109.46697 * 263.45473 * 15 13 11
17 17 H 1.48501 * 109.46962 * 23.44929 * 15 13 11
18 18 H 1.48500 * 109.47544 * 143.45404 * 15 13 11
19 19 C 1.46499 * 120.00355 * 260.24796 * 3 2 1
20 20 C 1.53007 * 109.46575 * 299.99884 * 19 3 2
21 21 C 1.52996 * 109.47234 * 59.99679 * 19 3 2
22 22 H 1.09002 * 109.47012 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.46695 * 299.99285 * 1 2 3
24 24 H 1.08997 * 109.47574 * 59.99656 * 1 2 3
25 25 H 1.09008 * 109.46875 * 240.00129 * 2 1 3
26 26 H 1.09000 * 109.47349 * 120.00830 * 2 1 3
27 27 H 1.07996 * 124.31238 * 180.02562 * 8 7 6
28 28 H 1.08002 * 122.78810 * 180.23647 * 9 8 7
29 29 H 0.97000 * 119.99875 * 354.71195 * 14 13 11
30 30 H 1.08996 * 109.47550 * 180.02562 * 19 3 2
31 31 H 1.08997 * 109.47487 * 60.00315 * 20 19 3
32 32 H 1.09004 * 109.46728 * 180.02562 * 20 19 3
33 33 H 1.09001 * 109.47306 * 299.99347 * 20 19 3
34 34 H 1.08999 * 109.47638 * 60.00120 * 21 19 3
35 35 H 1.09000 * 109.47219 * 180.02562 * 21 19 3
36 36 H 1.09007 * 109.47299 * 300.00013 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.0565 2.0824 1.1503
5 8 2.4248 3.2430 1.1440
6 6 1.6557 1.4494 2.4062
7 16 0.9279 -0.1429 2.5512
8 6 0.8266 -0.0081 4.2979
9 6 1.3138 1.1516 4.7225
10 6 1.7927 2.0172 3.6736
11 6 2.3432 3.2898 3.9027
12 1 2.3235 4.0353 3.1216
13 6 2.9185 3.5917 5.1463
14 7 3.1977 4.8305 5.4533
15 14 3.2852 2.2225 6.3629
16 1 2.1712 2.1163 7.3391
17 1 3.4281 0.9371 5.6331
18 1 4.5477 2.5256 7.0836
19 6 2.4652 2.0002 -1.2503
20 6 3.6309 1.1960 -1.8294
21 6 1.3094 2.0169 -2.2527
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5137 0.8901
24 1 -0.3634 0.5139 -0.8899
25 1 1.8933 -0.5139 -0.8901
26 1 1.8934 -0.5140 0.8899
27 1 0.4239 -0.7730 4.9452
28 1 1.3452 1.4256 5.7667
29 1 3.0792 5.5321 4.7941
30 1 2.7910 3.0217 -1.0540
31 1 3.3056 0.1744 -2.0257
32 1 3.9637 1.6568 -2.7595
33 1 4.4544 1.1842 -1.1153
34 1 0.4788 2.5897 -1.8402
35 1 1.6420 2.4770 -3.1831
36 1 0.9840 0.9952 -2.4491
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000875199820.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:58
Heat of formation + Delta-G solvation = -35.245411 kcal
Electronic energy + Delta-G solvation = -18914.390829 eV
Core-core repulsion = 16103.078570 eV
Total energy + Delta-G solvation = -2811.312259 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.77151 -38.40791 -37.11109 -35.21181 -34.17567 -30.87572 -30.70016 -28.13664
-28.08367 -24.41485 -23.83572 -22.87575 -21.18662 -20.34972 -18.82600 -18.65879
-17.13365 -16.60908 -16.29265 -15.79927 -15.49495 -15.01894 -14.98431 -14.86904
-14.25396 -14.09965 -13.78138 -13.53418 -13.43182 -13.29217 -13.04177 -12.77003
-12.59339 -12.45998 -12.21935 -12.06218 -11.80471 -11.65887 -11.54015 -11.11821
-10.89839 -10.38038 -9.71771 -9.54938 -9.29790 -8.80986 -6.55816 0.16292
1.26201 1.33820 1.48549 1.59720 1.72103 1.78156 2.12034 2.28166
2.46854 3.17152 3.82768 4.08120 4.14173 4.23949 4.31627 4.41787
4.44428 4.59307 4.60629 4.73316 4.75102 4.86678 4.95550 5.03861
5.08495 5.22408 5.26784 5.29015 5.34671 5.40558 5.46581 5.57197
5.95046 6.19959 6.29474 6.62965 6.83396 7.65438 7.78207
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.023595 B = 0.007708 C = 0.006319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1186.420847 B = 3631.609107 C = 4429.899274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.093 3.907
3 N -0.617 5.617
4 C 0.585 3.415
5 O -0.614 6.614
6 C -0.465 4.465
7 S 0.123 5.877
8 C -0.201 4.201
9 C -0.202 4.202
10 C 0.100 3.900
11 C -0.481 4.481
12 H 0.056 0.944
13 C 0.001 3.999
14 N -0.817 5.817
15 Si 1.106 2.894
16 H -0.242 1.242
17 H -0.248 1.248
18 H -0.279 1.279
19 C 0.124 3.876
20 C -0.148 4.148
21 C -0.146 4.146
22 H 0.096 0.904
23 H 0.051 0.949
24 H 0.062 0.938
25 H 0.113 0.887
26 H 0.081 0.919
27 H 0.187 0.813
28 H 0.128 0.872
29 H 0.278 0.722
30 H 0.055 0.945
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.035 0.965
34 H 0.035 0.965
35 H 0.083 0.917
36 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.832 -14.417 -8.886 17.364
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.031 4.031
3 N -0.350 5.350
4 C 0.383 3.617
5 O -0.501 6.501
6 C -0.583 4.583
7 S 0.384 5.616
8 C -0.334 4.334
9 C -0.235 4.235
10 C 0.088 3.912
11 C -0.513 4.513
12 H 0.074 0.926
13 C -0.215 4.215
14 N -0.439 5.439
15 Si 0.924 3.076
16 H -0.167 1.167
17 H -0.172 1.172
18 H -0.205 1.205
19 C 0.021 3.979
20 C -0.206 4.206
21 C -0.204 4.204
22 H 0.115 0.885
23 H 0.070 0.930
24 H 0.080 0.920
25 H 0.131 0.869
26 H 0.098 0.902
27 H 0.204 0.796
28 H 0.145 0.855
29 H 0.089 0.911
30 H 0.073 0.927
31 H 0.099 0.901
32 H 0.104 0.896
33 H 0.054 0.946
34 H 0.054 0.946
35 H 0.102 0.898
36 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -3.499 -15.106 -8.416 17.643
hybrid contribution -0.046 2.701 -0.461 2.741
sum -3.545 -12.405 -8.878 15.661
Atomic orbital electron populations
1.22516 0.94945 1.03977 1.02098 1.21919 0.95651 0.81923 1.03635
1.47821 1.66119 1.14497 1.06597 1.17283 0.76331 0.84652 0.83448
1.90633 1.53096 1.19497 1.86834 1.23199 1.35949 1.03409 0.95780
1.83035 1.66119 1.14903 0.97527 1.26346 1.02947 1.00245 1.03897
1.21232 1.06738 0.96593 0.98924 1.18318 0.89924 0.91952 0.90958
1.20812 1.31642 0.98553 1.00257 0.92562 1.28963 0.90559 1.01986
0.99971 1.70502 1.35556 1.01448 1.36405 0.83391 0.78169 0.72540
0.73505 1.16694 1.17248 1.20546 1.21073 0.95934 0.97283 0.83655
1.22074 0.96415 1.01233 1.00915 1.22090 0.96820 1.03153 0.98316
0.88524 0.93002 0.91956 0.86926 0.90160 0.79611 0.85505 0.91104
0.92678 0.90147 0.89560 0.94569 0.94591 0.89781 0.90148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.48 8.67 71.98 0.62 -3.86 16
2 C 0.09 2.63 4.81 86.38 0.42 3.04 16
3 N -0.62 -23.36 2.39 -802.96 -1.92 -25.28 16
4 C 0.59 29.84 7.52 86.32 0.65 30.49 16
5 O -0.61 -37.40 13.80 -4.55 -0.06 -37.47 16
6 C -0.47 -23.11 6.12 24.67 0.15 -22.96 16
7 S 0.12 4.38 15.20 -56.49 -0.86 3.53 16
8 C -0.20 -7.26 11.07 66.64 0.74 -6.52 16
9 C -0.20 -8.99 7.24 22.61 0.16 -8.82 16
10 C 0.10 5.38 5.33 -20.89 -0.11 5.27 16
11 C -0.48 -29.15 8.97 23.33 0.21 -28.94 16
12 H 0.06 3.91 6.18 -2.91 -0.02 3.89 16
13 C 0.00 0.07 5.51 85.37 0.47 0.54 16
14 N -0.82 -46.98 13.64 21.89 0.30 -46.68 16
15 Si 1.11 47.27 24.82 68.60 1.70 48.98 16
16 H -0.24 -9.04 6.87 99.48 0.68 -8.36 16
17 H -0.25 -10.23 6.19 99.48 0.62 -9.61 16
18 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16
19 C 0.12 4.00 3.23 44.99 0.15 4.14 16
20 C -0.15 -3.65 9.19 71.98 0.66 -2.99 16
21 C -0.15 -3.56 8.37 71.98 0.60 -2.96 16
22 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
23 H 0.05 1.66 5.67 -12.02 -0.07 1.59 16
24 H 0.06 1.48 6.56 -2.39 -0.02 1.47 16
25 H 0.11 2.34 6.38 -2.38 -0.02 2.32 16
26 H 0.08 2.47 4.64 -20.85 -0.10 2.37 16
27 H 0.19 4.92 8.06 -2.91 -0.02 4.89 16
28 H 0.13 5.28 4.24 -2.91 -0.01 5.26 16
29 H 0.28 16.35 8.73 -92.71 -0.81 15.54 16
30 H 0.05 2.23 6.90 -2.39 -0.02 2.22 16
31 H 0.08 1.56 6.69 -2.39 -0.02 1.54 16
32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16
33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16
35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.08 1.57 6.83 -2.38 -0.02 1.55 16
Total: -1.00 -74.15 287.63 4.68 -69.48
By element:
Atomic # 1 Polarization: 20.21 SS G_CDS: 0.80 Total: 21.01 kcal
Atomic # 6 Polarization: -38.28 SS G_CDS: 4.72 Total: -33.56 kcal
Atomic # 7 Polarization: -70.34 SS G_CDS: -1.62 Total: -71.96 kcal
Atomic # 8 Polarization: -37.40 SS G_CDS: -0.06 Total: -37.47 kcal
Atomic # 14 Polarization: 47.27 SS G_CDS: 1.70 Total: 48.98 kcal
Atomic # 16 Polarization: 4.38 SS G_CDS: -0.86 Total: 3.53 kcal
Total: -74.15 4.68 -69.48 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000875199820.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal
(2) G-P(sol) polarization free energy of solvation -74.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds