Wall clock time and date at job start Mon Mar 30 2020 00:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47175 * 2 1 4 4 C 1.34774 * 119.99589 * 80.24510 * 3 2 1 5 5 O 1.21762 * 119.99969 * 182.18347 * 4 3 2 6 6 C 1.46237 * 120.00470 * 2.18465 * 4 3 2 7 7 S 1.75675 * 125.22331 * 352.42261 * 6 4 3 8 8 C 1.75479 * 92.08787 * 179.97438 * 7 6 4 9 9 C 1.32759 * 111.36468 * 359.73892 * 8 7 6 10 10 C 1.39546 * 125.23273 * 172.40566 * 6 4 3 11 11 C 1.40538 * 123.71232 * 359.97438 * 10 6 4 12 12 H 1.08000 * 119.99768 * 24.54815 * 11 10 6 13 13 C 1.40300 * 119.99984 * 204.54726 * 11 10 6 14 14 N 1.30645 * 120.00074 * 193.03818 * 13 11 10 15 15 Si 1.86800 * 120.00156 * 13.04500 * 13 11 10 16 16 H 1.48504 * 109.46697 * 263.45473 * 15 13 11 17 17 H 1.48501 * 109.46962 * 23.44929 * 15 13 11 18 18 H 1.48500 * 109.47544 * 143.45404 * 15 13 11 19 19 C 1.46499 * 120.00355 * 260.24796 * 3 2 1 20 20 C 1.53007 * 109.46575 * 299.99884 * 19 3 2 21 21 C 1.52996 * 109.47234 * 59.99679 * 19 3 2 22 22 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46695 * 299.99285 * 1 2 3 24 24 H 1.08997 * 109.47574 * 59.99656 * 1 2 3 25 25 H 1.09008 * 109.46875 * 240.00129 * 2 1 3 26 26 H 1.09000 * 109.47349 * 120.00830 * 2 1 3 27 27 H 1.07996 * 124.31238 * 180.02562 * 8 7 6 28 28 H 1.08002 * 122.78810 * 180.23647 * 9 8 7 29 29 H 0.97000 * 119.99875 * 354.71195 * 14 13 11 30 30 H 1.08996 * 109.47550 * 180.02562 * 19 3 2 31 31 H 1.08997 * 109.47487 * 60.00315 * 20 19 3 32 32 H 1.09004 * 109.46728 * 180.02562 * 20 19 3 33 33 H 1.09001 * 109.47306 * 299.99347 * 20 19 3 34 34 H 1.08999 * 109.47638 * 60.00120 * 21 19 3 35 35 H 1.09000 * 109.47219 * 180.02562 * 21 19 3 36 36 H 1.09007 * 109.47299 * 300.00013 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0565 2.0824 1.1503 5 8 2.4248 3.2430 1.1440 6 6 1.6557 1.4494 2.4062 7 16 0.9279 -0.1429 2.5512 8 6 0.8266 -0.0081 4.2979 9 6 1.3138 1.1516 4.7225 10 6 1.7927 2.0172 3.6736 11 6 2.3432 3.2898 3.9027 12 1 2.3235 4.0353 3.1216 13 6 2.9185 3.5917 5.1463 14 7 3.1977 4.8305 5.4533 15 14 3.2852 2.2225 6.3629 16 1 2.1712 2.1163 7.3391 17 1 3.4281 0.9371 5.6331 18 1 4.5477 2.5256 7.0836 19 6 2.4652 2.0002 -1.2503 20 6 3.6309 1.1960 -1.8294 21 6 1.3094 2.0169 -2.2527 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 0.4239 -0.7730 4.9452 28 1 1.3452 1.4256 5.7667 29 1 3.0792 5.5321 4.7941 30 1 2.7910 3.0217 -1.0540 31 1 3.3056 0.1744 -2.0257 32 1 3.9637 1.6568 -2.7595 33 1 4.4544 1.1842 -1.1153 34 1 0.4788 2.5897 -1.8402 35 1 1.6420 2.4770 -3.1831 36 1 0.9840 0.9952 -2.4491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875199820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:58 Heat of formation + Delta-G solvation = -35.245411 kcal Electronic energy + Delta-G solvation = -18914.390829 eV Core-core repulsion = 16103.078570 eV Total energy + Delta-G solvation = -2811.312259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77151 -38.40791 -37.11109 -35.21181 -34.17567 -30.87572 -30.70016 -28.13664 -28.08367 -24.41485 -23.83572 -22.87575 -21.18662 -20.34972 -18.82600 -18.65879 -17.13365 -16.60908 -16.29265 -15.79927 -15.49495 -15.01894 -14.98431 -14.86904 -14.25396 -14.09965 -13.78138 -13.53418 -13.43182 -13.29217 -13.04177 -12.77003 -12.59339 -12.45998 -12.21935 -12.06218 -11.80471 -11.65887 -11.54015 -11.11821 -10.89839 -10.38038 -9.71771 -9.54938 -9.29790 -8.80986 -6.55816 0.16292 1.26201 1.33820 1.48549 1.59720 1.72103 1.78156 2.12034 2.28166 2.46854 3.17152 3.82768 4.08120 4.14173 4.23949 4.31627 4.41787 4.44428 4.59307 4.60629 4.73316 4.75102 4.86678 4.95550 5.03861 5.08495 5.22408 5.26784 5.29015 5.34671 5.40558 5.46581 5.57197 5.95046 6.19959 6.29474 6.62965 6.83396 7.65438 7.78207 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.007708 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.420847 B = 3631.609107 C = 4429.899274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.617 5.617 4 C 0.585 3.415 5 O -0.614 6.614 6 C -0.465 4.465 7 S 0.123 5.877 8 C -0.201 4.201 9 C -0.202 4.202 10 C 0.100 3.900 11 C -0.481 4.481 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.817 5.817 15 Si 1.106 2.894 16 H -0.242 1.242 17 H -0.248 1.248 18 H -0.279 1.279 19 C 0.124 3.876 20 C -0.148 4.148 21 C -0.146 4.146 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.187 0.813 28 H 0.128 0.872 29 H 0.278 0.722 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -14.417 -8.886 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.350 5.350 4 C 0.383 3.617 5 O -0.501 6.501 6 C -0.583 4.583 7 S 0.384 5.616 8 C -0.334 4.334 9 C -0.235 4.235 10 C 0.088 3.912 11 C -0.513 4.513 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.439 5.439 15 Si 0.924 3.076 16 H -0.167 1.167 17 H -0.172 1.172 18 H -0.205 1.205 19 C 0.021 3.979 20 C -0.206 4.206 21 C -0.204 4.204 22 H 0.115 0.885 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.204 0.796 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.499 -15.106 -8.416 17.643 hybrid contribution -0.046 2.701 -0.461 2.741 sum -3.545 -12.405 -8.878 15.661 Atomic orbital electron populations 1.22516 0.94945 1.03977 1.02098 1.21919 0.95651 0.81923 1.03635 1.47821 1.66119 1.14497 1.06597 1.17283 0.76331 0.84652 0.83448 1.90633 1.53096 1.19497 1.86834 1.23199 1.35949 1.03409 0.95780 1.83035 1.66119 1.14903 0.97527 1.26346 1.02947 1.00245 1.03897 1.21232 1.06738 0.96593 0.98924 1.18318 0.89924 0.91952 0.90958 1.20812 1.31642 0.98553 1.00257 0.92562 1.28963 0.90559 1.01986 0.99971 1.70502 1.35556 1.01448 1.36405 0.83391 0.78169 0.72540 0.73505 1.16694 1.17248 1.20546 1.21073 0.95934 0.97283 0.83655 1.22074 0.96415 1.01233 1.00915 1.22090 0.96820 1.03153 0.98316 0.88524 0.93002 0.91956 0.86926 0.90160 0.79611 0.85505 0.91104 0.92678 0.90147 0.89560 0.94569 0.94591 0.89781 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.48 8.67 71.98 0.62 -3.86 16 2 C 0.09 2.63 4.81 86.38 0.42 3.04 16 3 N -0.62 -23.36 2.39 -802.96 -1.92 -25.28 16 4 C 0.59 29.84 7.52 86.32 0.65 30.49 16 5 O -0.61 -37.40 13.80 -4.55 -0.06 -37.47 16 6 C -0.47 -23.11 6.12 24.67 0.15 -22.96 16 7 S 0.12 4.38 15.20 -56.49 -0.86 3.53 16 8 C -0.20 -7.26 11.07 66.64 0.74 -6.52 16 9 C -0.20 -8.99 7.24 22.61 0.16 -8.82 16 10 C 0.10 5.38 5.33 -20.89 -0.11 5.27 16 11 C -0.48 -29.15 8.97 23.33 0.21 -28.94 16 12 H 0.06 3.91 6.18 -2.91 -0.02 3.89 16 13 C 0.00 0.07 5.51 85.37 0.47 0.54 16 14 N -0.82 -46.98 13.64 21.89 0.30 -46.68 16 15 Si 1.11 47.27 24.82 68.60 1.70 48.98 16 16 H -0.24 -9.04 6.87 99.48 0.68 -8.36 16 17 H -0.25 -10.23 6.19 99.48 0.62 -9.61 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 19 C 0.12 4.00 3.23 44.99 0.15 4.14 16 20 C -0.15 -3.65 9.19 71.98 0.66 -2.99 16 21 C -0.15 -3.56 8.37 71.98 0.60 -2.96 16 22 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.05 1.66 5.67 -12.02 -0.07 1.59 16 24 H 0.06 1.48 6.56 -2.39 -0.02 1.47 16 25 H 0.11 2.34 6.38 -2.38 -0.02 2.32 16 26 H 0.08 2.47 4.64 -20.85 -0.10 2.37 16 27 H 0.19 4.92 8.06 -2.91 -0.02 4.89 16 28 H 0.13 5.28 4.24 -2.91 -0.01 5.26 16 29 H 0.28 16.35 8.73 -92.71 -0.81 15.54 16 30 H 0.05 2.23 6.90 -2.39 -0.02 2.22 16 31 H 0.08 1.56 6.69 -2.39 -0.02 1.54 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.57 6.83 -2.38 -0.02 1.55 16 Total: -1.00 -74.15 287.63 4.68 -69.48 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.80 Total: 21.01 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 4.72 Total: -33.56 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.62 Total: -71.96 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.06 Total: -37.47 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.70 Total: 48.98 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -0.86 Total: 3.53 kcal Total: -74.15 4.68 -69.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875199820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds