Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46902 * 2 1 4 4 C 1.37098 * 119.99706 * 264.74329 * 3 2 1 5 5 H 1.08006 * 119.99809 * 146.16726 * 4 3 2 6 6 C 1.38950 * 120.00382 * 326.17659 * 4 3 2 7 7 N 1.31412 * 119.99897 * 337.66102 * 6 4 3 8 8 Si 1.86793 * 120.00266 * 157.66854 * 6 4 3 9 9 H 1.48502 * 109.47474 * 59.99831 * 8 6 4 10 10 H 1.48499 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99620 * 8 6 4 12 12 C 1.34780 * 120.00381 * 84.75109 * 3 2 1 13 13 O 1.21289 * 120.00140 * 179.97438 * 12 3 2 14 14 C 1.50692 * 119.99729 * 359.97438 * 12 3 2 15 15 C 1.50699 * 109.47314 * 180.02562 * 14 12 3 16 16 S 1.75884 * 125.20288 * 270.14066 * 15 14 12 17 17 C 1.75882 * 90.97126 * 180.17465 * 16 15 14 18 18 C 1.50703 * 125.20441 * 179.86216 * 17 16 15 19 19 C 1.33386 * 109.59454 * 359.83052 * 17 16 15 20 20 C 1.33389 * 125.20447 * 89.99253 * 15 14 12 21 21 C 1.50697 * 122.53893 * 0.03405 * 20 15 14 22 22 H 1.08995 * 109.47779 * 300.00590 * 1 2 3 23 23 H 1.09002 * 109.47113 * 60.00700 * 1 2 3 24 24 H 1.09005 * 109.46987 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47310 * 239.99158 * 2 1 3 26 26 H 1.09001 * 109.46655 * 119.99571 * 2 1 3 27 27 H 0.97000 * 120.00213 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47667 * 60.00206 * 14 12 3 29 29 H 1.09005 * 109.47523 * 300.00127 * 14 12 3 30 30 H 1.09005 * 109.46929 * 269.96527 * 18 17 16 31 31 H 1.09002 * 109.46970 * 29.96062 * 18 17 16 32 32 H 1.08994 * 109.46951 * 149.96137 * 18 17 16 33 33 H 1.08003 * 122.53979 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.47297 * 269.72724 * 21 20 15 35 35 H 1.09008 * 109.47288 * 149.73244 * 21 20 15 36 36 H 1.08994 * 109.47190 * 29.73340 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9005 1.2465 -2.2179 7 7 3.5053 0.1088 -1.9594 8 14 2.7821 1.8627 -3.9773 9 1 3.4553 3.1818 -4.0863 10 1 3.4438 0.8932 -4.8869 11 1 1.3534 2.0031 -4.3575 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7780 1.3819 2.4618 15 6 2.0051 2.3402 3.6024 16 16 3.5083 2.5105 4.4996 17 6 2.7961 3.7582 5.5143 18 6 3.5044 4.4769 6.6337 19 6 1.5334 3.9716 5.1412 20 6 1.0978 3.1911 4.0841 21 6 -0.2978 3.2906 3.5243 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.8898 -0.4112 -2.6824 28 1 2.3993 0.4972 2.6010 29 1 0.7284 1.0885 2.4377 30 1 3.3580 3.9312 7.5659 31 1 4.5698 4.5359 6.4108 32 1 3.0979 5.4832 6.7340 33 1 0.8991 4.6985 5.6266 34 1 -0.3174 4.0338 2.7272 35 1 -0.9863 3.5880 4.3153 36 1 -0.5992 2.3220 3.1255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888556255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = -10.515100 kcal Electronic energy + Delta-G solvation = -18330.115541 eV Core-core repulsion = 15519.875669 eV Total energy + Delta-G solvation = -2810.239872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.90129 -37.74334 -34.95851 -33.03905 -32.00000 -29.80285 -29.42505 -28.02295 -25.47876 -23.85239 -22.20476 -21.31697 -19.23948 -17.68037 -16.78139 -16.63429 -15.92775 -14.95631 -14.61820 -14.14705 -14.02484 -13.80560 -13.08055 -13.03165 -12.90759 -12.80072 -12.54087 -12.23428 -11.91474 -11.74282 -11.50069 -11.28929 -11.16709 -11.01899 -10.93841 -10.87282 -10.36045 -10.34857 -10.20547 -10.07015 -8.92056 -8.45646 -8.01734 -7.80759 -7.46677 -6.31295 -3.91815 1.38543 2.01406 2.41789 3.06400 3.20324 3.26310 3.30402 3.94138 4.18188 4.89806 5.01024 5.04873 5.26173 5.37362 5.52953 5.55937 5.67609 5.75750 5.78294 5.81994 5.93048 5.94787 6.00976 6.12758 6.23101 6.28545 6.37549 6.47715 6.53460 6.82400 6.89014 6.97159 7.27542 7.61463 8.26477 8.54092 9.21890 9.44127 10.04952 10.72491 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.005267 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.520087 B = 5314.622793 C = 5576.501921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.441 5.441 4 C -0.305 4.305 5 H 0.091 0.909 6 C 0.035 3.965 7 N -0.871 5.871 8 Si 0.917 3.083 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.461 3.539 13 O -0.570 6.570 14 C -0.071 4.071 15 C -0.131 4.131 16 S 0.099 5.901 17 C -0.197 4.197 18 C -0.076 4.076 19 C -0.128 4.128 20 C -0.110 4.110 21 C -0.089 4.089 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.046 0.954 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 0.471 12.071 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.161 5.161 4 C -0.433 4.433 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.248 3.752 13 O -0.453 6.453 14 C -0.113 4.113 15 C -0.249 4.249 16 S 0.365 5.635 17 C -0.314 4.314 18 C -0.134 4.134 19 C -0.159 4.159 20 C -0.121 4.121 21 C -0.148 4.148 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.154 0.189 11.877 12.290 hybrid contribution -1.343 0.729 -0.887 1.767 sum -4.497 0.918 10.991 11.911 Atomic orbital electron populations 1.22216 0.98252 1.00345 1.01462 1.21608 0.91717 0.85598 1.04137 1.43507 1.56028 1.11827 1.04761 1.19410 1.39697 0.95441 0.88746 0.89119 1.25311 0.94548 0.96542 1.00470 1.69915 1.32694 1.15339 1.32951 0.86145 0.78601 0.78751 0.82117 1.19785 1.20996 1.19935 1.20076 0.82753 0.88077 0.84255 1.90542 1.49699 1.18501 1.86560 1.20278 1.03156 0.96674 0.91162 1.23703 0.95735 1.03764 1.01697 1.84083 1.15360 1.36550 1.27516 1.24286 0.98309 1.04792 1.04035 1.20245 0.99543 0.99171 0.94469 1.19796 0.95267 1.02073 0.98777 1.18627 0.97820 0.97582 0.98085 1.20449 0.91512 1.02426 1.00371 0.94002 0.92392 0.93061 0.86812 0.93524 0.92217 0.89399 0.88558 0.91293 0.91615 0.91006 0.85064 0.91197 0.92225 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.15 37.16 0.38 -2.54 16 2 C 0.09 2.02 5.43 -4.04 -0.02 2.00 16 3 N -0.44 -11.21 2.56 -114.82 -0.29 -11.50 16 4 C -0.31 -8.51 8.98 -14.93 -0.13 -8.64 16 5 H 0.09 2.66 7.70 -52.48 -0.40 2.26 16 6 C 0.03 0.93 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.44 11.33 55.50 0.63 -22.82 16 8 Si 0.92 20.68 29.61 -169.99 -5.03 15.65 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 C 0.46 11.41 7.59 -10.99 -0.08 11.33 16 13 O -0.57 -16.25 15.86 5.55 0.09 -16.16 16 14 C -0.07 -1.37 4.47 -29.04 -0.13 -1.50 16 15 C -0.13 -2.46 5.00 -36.00 -0.18 -2.64 16 16 S 0.10 1.70 23.31 -107.50 -2.51 -0.80 16 17 C -0.20 -2.96 6.51 -36.00 -0.23 -3.20 16 18 C -0.08 -0.84 10.38 36.01 0.37 -0.46 16 19 C -0.13 -1.97 9.85 -41.21 -0.41 -2.38 16 20 C -0.11 -1.88 5.80 -106.25 -0.62 -2.50 16 21 C -0.09 -1.31 9.87 36.00 0.36 -0.96 16 22 H 0.04 0.68 6.59 -51.93 -0.34 0.34 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 26 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 28 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 29 H 0.10 1.64 5.03 -51.93 -0.26 1.37 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 36 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -31.61 311.61 -8.08 -39.69 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.87 Total: 1.90 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.79 Total: -10.65 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.34 Total: -34.32 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.51 Total: -0.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.61 -8.08 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.174 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds