Wall clock time and date at job start Mon Mar 30 2020 00:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46902 * 2 1 4 4 C 1.37098 * 119.99706 * 264.74329 * 3 2 1 5 5 H 1.08006 * 119.99809 * 146.16726 * 4 3 2 6 6 C 1.38950 * 120.00382 * 326.17659 * 4 3 2 7 7 N 1.31412 * 119.99897 * 337.66102 * 6 4 3 8 8 Si 1.86793 * 120.00266 * 157.66854 * 6 4 3 9 9 H 1.48502 * 109.47474 * 59.99831 * 8 6 4 10 10 H 1.48499 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99620 * 8 6 4 12 12 C 1.34780 * 120.00381 * 84.75109 * 3 2 1 13 13 O 1.21289 * 120.00140 * 179.97438 * 12 3 2 14 14 C 1.50692 * 119.99729 * 359.97438 * 12 3 2 15 15 C 1.50699 * 109.47314 * 180.02562 * 14 12 3 16 16 S 1.75884 * 125.20288 * 270.14066 * 15 14 12 17 17 C 1.75882 * 90.97126 * 180.17465 * 16 15 14 18 18 C 1.50703 * 125.20441 * 179.86216 * 17 16 15 19 19 C 1.33386 * 109.59454 * 359.83052 * 17 16 15 20 20 C 1.33389 * 125.20447 * 89.99253 * 15 14 12 21 21 C 1.50697 * 122.53893 * 0.03405 * 20 15 14 22 22 H 1.08995 * 109.47779 * 300.00590 * 1 2 3 23 23 H 1.09002 * 109.47113 * 60.00700 * 1 2 3 24 24 H 1.09005 * 109.46987 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47310 * 239.99158 * 2 1 3 26 26 H 1.09001 * 109.46655 * 119.99571 * 2 1 3 27 27 H 0.97000 * 120.00213 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47667 * 60.00206 * 14 12 3 29 29 H 1.09005 * 109.47523 * 300.00127 * 14 12 3 30 30 H 1.09005 * 109.46929 * 269.96527 * 18 17 16 31 31 H 1.09002 * 109.46970 * 29.96062 * 18 17 16 32 32 H 1.08994 * 109.46951 * 149.96137 * 18 17 16 33 33 H 1.08003 * 122.53979 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.47297 * 269.72724 * 21 20 15 35 35 H 1.09008 * 109.47288 * 149.73244 * 21 20 15 36 36 H 1.08994 * 109.47190 * 29.73340 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9005 1.2465 -2.2179 7 7 3.5053 0.1088 -1.9594 8 14 2.7821 1.8627 -3.9773 9 1 3.4553 3.1818 -4.0863 10 1 3.4438 0.8932 -4.8869 11 1 1.3534 2.0031 -4.3575 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7780 1.3819 2.4618 15 6 2.0051 2.3402 3.6024 16 16 3.5083 2.5105 4.4996 17 6 2.7961 3.7582 5.5143 18 6 3.5044 4.4769 6.6337 19 6 1.5334 3.9716 5.1412 20 6 1.0978 3.1911 4.0841 21 6 -0.2978 3.2906 3.5243 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.8898 -0.4112 -2.6824 28 1 2.3993 0.4972 2.6010 29 1 0.7284 1.0885 2.4377 30 1 3.3580 3.9312 7.5659 31 1 4.5698 4.5359 6.4108 32 1 3.0979 5.4832 6.7340 33 1 0.8991 4.6985 5.6266 34 1 -0.3174 4.0338 2.7272 35 1 -0.9863 3.5880 4.3153 36 1 -0.5992 2.3220 3.1255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:29 Heat of formation + Delta-G solvation = -28.318976 kcal Electronic energy + Delta-G solvation = -18330.887575 eV Core-core repulsion = 15519.875669 eV Total energy + Delta-G solvation = -2811.011906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63057 -39.14586 -36.88302 -34.42422 -33.82699 -31.29786 -31.07262 -29.10976 -27.25244 -25.40259 -23.87438 -22.48610 -21.00987 -19.01991 -18.74294 -17.99427 -17.74592 -16.86356 -16.09224 -15.82057 -15.55573 -15.06040 -14.60538 -14.45393 -14.24308 -13.96446 -13.91204 -13.63310 -13.48285 -13.41402 -12.93399 -12.85142 -12.67390 -12.50031 -12.32387 -12.27876 -12.11500 -12.04745 -11.78597 -11.53727 -10.88618 -10.38566 -9.46330 -9.31902 -9.12410 -8.33777 -6.02948 0.11155 0.76124 1.15175 1.38326 1.40939 1.51159 1.81789 2.05813 2.30777 3.01816 3.14662 3.82154 3.95801 4.14379 4.20963 4.29916 4.39419 4.48171 4.60299 4.63584 4.65431 4.76016 4.78228 4.84962 4.88878 5.03407 5.05657 5.16990 5.30131 5.32987 5.46375 5.58697 5.59491 5.74520 6.20893 6.55284 7.19738 7.49008 8.09614 8.68089 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.005267 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.520087 B = 5314.622793 C = 5576.501921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.453 5.453 4 C -0.341 4.341 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.888 5.888 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.264 1.264 12 C 0.450 3.550 13 O -0.620 6.620 14 C -0.054 4.054 15 C -0.171 4.171 16 S 0.058 5.942 17 C -0.180 4.180 18 C -0.077 4.077 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.089 4.089 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.274 0.726 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 0.323 13.232 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 N -0.173 5.173 4 C -0.469 4.469 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.526 5.526 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.188 1.188 12 C 0.239 3.761 13 O -0.506 6.506 14 C -0.096 4.096 15 C -0.289 4.289 16 S 0.323 5.677 17 C -0.297 4.297 18 C -0.135 4.135 19 C -0.174 4.174 20 C -0.120 4.120 21 C -0.148 4.148 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.180 0.820 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.409 -0.003 13.041 13.767 hybrid contribution -0.918 0.812 -1.181 1.702 sum -5.327 0.808 11.861 13.027 Atomic orbital electron populations 1.22104 0.95117 1.02576 1.01356 1.21730 0.94290 0.83477 1.03762 1.43793 1.55962 1.13068 1.04441 1.19335 1.41866 0.94774 0.90883 0.92058 1.26032 0.93513 0.96600 1.03708 1.69984 1.32435 1.15964 1.34242 0.85216 0.79033 0.77965 0.77460 1.20522 1.19526 1.18827 1.20952 0.81712 0.87636 0.85781 1.90488 1.51809 1.20747 1.87542 1.20092 1.04543 0.96518 0.88398 1.23735 0.96689 1.05649 1.02794 1.84133 1.16134 1.38582 1.28834 1.24820 0.98151 1.03057 1.03714 1.20421 0.99360 0.99985 0.93765 1.20137 0.95909 1.02671 0.98676 1.19093 0.98461 0.96500 0.97898 1.20514 0.91106 1.02286 1.00870 0.92555 0.94033 0.89578 0.89141 0.91806 0.91650 0.88675 0.86186 0.89025 0.91359 0.88993 0.81975 0.92907 0.88934 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 10.15 71.98 0.73 -4.48 16 2 C 0.09 3.89 5.43 86.38 0.47 4.36 16 3 N -0.45 -23.57 2.56 -635.56 -1.63 -25.20 16 4 C -0.34 -19.66 8.98 84.04 0.75 -18.90 16 5 H 0.06 3.81 7.70 -2.91 -0.02 3.79 16 6 C 0.00 0.20 4.92 84.93 0.42 0.62 16 7 N -0.89 -48.22 11.33 21.66 0.25 -47.98 16 8 Si 0.98 42.77 29.61 68.60 2.03 44.80 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 C 0.45 22.86 7.59 87.65 0.66 23.52 16 13 O -0.62 -36.82 15.86 -3.06 -0.05 -36.87 16 14 C -0.05 -2.09 4.47 29.10 0.13 -1.96 16 15 C -0.17 -6.39 5.00 24.59 0.12 -6.27 16 16 S 0.06 1.99 23.31 -56.49 -1.32 0.67 16 17 C -0.18 -5.09 6.51 24.59 0.16 -4.93 16 18 C -0.08 -1.47 10.38 71.24 0.74 -0.74 16 19 C -0.14 -4.11 9.85 21.22 0.21 -3.90 16 20 C -0.11 -3.56 5.80 -20.92 -0.12 -3.68 16 21 C -0.09 -2.49 9.87 71.23 0.70 -1.78 16 22 H 0.06 1.73 6.59 -2.39 -0.02 1.72 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 2.31 8.14 -2.38 -0.02 2.30 16 25 H 0.09 4.35 5.34 -2.39 -0.01 4.33 16 26 H 0.06 2.46 6.66 -2.39 -0.02 2.45 16 27 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.10 3.46 7.41 -2.39 -0.02 3.44 16 29 H 0.12 3.92 5.03 -2.38 -0.01 3.91 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.93 8.13 -2.38 -0.02 1.91 16 36 H 0.07 1.80 6.59 -2.39 -0.02 1.78 16 Total: -1.00 -71.06 311.61 5.34 -65.71 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.08 Total: 16.99 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 4.98 Total: -18.13 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.38 Total: -73.18 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.05 Total: -36.87 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -71.06 5.34 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.393 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds