Wall clock time and date at job start Mon Mar 30 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00359 * 2 1 4 4 O 1.21310 * 120.00448 * 174.66924 * 3 2 1 5 5 C 1.50707 * 120.00017 * 354.94999 * 3 2 1 6 6 C 1.52999 * 109.47227 * 179.72104 * 5 3 2 7 7 C 1.53004 * 109.46940 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46940 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47044 * 179.97438 * 8 7 6 10 10 H 1.08009 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00179 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00196 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00043 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47129 * 89.99577 * 13 11 9 15 15 H 1.48492 * 109.47270 * 210.00218 * 13 11 9 16 16 H 1.48500 * 109.46831 * 330.00132 * 13 11 9 17 17 C 1.40721 * 119.99752 * 180.02562 * 2 1 3 18 18 C 1.38802 * 122.62259 * 5.71708 * 17 2 1 19 19 C 1.33369 * 114.88772 * 180.02562 * 18 17 2 20 20 S 1.75851 * 109.71334 * 0.02562 * 19 18 17 21 21 C 1.33819 * 122.61990 * 185.43436 * 17 2 1 22 22 H 1.08998 * 109.46899 * 89.99375 * 1 2 3 23 23 H 1.08998 * 109.47381 * 209.99956 * 1 2 3 24 24 H 1.09005 * 109.46853 * 329.99885 * 1 2 3 25 25 H 1.08997 * 109.46627 * 299.72319 * 5 3 2 26 26 H 1.09000 * 109.46654 * 59.72105 * 5 3 2 27 27 H 1.08997 * 109.47064 * 300.00007 * 6 5 3 28 28 H 1.09001 * 109.46870 * 60.00083 * 6 5 3 29 29 H 1.08997 * 109.46870 * 300.00188 * 7 6 5 30 30 H 1.09000 * 109.46698 * 60.00150 * 7 6 5 31 31 H 1.08997 * 109.47064 * 300.00129 * 8 7 6 32 32 H 1.09001 * 109.46870 * 60.00206 * 8 7 6 33 33 H 0.96996 * 119.99868 * 180.02562 * 12 11 9 34 34 H 1.07998 * 122.55660 * 0.03287 * 18 17 2 35 35 H 1.08005 * 125.14052 * 180.02562 * 19 18 17 36 36 H 1.07999 * 125.20389 * 359.97438 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3481 1.1694 0.0976 5 6 1.3899 2.4698 -0.1149 6 6 2.3827 3.6335 -0.0833 7 6 1.6222 4.9560 -0.2006 8 6 2.6149 6.1197 -0.1683 9 6 1.8660 7.4222 -0.2845 10 1 0.7895 7.4202 -0.3721 11 6 2.5548 8.6165 -0.2778 12 7 1.9012 9.7533 -0.3787 13 14 4.4167 8.6201 -0.1256 14 1 5.0241 8.5629 -1.4794 15 1 4.8548 9.8614 0.5615 16 1 4.8511 7.4386 0.6621 17 6 2.1686 -1.2187 -0.0005 18 6 1.5353 -2.4483 -0.1176 19 6 2.3506 -3.5035 -0.0996 20 16 4.0154 -2.9640 0.0733 21 6 3.5010 -1.2825 0.1062 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 0.8369 2.4892 -1.0540 26 1 0.6938 2.5633 0.7187 27 1 2.9356 3.6139 0.8558 28 1 3.0788 3.5399 -0.9168 29 1 1.0696 4.9752 -1.1399 30 1 0.9258 5.0497 0.6327 31 1 3.1672 6.1002 0.7712 32 1 3.3116 6.0261 -1.0014 33 1 2.3859 10.5934 -0.3744 34 1 0.4640 -2.5432 -0.2158 35 1 2.0360 -4.5337 -0.1792 36 1 4.1594 -0.4317 0.2009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892554758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:07 Heat of formation + Delta-G solvation = -6.261794 kcal Electronic energy + Delta-G solvation = -17327.269838 eV Core-core repulsion = 14517.214403 eV Total energy + Delta-G solvation = -2810.055435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79938 -37.87529 -35.16598 -34.96350 -32.60281 -30.51537 -29.48393 -26.95123 -26.04525 -24.38632 -22.16133 -20.16028 -20.03138 -18.90417 -18.19365 -16.93544 -16.53629 -16.33979 -15.84084 -14.78940 -14.56758 -14.15023 -13.68480 -13.47496 -13.21306 -13.12359 -12.93945 -12.62703 -12.45375 -12.40361 -12.08025 -11.75682 -11.15796 -11.12431 -10.76280 -10.57069 -10.26719 -9.89918 -9.75317 -9.65956 -9.42534 -9.13368 -8.93789 -8.50155 -7.97982 -6.01356 -3.98989 0.83630 1.46604 1.76664 2.10818 2.78190 2.86970 3.34890 3.42006 3.47731 4.35049 4.49400 4.64720 4.76793 4.92578 5.00984 5.11319 5.22274 5.29702 5.33614 5.45728 5.57967 5.69772 5.78134 5.95248 5.97629 6.09360 6.36732 6.57809 6.64207 6.77528 6.96181 7.08631 7.36218 7.49106 7.83664 7.94850 8.57198 9.03449 9.61998 11.12143 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.041017 B = 0.003139 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.484104 B = 8917.853392 C = 9559.134770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.550 5.550 3 C 0.512 3.488 4 O -0.515 6.515 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.102 4.102 8 C -0.015 4.015 9 C -0.520 4.520 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.120 3.880 18 C -0.150 4.150 19 C -0.203 4.203 20 S 0.096 5.904 21 C -0.242 4.242 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -27.837 0.851 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.275 5.275 3 C 0.303 3.697 4 O -0.390 6.390 5 C -0.173 4.173 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.558 4.558 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.189 1.189 17 C 0.017 3.983 18 C -0.183 4.183 19 C -0.339 4.339 20 S 0.357 5.643 21 C -0.380 4.380 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.764 -28.293 0.990 28.321 hybrid contribution -0.645 0.747 -0.078 0.990 sum -1.408 -27.546 0.912 27.597 Atomic orbital electron populations 1.22014 0.77934 1.04266 1.02953 1.45532 1.07396 1.03706 1.70891 1.21322 0.88100 0.85148 0.75158 1.90481 1.14640 1.86196 1.47718 1.21832 1.00111 0.91060 1.04337 1.21525 0.97171 0.92855 1.03020 1.21473 0.98696 0.92861 1.00940 1.19573 0.95270 0.94048 0.96381 1.21178 0.95403 0.89122 1.50078 0.91101 1.25042 0.98396 0.95556 0.94604 1.69920 1.35852 0.97512 1.51235 0.86773 0.86260 0.77583 0.78683 1.20307 1.21448 1.18904 1.16926 0.90904 0.85975 1.04519 1.19828 1.01273 0.90318 1.06894 1.25391 0.96358 1.02684 1.09425 1.84324 1.07503 0.99917 1.72590 1.26535 0.98619 1.00226 1.12632 0.91509 0.90374 0.89591 0.88551 0.88603 0.91648 0.91657 0.92793 0.92782 0.96602 0.97044 0.92801 0.83905 0.81588 0.78146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 9.70 59.85 0.58 1.06 16 2 N -0.55 -6.13 3.12 -122.02 -0.38 -6.51 16 3 C 0.51 6.96 7.63 -10.98 -0.08 6.88 16 4 O -0.51 -8.68 12.76 5.53 0.07 -8.60 16 5 C -0.13 -1.63 4.38 -27.88 -0.12 -1.76 16 6 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 7 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 8 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 9 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 10 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 11 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 12 N -0.91 -28.33 13.96 55.43 0.77 -27.55 16 13 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 17 C 0.12 1.42 6.41 -85.12 -0.55 0.87 16 18 C -0.15 -1.35 9.27 -41.07 -0.38 -1.73 16 19 C -0.20 -1.67 11.22 29.03 0.33 -1.35 16 20 S 0.10 0.95 23.33 -107.50 -2.51 -1.56 16 21 C -0.24 -3.11 10.05 29.18 0.29 -2.81 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.40 6.72 -51.93 -0.35 0.05 16 24 H 0.09 0.49 6.47 -51.93 -0.34 0.15 16 25 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.10 0.98 7.23 -51.93 -0.38 0.60 16 27 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 28 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.14 0.91 6.84 -52.49 -0.36 0.56 16 35 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 36 H 0.20 3.01 5.28 -52.54 -0.28 2.74 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -33.77 309.30 -7.79 -41.56 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.00 Total: -2.78 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.73 Total: -16.84 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.39 Total: -34.06 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.77 -7.79 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892554758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.301 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds