Wall clock time and date at job start Mon Mar 30 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00359 * 2 1 4 4 O 1.21310 * 120.00448 * 174.66924 * 3 2 1 5 5 C 1.50707 * 120.00017 * 354.94999 * 3 2 1 6 6 C 1.52999 * 109.47227 * 179.72104 * 5 3 2 7 7 C 1.53004 * 109.46940 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46940 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47044 * 179.97438 * 8 7 6 10 10 H 1.08009 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00179 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00196 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00043 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47129 * 89.99577 * 13 11 9 15 15 H 1.48492 * 109.47270 * 210.00218 * 13 11 9 16 16 H 1.48500 * 109.46831 * 330.00132 * 13 11 9 17 17 C 1.40721 * 119.99752 * 180.02562 * 2 1 3 18 18 C 1.38802 * 122.62259 * 5.71708 * 17 2 1 19 19 C 1.33369 * 114.88772 * 180.02562 * 18 17 2 20 20 S 1.75851 * 109.71334 * 0.02562 * 19 18 17 21 21 C 1.33819 * 122.61990 * 185.43436 * 17 2 1 22 22 H 1.08998 * 109.46899 * 89.99375 * 1 2 3 23 23 H 1.08998 * 109.47381 * 209.99956 * 1 2 3 24 24 H 1.09005 * 109.46853 * 329.99885 * 1 2 3 25 25 H 1.08997 * 109.46627 * 299.72319 * 5 3 2 26 26 H 1.09000 * 109.46654 * 59.72105 * 5 3 2 27 27 H 1.08997 * 109.47064 * 300.00007 * 6 5 3 28 28 H 1.09001 * 109.46870 * 60.00083 * 6 5 3 29 29 H 1.08997 * 109.46870 * 300.00188 * 7 6 5 30 30 H 1.09000 * 109.46698 * 60.00150 * 7 6 5 31 31 H 1.08997 * 109.47064 * 300.00129 * 8 7 6 32 32 H 1.09001 * 109.46870 * 60.00206 * 8 7 6 33 33 H 0.96996 * 119.99868 * 180.02562 * 12 11 9 34 34 H 1.07998 * 122.55660 * 0.03287 * 18 17 2 35 35 H 1.08005 * 125.14052 * 180.02562 * 19 18 17 36 36 H 1.07999 * 125.20389 * 359.97438 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3481 1.1694 0.0976 5 6 1.3899 2.4698 -0.1149 6 6 2.3827 3.6335 -0.0833 7 6 1.6222 4.9560 -0.2006 8 6 2.6149 6.1197 -0.1683 9 6 1.8660 7.4222 -0.2845 10 1 0.7895 7.4202 -0.3721 11 6 2.5548 8.6165 -0.2778 12 7 1.9012 9.7533 -0.3787 13 14 4.4167 8.6201 -0.1256 14 1 5.0241 8.5629 -1.4794 15 1 4.8548 9.8614 0.5615 16 1 4.8511 7.4386 0.6621 17 6 2.1686 -1.2187 -0.0005 18 6 1.5353 -2.4483 -0.1176 19 6 2.3506 -3.5035 -0.0996 20 16 4.0154 -2.9640 0.0733 21 6 3.5010 -1.2825 0.1062 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 0.8369 2.4892 -1.0540 26 1 0.6938 2.5633 0.7187 27 1 2.9356 3.6139 0.8558 28 1 3.0788 3.5399 -0.9168 29 1 1.0696 4.9752 -1.1399 30 1 0.9258 5.0497 0.6327 31 1 3.1672 6.1002 0.7712 32 1 3.3116 6.0261 -1.0014 33 1 2.3859 10.5934 -0.3744 34 1 0.4640 -2.5432 -0.2158 35 1 2.0360 -4.5337 -0.1792 36 1 4.1594 -0.4317 0.2009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892554758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:07 Heat of formation + Delta-G solvation = -27.051760 kcal Electronic energy + Delta-G solvation = -17328.171358 eV Core-core repulsion = 14517.214403 eV Total energy + Delta-G solvation = -2810.956956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70832 -38.76693 -36.68866 -35.84756 -34.59740 -32.02446 -30.40985 -28.09543 -27.15414 -25.42102 -23.64288 -21.78732 -21.02149 -19.79057 -18.94791 -18.85488 -17.68412 -17.30036 -16.71652 -16.32248 -16.02404 -15.37928 -14.79779 -14.59506 -14.47279 -14.06258 -13.80719 -13.72410 -13.70894 -13.61702 -13.25882 -13.10921 -12.86798 -12.31827 -12.10874 -11.85350 -11.75965 -11.47083 -11.35198 -11.25801 -11.02910 -10.76311 -10.61099 -9.68976 -8.78686 -8.30025 -6.32911 0.06935 0.70668 1.04075 1.21884 1.34330 1.35850 1.48442 1.95072 2.03706 2.35427 3.05545 3.47301 3.95484 4.03000 4.08853 4.20975 4.31780 4.52642 4.56701 4.67156 4.71364 4.76016 4.80026 4.86921 4.91748 5.06217 5.11916 5.17780 5.21216 5.26870 5.59345 5.65171 5.68320 5.75065 6.24849 6.29454 6.75228 6.99807 7.32042 8.86561 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.041017 B = 0.003139 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.484104 B = 8917.853392 C = 9559.134770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.547 5.547 3 C 0.504 3.496 4 O -0.559 6.559 5 C -0.124 4.124 6 C -0.099 4.099 7 C -0.093 4.093 8 C -0.017 4.017 9 C -0.530 4.530 10 H 0.039 0.961 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.946 3.054 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.253 1.253 17 C 0.114 3.886 18 C -0.157 4.157 19 C -0.185 4.185 20 S 0.097 5.903 21 C -0.285 4.285 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.202 0.798 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -30.389 0.821 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.271 5.271 3 C 0.296 3.704 4 O -0.438 6.438 5 C -0.163 4.163 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.055 4.055 9 C -0.568 4.568 10 H 0.057 0.943 11 C -0.192 4.192 12 N -0.592 5.592 13 Si 0.770 3.230 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.177 1.177 17 C 0.009 3.991 18 C -0.189 4.189 19 C -0.321 4.321 20 S 0.358 5.642 21 C -0.423 4.423 22 H 0.102 0.898 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.219 0.781 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.675 -30.879 0.958 30.939 hybrid contribution -0.469 1.498 -0.077 1.572 sum -2.144 -29.380 0.881 29.471 Atomic orbital electron populations 1.22393 0.75101 1.06041 1.04627 1.45646 1.09103 1.02868 1.69475 1.21542 0.87684 0.86287 0.74934 1.90496 1.16511 1.86979 1.49833 1.21733 0.99154 0.88677 1.06726 1.21308 0.97512 0.93041 1.01809 1.21326 0.97774 0.92423 1.01493 1.19577 0.96012 0.93833 0.96059 1.21548 0.94419 0.91398 1.49400 0.94314 1.25977 1.03739 0.95148 0.94377 1.70056 1.38037 0.98332 1.52729 0.85711 0.79894 0.78132 0.79256 1.19274 1.20753 1.17655 1.17340 0.90811 0.87195 1.03754 1.20072 1.02891 0.88963 1.06942 1.25863 0.94781 1.04227 1.07215 1.84242 1.09241 0.98078 1.72687 1.26377 0.99341 1.01150 1.15460 0.89818 0.88314 0.88286 0.86188 0.85965 0.92926 0.92971 0.92269 0.92208 0.96839 0.96995 0.92516 0.80726 0.78119 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 9.70 127.77 1.24 1.82 16 2 N -0.55 -11.19 3.12 -658.34 -2.05 -13.24 16 3 C 0.50 13.33 7.63 87.66 0.67 14.00 16 4 O -0.56 -19.48 12.76 -3.12 -0.04 -19.52 16 5 C -0.12 -2.77 4.38 29.85 0.13 -2.64 16 6 C -0.10 -3.14 4.50 30.60 0.14 -3.00 16 7 C -0.09 -3.48 5.15 30.60 0.16 -3.32 16 8 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 9 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 10 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 11 C 0.00 0.25 5.47 84.65 0.46 0.72 16 12 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 13 Si 0.95 46.02 27.47 68.60 1.88 47.90 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 17 C 0.11 2.53 6.41 36.84 0.24 2.77 16 18 C -0.16 -2.33 9.27 21.30 0.20 -2.13 16 19 C -0.19 -2.48 11.22 66.72 0.75 -1.73 16 20 S 0.10 1.83 23.33 -56.49 -1.32 0.52 16 21 C -0.28 -7.48 10.05 66.81 0.67 -6.81 16 22 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.10 0.58 6.72 -2.39 -0.02 0.57 16 24 H 0.10 0.73 6.47 -2.38 -0.02 0.72 16 25 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.12 2.11 7.23 -2.39 -0.02 2.09 16 27 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.01 0.56 7.57 -2.39 -0.02 0.55 16 33 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 34 H 0.18 1.40 6.84 -2.91 -0.02 1.38 16 35 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.17 5.57 5.28 -3.68 -0.02 5.56 16 Total: -1.00 -76.07 309.30 4.80 -71.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.01 Total: 5.13 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 5.02 Total: -31.86 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.75 Total: -73.43 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.52 kcal Total: -76.07 4.80 -71.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892554758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.220 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds