Wall clock time and date at job start Mon Mar 30 2020 01:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 117.00181 * 2 1 4 4 O 1.21468 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.47740 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.13462 * 359.97438 * 5 3 2 7 7 C 1.37930 * 119.89716 * 180.02562 * 6 5 3 8 8 C 1.38352 * 120.17586 * 359.72666 * 7 6 5 9 9 C 1.50699 * 119.85814 * 180.27641 * 8 7 6 10 10 N 1.46899 * 109.47249 * 260.27445 * 9 8 7 11 11 C 1.46900 * 111.00113 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47246 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99666 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00214 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99976 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99804 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46877 * 60.00113 * 16 14 12 18 18 H 1.48502 * 109.46674 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47260 * 299.99931 * 16 14 12 20 20 C 1.38559 * 120.28139 * 0.54742 * 8 7 6 21 21 F 1.35104 * 119.95081 * 179.72260 * 20 8 7 22 22 C 1.38198 * 120.09645 * 359.45504 * 20 8 7 23 23 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46762 * 300.00389 * 1 2 3 25 25 H 1.09002 * 109.47008 * 59.99401 * 1 2 3 26 26 H 1.07996 * 120.04941 * 0.04185 * 6 5 3 27 27 H 1.07997 * 119.91112 * 180.02562 * 7 6 5 28 28 H 1.09004 * 109.47176 * 20.27641 * 9 8 7 29 29 H 1.09003 * 109.47484 * 140.27342 * 9 8 7 30 30 H 1.00902 * 111.00008 * 303.95490 * 10 9 8 31 31 H 1.08995 * 109.47628 * 300.00058 * 11 10 9 32 32 H 1.08999 * 109.46896 * 60.00444 * 11 10 9 33 33 H 0.96999 * 119.99907 * 179.97438 * 15 14 12 34 34 H 1.07991 * 120.08934 * 180.25118 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3023 0.1080 -0.0006 7 6 5.6794 0.1859 -0.0006 8 6 6.3062 1.4193 -0.0063 9 6 7.8112 1.4960 -0.0125 10 7 8.2939 1.7581 1.3499 11 6 9.7603 1.8389 1.3825 12 6 10.2173 2.1087 2.7930 13 1 9.4909 2.2096 3.5860 14 6 11.5625 2.2268 3.0711 15 7 12.4469 2.1035 2.1057 16 14 12.1289 2.5605 4.8197 17 1 11.6747 1.4589 5.7059 18 1 13.6113 2.6423 4.8526 19 1 11.5512 3.8449 5.2906 20 6 5.5561 2.5843 -0.0006 21 9 6.1751 3.7851 -0.0006 22 6 4.1756 2.5196 -0.0006 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 3.8150 -0.8558 -0.0008 27 1 6.2699 -0.7183 -0.0010 28 1 8.2217 0.5508 -0.3679 29 1 8.1313 2.3021 -0.6727 30 1 7.8767 2.5962 1.7263 31 1 10.1840 0.8960 1.0371 32 1 10.0941 2.6473 0.7320 33 1 13.3933 2.1869 2.3013 34 1 3.5911 3.4277 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:57 Heat of formation + Delta-G solvation = -128.293088 kcal Electronic energy + Delta-G solvation = -19154.421888 eV Core-core repulsion = 15772.861603 eV Total energy + Delta-G solvation = -3381.560285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.04440 -41.67866 -39.96079 -37.61932 -37.10587 -34.77949 -32.82110 -31.77555 -29.56208 -28.38951 -26.49306 -24.13574 -23.87313 -23.11574 -21.93433 -19.49741 -18.69005 -18.35097 -17.47002 -17.46115 -17.06714 -16.93019 -16.70019 -16.41464 -15.97584 -15.19289 -14.99156 -14.79248 -14.45643 -14.38988 -14.21871 -13.52629 -13.32117 -13.28651 -13.00286 -12.89938 -12.65196 -12.50902 -12.30627 -12.02171 -11.83739 -11.72252 -11.35518 -10.67096 -10.20534 -9.88403 -9.22552 -8.23488 -6.34716 -0.59566 0.06750 1.30065 1.41883 1.45127 1.53219 1.54092 2.39272 2.48984 3.10115 3.14528 3.39739 3.59317 3.63867 3.81876 3.93094 4.07030 4.31461 4.36211 4.46829 4.52602 4.66153 4.73171 4.85391 4.97037 5.04112 5.05293 5.21765 5.23841 5.28685 5.57884 5.65184 5.97836 6.33181 6.56696 6.58997 6.83160 7.35877 8.87861 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.003358 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.117507 B = 8336.455224 C = 8415.799923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.518 3.482 4 O -0.533 6.533 5 C -0.114 4.114 6 C -0.051 4.051 7 C -0.082 4.082 8 C -0.074 4.074 9 C 0.089 3.911 10 N -0.679 5.679 11 C 0.208 3.792 12 C -0.539 4.539 13 H 0.063 0.937 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.075 3.925 21 F -0.145 7.145 22 C -0.092 4.092 23 H 0.138 0.862 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.177 0.823 27 H 0.167 0.833 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.331 0.669 31 H 0.011 0.989 32 H -0.039 1.039 33 H 0.266 0.734 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 -6.618 -6.096 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.364 3.636 4 O -0.425 6.425 5 C -0.116 4.116 6 C -0.069 4.069 7 C -0.100 4.100 8 C -0.075 4.075 9 C -0.039 4.039 10 N -0.309 5.309 11 C 0.081 3.919 12 C -0.577 4.577 13 H 0.081 0.919 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.194 1.194 20 C 0.056 3.944 21 F -0.124 7.124 22 C -0.111 4.111 23 H 0.156 0.844 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.195 0.805 27 H 0.185 0.815 28 H 0.113 0.887 29 H 0.046 0.954 30 H 0.147 0.853 31 H 0.029 0.971 32 H -0.021 1.021 33 H 0.075 0.925 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.966 -6.966 -5.958 23.802 hybrid contribution 0.773 1.775 0.187 1.946 sum -21.193 -5.190 -5.772 22.570 Atomic orbital electron populations 1.23647 0.73894 1.06164 1.02738 1.86525 1.25457 1.30927 1.83600 1.21063 0.88815 0.81760 0.71947 1.90833 1.67319 1.37111 1.47196 1.18860 0.89430 0.94253 1.09021 1.21786 0.93023 0.98744 0.93315 1.21252 0.94594 0.96894 0.97255 1.20332 0.95767 0.93152 0.98280 1.20936 0.89818 1.02124 0.91061 1.60706 1.08531 1.42657 1.18983 1.19247 0.82945 0.94006 0.95721 1.21495 0.92418 1.49061 0.94773 0.91885 1.25926 0.96692 0.94782 1.02110 1.70067 1.02008 1.50832 1.34329 0.85389 0.76930 0.79109 0.78901 1.19113 1.20670 1.19379 1.17510 0.90591 0.80535 1.05794 1.91500 1.83125 1.43618 1.94158 1.21102 0.92003 0.99193 0.98849 0.84412 0.91871 0.91687 0.80540 0.81543 0.88682 0.95363 0.85269 0.97062 1.02102 0.92506 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.93 9.82 -56.14 -0.55 -6.48 16 3 C 0.52 11.57 7.90 70.33 0.56 12.13 16 4 O -0.53 -14.74 16.14 19.94 0.32 -14.42 16 5 C -0.11 -2.54 5.87 -20.10 -0.12 -2.65 16 6 C -0.05 -0.92 9.62 22.54 0.22 -0.70 16 7 C -0.08 -1.73 9.65 22.22 0.21 -1.52 16 8 C -0.07 -2.09 5.41 -19.76 -0.11 -2.19 16 9 C 0.09 3.09 5.52 85.56 0.47 3.57 16 10 N -0.68 -29.36 6.48 -521.98 -3.38 -32.74 16 11 C 0.21 11.14 5.44 85.56 0.47 11.60 16 12 C -0.54 -30.94 9.32 25.60 0.24 -30.70 16 13 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 16 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 C 0.08 2.19 7.23 22.34 0.16 2.35 16 21 F -0.15 -4.83 16.64 44.97 0.75 -4.08 16 22 C -0.09 -2.37 9.57 22.58 0.22 -2.15 16 23 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.18 2.05 7.61 -2.91 -0.02 2.03 16 27 H 0.17 2.81 8.03 -2.91 -0.02 2.79 16 28 H 0.09 3.04 8.00 -2.38 -0.02 3.02 16 29 H 0.03 1.03 7.94 -2.39 -0.02 1.01 16 30 H 0.33 14.35 8.71 -89.69 -0.78 13.56 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H -0.04 -2.24 8.14 -2.39 -0.02 -2.26 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.15 3.69 7.65 -2.92 -0.02 3.66 16 Total: -1.00 -68.83 309.51 3.77 -65.06 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.34 Total: 10.30 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 3.98 Total: -8.10 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.10 Total: -88.64 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.23 Total: -20.90 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.75 Total: -4.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.83 3.77 -65.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.229 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds