Wall clock time and date at job start Mon Mar 30 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00018 * 2 1 4 4 N 1.46899 * 109.47091 * 124.40966 * 3 2 1 5 5 C 1.46894 * 111.00431 * 75.32384 * 4 3 2 6 6 C 1.50702 * 109.47368 * 195.73337 * 5 4 3 7 7 H 1.07999 * 119.99806 * 4.93617 * 6 5 4 8 8 C 1.37875 * 119.99808 * 184.94249 * 6 5 4 9 9 N 1.31514 * 120.00554 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46712 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47012 * 120.00089 * 10 8 6 13 13 H 1.48501 * 109.47352 * 240.00347 * 10 8 6 14 14 C 1.46897 * 111.00058 * 199.28212 * 4 3 2 15 15 C 1.50706 * 109.47417 * 66.04348 * 14 4 3 16 16 C 1.34450 * 125.71304 * 90.00097 * 15 14 4 17 17 C 1.41385 * 106.94203 * 180.02562 * 16 15 14 18 18 C 1.35445 * 106.77620 * 359.97438 * 17 16 15 19 19 S 1.76197 * 125.87288 * 180.02562 * 18 17 16 20 20 C 1.81400 * 103.00086 * 179.97438 * 19 18 17 21 21 O 1.34418 * 108.25262 * 359.73498 * 18 17 16 22 22 H 1.07996 * 120.00223 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99852 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99852 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47436 * 4.40979 * 3 2 1 26 26 H 1.09004 * 109.47175 * 244.40633 * 3 2 1 27 27 H 1.08999 * 109.47286 * 315.73075 * 5 4 3 28 28 H 1.09003 * 109.47082 * 75.72902 * 5 4 3 29 29 H 0.96998 * 120.00300 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47324 * 186.04193 * 14 4 3 31 31 H 1.08998 * 109.47214 * 306.04566 * 14 4 3 32 32 H 1.07999 * 126.53325 * 359.97438 * 16 15 14 33 33 H 1.08002 * 126.61765 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47617 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47000 * 300.00177 * 20 19 18 36 36 H 1.09001 * 109.47048 * 59.99686 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9861 1.3378 1.1426 5 6 4.1576 0.4859 0.8981 6 6 4.8749 0.2325 2.1990 7 1 4.4555 0.5940 3.1262 8 6 6.0667 -0.4607 2.2053 9 7 6.5779 -0.9004 1.0762 10 14 6.9563 -0.7741 3.8177 11 1 6.1792 -0.1805 4.9353 12 1 7.0918 -2.2373 4.0320 13 1 8.3048 -0.1542 3.7678 14 6 3.3923 2.7152 1.4521 15 6 2.1964 3.4953 1.9344 16 6 1.7949 3.6055 3.2128 17 6 0.6401 4.4213 3.2130 18 6 0.4034 4.7641 1.9242 19 16 -0.9195 5.7774 1.3517 20 6 -0.6470 5.8297 -0.4410 21 8 1.3549 4.2036 1.1579 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3579 2.1321 0.0790 26 1 2.6297 1.3978 -0.9269 27 1 3.8338 -0.4632 0.4709 28 1 4.8318 0.9860 0.2027 29 1 7.4165 -1.3877 1.0806 30 1 4.1558 2.7028 2.2299 31 1 3.7950 3.1854 0.5550 32 1 2.2644 3.1559 4.0752 33 1 0.0593 4.7153 4.0748 34 1 -1.4202 6.4395 -0.9084 35 1 0.3318 6.2626 -0.6473 36 1 -0.6893 4.8181 -0.8446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894841960.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:36 Heat of formation + Delta-G solvation = 40.858465 kcal Electronic energy + Delta-G solvation = -18030.471522 eV Core-core repulsion = 15222.459374 eV Total energy + Delta-G solvation = -2808.012147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.23844 -37.16457 -33.37821 -32.84918 -32.38790 -30.12736 -29.14826 -27.27154 -26.00837 -23.69719 -21.67485 -21.32521 -20.10928 -19.04756 -18.03108 -16.60606 -16.01960 -15.65777 -14.93636 -14.80684 -14.57035 -13.92020 -13.85863 -13.68720 -13.57652 -12.82960 -12.58785 -12.27778 -12.19564 -12.00356 -11.86444 -11.26206 -11.20767 -10.88472 -10.75101 -10.60536 -10.46421 -9.97052 -9.91167 -9.31148 -9.14833 -8.97387 -8.48393 -7.41986 -7.24432 -6.08047 -4.10220 1.22384 1.79824 1.85037 2.71302 2.88526 3.28370 3.36469 3.41168 3.68852 4.39381 4.86002 4.90142 5.01244 5.18909 5.25015 5.27547 5.43196 5.48499 5.65300 5.81398 5.88143 5.93716 6.06296 6.12337 6.20704 6.30929 6.35207 6.76379 6.98603 7.09993 7.22677 7.25692 7.32262 7.74634 7.96133 8.06304 8.42958 8.98513 9.54966 11.02352 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.004891 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.268241 B = 5723.213651 C = 6393.987984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C 0.074 3.926 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.510 4.510 7 H 0.066 0.934 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.140 3.860 15 C 0.021 3.979 16 C -0.186 4.186 17 C -0.170 4.170 18 C -0.049 4.049 19 S -0.041 6.041 20 C -0.148 4.148 21 O -0.177 6.177 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.034 0.966 28 H -0.001 1.001 29 H 0.261 0.739 30 H 0.118 0.882 31 H 0.038 0.962 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 11.245 -1.739 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.135 4.135 3 C -0.054 4.054 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.548 4.548 7 H 0.084 0.916 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.012 3.988 15 C -0.033 4.033 16 C -0.207 4.207 17 C -0.197 4.197 18 C -0.209 4.209 19 S 0.195 5.805 20 C -0.317 4.317 21 O -0.075 6.075 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.129 0.871 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.017 0.983 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.056 0.944 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.632 11.558 -1.218 17.914 hybrid contribution 1.917 -0.644 -0.408 2.063 sum -11.715 10.915 -1.626 16.094 Atomic orbital electron populations 1.23607 0.95793 1.00914 1.04393 1.22937 0.95549 0.98756 0.96257 1.21262 0.95672 0.95424 0.93021 1.62198 1.18824 1.07179 1.36923 1.19834 0.84881 0.91522 0.97075 1.21199 1.05068 1.35163 0.93391 0.91602 1.24987 0.97251 0.95752 0.96480 1.69962 1.20052 1.38078 1.25636 0.86456 0.79407 0.77992 0.83694 1.19544 1.21013 1.21089 1.20593 0.89492 0.87377 1.01288 1.22899 0.94421 0.96381 0.89617 1.21517 0.98266 1.03401 0.97564 1.21510 0.99956 1.03010 0.95224 1.23928 0.97131 1.06852 0.92987 1.85464 1.29565 1.59650 1.05782 1.23566 1.06646 1.06733 0.94709 1.84195 1.32805 1.52882 1.37661 0.88910 0.89448 0.87097 0.91712 0.94579 0.94785 0.98337 0.92906 0.86368 0.94405 0.82867 0.83427 0.87364 0.89474 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.24 14.32 29.01 0.42 -2.83 16 2 C -0.12 -2.08 9.33 -36.03 -0.34 -2.42 16 3 C 0.07 1.39 5.29 -4.98 -0.03 1.37 16 4 N -0.53 -11.19 4.37 -238.97 -1.04 -12.23 16 5 C 0.19 4.79 4.55 -4.98 -0.02 4.76 16 6 C -0.51 -13.77 8.38 -34.44 -0.29 -14.06 16 7 H 0.07 1.77 7.71 -52.49 -0.40 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.70 5.34 -4.97 -0.03 2.67 16 15 C 0.02 0.37 5.93 -35.64 -0.21 0.16 16 16 C -0.19 -3.10 10.80 -39.72 -0.43 -3.52 16 17 C -0.17 -2.56 10.88 -39.38 -0.43 -2.99 16 18 C -0.05 -0.74 7.35 29.74 0.22 -0.52 16 19 S -0.04 -0.48 22.75 -107.50 -2.45 -2.92 16 20 C -0.15 -1.34 10.47 101.05 1.06 -0.28 16 21 O -0.18 -2.97 9.32 4.46 0.04 -2.93 16 22 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 23 H 0.09 1.30 7.84 -52.49 -0.41 0.88 16 24 H 0.11 2.09 7.24 -52.49 -0.38 1.70 16 25 H 0.06 1.17 5.72 -51.93 -0.30 0.87 16 26 H 0.04 0.68 8.01 -51.93 -0.42 0.26 16 27 H 0.03 0.90 6.82 -51.93 -0.35 0.55 16 28 H 0.00 -0.03 8.06 -51.93 -0.42 -0.45 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.12 2.35 7.19 -51.93 -0.37 1.98 16 31 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -29.16 322.29 -8.20 -37.36 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.15 Total: 1.20 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.17 Total: -16.20 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.31 Total: -37.46 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.45 Total: -2.92 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.16 -8.20 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894841960.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.218 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds