Wall clock time and date at job start Mon Mar 30 2020 01:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00018 * 2 1 4 4 N 1.46899 * 109.47091 * 124.40966 * 3 2 1 5 5 C 1.46894 * 111.00431 * 75.32384 * 4 3 2 6 6 C 1.50702 * 109.47368 * 195.73337 * 5 4 3 7 7 H 1.07999 * 119.99806 * 4.93617 * 6 5 4 8 8 C 1.37875 * 119.99808 * 184.94249 * 6 5 4 9 9 N 1.31514 * 120.00554 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46712 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47012 * 120.00089 * 10 8 6 13 13 H 1.48501 * 109.47352 * 240.00347 * 10 8 6 14 14 C 1.46897 * 111.00058 * 199.28212 * 4 3 2 15 15 C 1.50706 * 109.47417 * 66.04348 * 14 4 3 16 16 C 1.34450 * 125.71304 * 90.00097 * 15 14 4 17 17 C 1.41385 * 106.94203 * 180.02562 * 16 15 14 18 18 C 1.35445 * 106.77620 * 359.97438 * 17 16 15 19 19 S 1.76197 * 125.87288 * 180.02562 * 18 17 16 20 20 C 1.81400 * 103.00086 * 179.97438 * 19 18 17 21 21 O 1.34418 * 108.25262 * 359.73498 * 18 17 16 22 22 H 1.07996 * 120.00223 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99852 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99852 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47436 * 4.40979 * 3 2 1 26 26 H 1.09004 * 109.47175 * 244.40633 * 3 2 1 27 27 H 1.08999 * 109.47286 * 315.73075 * 5 4 3 28 28 H 1.09003 * 109.47082 * 75.72902 * 5 4 3 29 29 H 0.96998 * 120.00300 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47324 * 186.04193 * 14 4 3 31 31 H 1.08998 * 109.47214 * 306.04566 * 14 4 3 32 32 H 1.07999 * 126.53325 * 359.97438 * 16 15 14 33 33 H 1.08002 * 126.61765 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47617 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47000 * 300.00177 * 20 19 18 36 36 H 1.09001 * 109.47048 * 59.99686 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9861 1.3378 1.1426 5 6 4.1576 0.4859 0.8981 6 6 4.8749 0.2325 2.1990 7 1 4.4555 0.5940 3.1262 8 6 6.0667 -0.4607 2.2053 9 7 6.5779 -0.9004 1.0762 10 14 6.9563 -0.7741 3.8177 11 1 6.1792 -0.1805 4.9353 12 1 7.0918 -2.2373 4.0320 13 1 8.3048 -0.1542 3.7678 14 6 3.3923 2.7152 1.4521 15 6 2.1964 3.4953 1.9344 16 6 1.7949 3.6055 3.2128 17 6 0.6401 4.4213 3.2130 18 6 0.4034 4.7641 1.9242 19 16 -0.9195 5.7774 1.3517 20 6 -0.6470 5.8297 -0.4410 21 8 1.3549 4.2036 1.1579 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3579 2.1321 0.0790 26 1 2.6297 1.3978 -0.9269 27 1 3.8338 -0.4632 0.4709 28 1 4.8318 0.9860 0.2027 29 1 7.4165 -1.3877 1.0806 30 1 4.1558 2.7028 2.2299 31 1 3.7950 3.1854 0.5550 32 1 2.2644 3.1559 4.0752 33 1 0.0593 4.7153 4.0748 34 1 -1.4202 6.4395 -0.9084 35 1 0.3318 6.2626 -0.6473 36 1 -0.6893 4.8181 -0.8446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894841960.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:35 Heat of formation + Delta-G solvation = 24.335481 kcal Electronic energy + Delta-G solvation = -18031.188012 eV Core-core repulsion = 15222.459374 eV Total energy + Delta-G solvation = -2808.728638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49009 -38.81255 -35.05453 -34.41790 -33.87599 -31.57991 -29.89593 -29.15167 -27.41003 -25.52373 -23.02060 -22.88055 -21.44955 -20.50768 -19.18439 -18.61168 -17.42061 -16.91262 -16.62498 -16.43742 -15.80222 -15.56473 -15.20128 -14.49547 -14.47313 -14.46337 -13.88876 -13.81284 -13.75282 -13.52897 -13.17108 -13.06941 -12.74973 -12.56033 -12.36975 -12.13704 -11.82279 -11.71840 -11.28513 -11.08599 -10.62528 -10.44508 -10.26995 -9.13308 -8.30786 -8.19384 -6.29467 0.19880 0.54711 0.97265 1.36991 1.42403 1.44137 1.56980 1.61772 2.40885 2.43748 3.13809 3.42527 3.81603 3.97775 4.07235 4.18676 4.21284 4.24753 4.38518 4.46004 4.60838 4.65337 4.70344 4.80899 4.93375 4.95482 4.99847 5.15023 5.17174 5.51143 5.66445 5.72180 5.86388 5.99370 6.05112 6.20886 6.50900 6.86231 7.40559 8.91333 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.004891 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.268241 B = 5723.213651 C = 6393.987984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.080 3.920 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.521 4.521 7 H 0.065 0.935 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.146 3.854 15 C -0.004 4.004 16 C -0.185 4.185 17 C -0.180 4.180 18 C -0.052 4.052 19 S -0.024 6.024 20 C -0.148 4.148 21 O -0.184 6.184 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.012 0.988 28 H -0.029 1.029 29 H 0.264 0.736 30 H 0.105 0.895 31 H 0.037 0.963 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 12.294 -0.944 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C -0.047 4.047 4 N -0.256 5.256 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.083 0.917 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.018 3.982 15 C -0.057 4.057 16 C -0.206 4.206 17 C -0.207 4.207 18 C -0.212 4.212 19 S 0.213 5.787 20 C -0.316 4.316 21 O -0.083 6.083 22 H 0.134 0.866 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.030 0.970 28 H -0.011 1.011 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.055 0.945 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.158 0.842 35 H 0.105 0.895 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.532 12.622 -0.422 20.019 hybrid contribution 2.333 -0.875 -0.729 2.596 sum -13.200 11.747 -1.151 17.707 Atomic orbital electron populations 1.23849 0.94715 1.02563 1.00148 1.22801 0.96526 0.97533 1.00211 1.21244 0.95233 0.96513 0.91744 1.62128 1.17377 1.08044 1.38094 1.19453 0.85585 0.91025 0.95663 1.21469 1.05500 1.35035 0.93915 0.91698 1.25847 0.98065 0.95397 0.99929 1.70082 1.20599 1.38870 1.27884 0.85382 0.78185 0.77834 0.79534 1.18608 1.20668 1.20464 1.20388 0.90420 0.86577 1.00796 1.22460 0.95037 0.98114 0.90115 1.21722 0.98638 1.03047 0.97221 1.21782 0.99736 1.02944 0.96229 1.24659 0.97034 1.06114 0.93372 1.85453 1.27329 1.58130 1.07808 1.23720 1.07799 1.07271 0.92800 1.84164 1.33153 1.53056 1.37923 0.86637 0.88178 0.88852 0.90633 0.95343 0.96992 1.01084 0.92700 0.87668 0.94515 0.82496 0.81051 0.84223 0.89544 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 14.32 67.78 0.97 -4.10 16 2 C -0.15 -5.46 9.33 25.64 0.24 -5.22 16 3 C 0.08 3.07 5.29 85.56 0.45 3.52 16 4 N -0.53 -23.32 4.37 -909.95 -3.97 -27.29 16 5 C 0.21 10.93 4.55 85.56 0.39 11.32 16 6 C -0.52 -28.87 8.38 25.60 0.21 -28.66 16 7 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 8 C 0.01 0.32 5.46 84.65 0.46 0.79 16 9 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 10 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 C 0.15 5.78 5.34 85.56 0.46 6.23 16 15 C 0.00 -0.12 5.93 24.82 0.15 0.02 16 16 C -0.19 -6.02 10.80 22.18 0.24 -5.78 16 17 C -0.18 -5.09 10.88 22.40 0.24 -4.84 16 18 C -0.05 -1.48 7.35 67.17 0.49 -0.98 16 19 S -0.02 -0.48 22.75 -56.49 -1.29 -1.77 16 20 C -0.15 -2.25 10.47 113.37 1.19 -1.07 16 21 O -0.18 -6.01 9.32 -6.95 -0.06 -6.07 16 22 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 23 H 0.10 2.67 7.84 -2.91 -0.02 2.64 16 24 H 0.09 3.65 7.24 -2.91 -0.02 3.63 16 25 H 0.08 2.70 5.72 -2.39 -0.01 2.69 16 26 H 0.03 1.12 8.01 -2.39 -0.02 1.10 16 27 H 0.01 0.68 6.82 -2.39 -0.02 0.66 16 28 H -0.03 -1.62 8.06 -2.39 -0.02 -1.64 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.11 4.36 7.19 -2.39 -0.02 4.34 16 31 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.16 4.85 8.06 -2.91 -0.02 4.82 16 33 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.06 322.29 3.54 -59.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.05 Total: 13.76 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 5.50 Total: -28.77 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.69 Total: -82.32 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.06 Total: -6.07 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -1.29 Total: -1.77 kcal Total: -63.06 3.54 -59.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894841960.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.857 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds