Wall clock time and date at job start Mon Mar 30 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00521 * 2 1 4 4 C 1.53002 * 109.47596 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46867 * 64.99668 * 4 3 2 6 6 C 1.40000 * 119.99414 * 179.97438 * 5 4 3 7 7 C 1.38641 * 120.10373 * 0.02562 * 6 5 4 8 8 C 1.38284 * 120.00818 * 179.97438 * 7 6 5 9 9 C 1.38275 * 120.20418 * 359.97438 * 8 7 6 10 10 C 1.38247 * 120.19312 * 0.02562 * 9 8 7 11 11 C 1.38724 * 119.99820 * 0.02562 * 10 9 8 12 12 S 1.76201 * 120.10569 * 179.97438 * 11 10 9 13 13 C 1.81406 * 102.99596 * 359.97438 * 12 11 10 14 14 C 1.50701 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47522 * 60.00238 * 18 16 14 20 20 H 1.48503 * 109.47464 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47248 * 299.99972 * 18 16 14 22 22 H 1.08999 * 109.47317 * 299.99939 * 1 2 3 23 23 H 1.08997 * 109.47264 * 59.99970 * 1 2 3 24 24 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 59.99583 * 3 2 1 26 26 H 1.09003 * 109.46697 * 299.99974 * 3 2 1 27 27 H 1.08999 * 109.46712 * 305.00098 * 4 3 2 28 28 H 1.08999 * 109.47173 * 184.99762 * 4 3 2 29 29 H 0.97001 * 120.00343 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.99368 * 359.95163 * 7 6 5 31 31 H 1.08004 * 119.90252 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.90390 * 179.74422 * 9 8 7 33 33 H 1.08007 * 120.00130 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47274 * 300.00167 * 13 12 11 35 35 H 1.09004 * 109.46798 * 60.00268 * 13 12 11 36 36 H 0.97006 * 119.99920 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 5.3392 0.3483 -1.4853 7 6 6.2747 0.7202 -0.5321 8 6 7.6210 0.5055 -0.7636 9 6 8.0390 -0.0803 -1.9444 10 6 7.1134 -0.4544 -2.9007 11 6 5.7608 -0.2419 -2.6774 12 16 4.5787 -0.7169 -3.8946 13 6 5.6097 -1.4155 -5.2137 14 6 4.7306 -1.8753 -6.3481 15 1 3.6588 -1.7592 -6.2819 16 6 5.2943 -2.4450 -7.4699 17 7 6.5992 -2.5876 -7.5498 18 14 4.2046 -3.0155 -8.8757 19 1 3.4369 -1.8607 -9.4071 20 1 5.0483 -3.5884 -9.9551 21 1 3.2619 -4.0516 -8.3823 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.8514 0.5681 0.8409 28 1 3.9786 2.1764 0.0889 29 1 3.3224 0.3038 -1.9209 30 1 5.9519 1.1779 0.3913 31 1 8.3482 0.7955 -0.0197 32 1 9.0919 -0.2419 -2.1220 33 1 7.4433 -0.9121 -3.8217 34 1 6.3013 -0.6548 -5.5757 35 1 6.1734 -2.2631 -4.8238 36 1 6.9958 -2.9888 -8.3389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905105362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:11 Heat of formation + Delta-G solvation = -29.113896 kcal Electronic energy + Delta-G solvation = -17356.735286 eV Core-core repulsion = 14545.688910 eV Total energy + Delta-G solvation = -2811.046376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.02608 -38.03214 -35.22347 -33.19405 -30.88134 -30.49946 -28.50484 -27.65603 -26.26944 -23.54164 -23.03044 -21.92261 -20.83501 -17.65397 -16.79476 -16.46455 -16.20893 -16.10606 -15.45884 -14.89047 -14.56650 -14.12330 -14.00692 -13.56532 -13.30256 -12.86169 -12.78961 -12.37308 -12.30581 -12.03394 -11.82601 -11.48664 -11.32499 -10.88890 -10.88650 -10.65663 -9.92665 -9.89696 -9.79640 -9.63388 -9.06069 -8.98540 -8.57473 -7.40998 -6.25358 -6.21394 -4.26522 1.79693 2.04071 2.62492 3.27133 3.30498 3.34456 3.51578 3.65734 3.86975 4.27425 4.33802 4.76521 4.96494 5.08047 5.15913 5.18216 5.19074 5.29750 5.43745 5.46370 5.54583 5.65439 5.73288 5.93836 6.11271 6.36580 6.58785 6.78652 6.93275 7.03691 7.05195 7.08161 7.24502 7.66309 7.71616 7.96743 8.04250 8.74136 9.36756 10.89903 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.005213 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.847815 B = 5369.721502 C = 7029.091658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.049 3.951 4 C 0.131 3.869 5 N -0.740 5.740 6 C 0.224 3.776 7 C -0.191 4.191 8 C -0.094 4.094 9 C -0.161 4.161 10 C -0.089 4.089 11 C -0.136 4.136 12 S -0.178 6.178 13 C 0.078 3.922 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.068 3.932 17 N -0.890 5.890 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.407 0.593 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 8.078 15.503 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.373 5.373 6 C 0.116 3.884 7 C -0.216 4.216 8 C -0.115 4.115 9 C -0.182 4.182 10 C -0.114 4.114 11 C -0.253 4.253 12 S 0.066 5.934 13 C -0.069 4.069 14 C -0.556 4.556 15 H 0.085 0.915 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.734 3.266 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.555 7.991 15.478 18.611 hybrid contribution 0.498 -0.295 -0.999 1.155 sum -6.058 7.696 14.478 17.480 Atomic orbital electron populations 1.22755 0.80966 1.03001 0.99813 1.87984 1.19722 1.27215 1.95361 1.22784 0.93481 0.85555 1.01007 1.21276 0.91905 0.98047 0.88146 1.44631 1.04061 1.68568 1.20059 1.17306 0.84144 0.94659 0.92257 1.20399 0.92763 1.09031 0.99402 1.20748 0.94764 0.99033 0.97004 1.20785 0.98870 1.03691 0.94873 1.21173 0.91327 0.99099 0.99790 1.21486 0.97599 1.07888 0.98337 1.84937 1.16681 1.75689 1.16064 1.21300 0.96063 0.98062 0.91435 1.20593 0.93421 1.41367 1.00269 0.91512 1.24941 0.95270 0.95195 0.98249 1.69939 1.09807 1.43476 1.29554 0.86400 0.80092 0.79156 0.80928 1.19901 1.20994 1.19884 0.94259 0.93915 0.89474 0.91965 0.92498 0.91694 0.91107 0.75564 0.86611 0.86777 0.86696 0.85261 0.93956 0.93933 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.73 10.65 -35.23 -0.38 -5.11 16 3 C 0.05 0.49 6.07 37.16 0.23 0.71 16 4 C 0.13 1.49 5.30 -4.04 -0.02 1.47 16 5 N -0.74 -11.50 5.63 -58.44 -0.33 -11.83 16 6 C 0.22 3.94 6.66 -83.49 -0.56 3.38 16 7 C -0.19 -2.90 9.31 -39.42 -0.37 -3.27 16 8 C -0.09 -1.38 10.04 -39.55 -0.40 -1.78 16 9 C -0.16 -2.65 10.04 -39.56 -0.40 -3.05 16 10 C -0.09 -1.74 9.36 -39.40 -0.37 -2.11 16 11 C -0.14 -2.76 6.12 -38.92 -0.24 -3.00 16 12 S -0.18 -4.01 20.37 -107.50 -2.19 -6.20 16 13 C 0.08 2.05 4.09 36.01 0.15 2.20 16 14 C -0.52 -14.54 9.13 -34.44 -0.31 -14.86 16 15 H 0.07 1.86 7.71 -52.48 -0.40 1.45 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 17 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 18 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 28 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 29 H 0.41 6.83 7.02 -40.82 -0.29 6.54 16 30 H 0.12 1.43 6.74 -52.49 -0.35 1.08 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.13 2.71 5.88 -52.48 -0.31 2.41 16 34 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 35 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -30.59 317.27 -8.75 -39.34 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.08 Total: 4.92 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.27 Total: -17.12 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.41 Total: -36.89 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.38 Total: -5.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.19 Total: -6.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.59 -8.75 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905105362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.226 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds