Wall clock time and date at job start Mon Mar 30 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00521 * 2 1 4 4 C 1.53002 * 109.47596 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46867 * 64.99668 * 4 3 2 6 6 C 1.40000 * 119.99414 * 179.97438 * 5 4 3 7 7 C 1.38641 * 120.10373 * 0.02562 * 6 5 4 8 8 C 1.38284 * 120.00818 * 179.97438 * 7 6 5 9 9 C 1.38275 * 120.20418 * 359.97438 * 8 7 6 10 10 C 1.38247 * 120.19312 * 0.02562 * 9 8 7 11 11 C 1.38724 * 119.99820 * 0.02562 * 10 9 8 12 12 S 1.76201 * 120.10569 * 179.97438 * 11 10 9 13 13 C 1.81406 * 102.99596 * 359.97438 * 12 11 10 14 14 C 1.50701 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47522 * 60.00238 * 18 16 14 20 20 H 1.48503 * 109.47464 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47248 * 299.99972 * 18 16 14 22 22 H 1.08999 * 109.47317 * 299.99939 * 1 2 3 23 23 H 1.08997 * 109.47264 * 59.99970 * 1 2 3 24 24 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 59.99583 * 3 2 1 26 26 H 1.09003 * 109.46697 * 299.99974 * 3 2 1 27 27 H 1.08999 * 109.46712 * 305.00098 * 4 3 2 28 28 H 1.08999 * 109.47173 * 184.99762 * 4 3 2 29 29 H 0.97001 * 120.00343 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.99368 * 359.95163 * 7 6 5 31 31 H 1.08004 * 119.90252 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.90390 * 179.74422 * 9 8 7 33 33 H 1.08007 * 120.00130 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47274 * 300.00167 * 13 12 11 35 35 H 1.09004 * 109.46798 * 60.00268 * 13 12 11 36 36 H 0.97006 * 119.99920 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 5.3392 0.3483 -1.4853 7 6 6.2747 0.7202 -0.5321 8 6 7.6210 0.5055 -0.7636 9 6 8.0390 -0.0803 -1.9444 10 6 7.1134 -0.4544 -2.9007 11 6 5.7608 -0.2419 -2.6774 12 16 4.5787 -0.7169 -3.8946 13 6 5.6097 -1.4155 -5.2137 14 6 4.7306 -1.8753 -6.3481 15 1 3.6588 -1.7592 -6.2819 16 6 5.2943 -2.4450 -7.4699 17 7 6.5992 -2.5876 -7.5498 18 14 4.2046 -3.0155 -8.8757 19 1 3.4369 -1.8607 -9.4071 20 1 5.0483 -3.5884 -9.9551 21 1 3.2619 -4.0516 -8.3823 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.8514 0.5681 0.8409 28 1 3.9786 2.1764 0.0889 29 1 3.3224 0.3038 -1.9209 30 1 5.9519 1.1779 0.3913 31 1 8.3482 0.7955 -0.0197 32 1 9.0919 -0.2419 -2.1220 33 1 7.4433 -0.9121 -3.8217 34 1 6.3013 -0.6548 -5.5757 35 1 6.1734 -2.2631 -4.8238 36 1 6.9958 -2.9888 -8.3389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905105362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:11 Heat of formation + Delta-G solvation = -48.206031 kcal Electronic energy + Delta-G solvation = -17357.563183 eV Core-core repulsion = 14545.688910 eV Total energy + Delta-G solvation = -2811.874274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26304 -38.91950 -36.36737 -35.33889 -32.08728 -31.76208 -30.57911 -28.73934 -27.06935 -25.40411 -24.33360 -23.18964 -22.06146 -19.19442 -18.26183 -17.61294 -17.55646 -17.29372 -16.73153 -16.38194 -15.67056 -15.51972 -15.12252 -14.84850 -14.68277 -14.57965 -14.47815 -14.18900 -13.59841 -13.09208 -12.95692 -12.74623 -12.62105 -12.59423 -12.26103 -12.12192 -11.69671 -11.58666 -11.01201 -10.88027 -10.82166 -10.65152 -10.40305 -8.79923 -8.36124 -7.84537 -6.51092 0.42925 0.71159 0.93164 1.38804 1.42371 1.51304 1.89973 2.34614 2.55110 2.86375 2.94206 2.98466 3.94610 3.99534 4.19734 4.27062 4.39306 4.48221 4.53669 4.57356 4.59367 4.67587 4.75432 4.85954 4.87338 4.87833 4.89265 5.04082 5.28744 5.48977 5.52660 5.71287 5.82406 5.97425 6.20982 6.47473 6.55581 6.72691 7.17403 8.76135 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.005213 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.847815 B = 5369.721502 C = 7029.091658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.744 5.744 6 C 0.222 3.778 7 C -0.186 4.186 8 C -0.074 4.074 9 C -0.169 4.169 10 C -0.110 4.110 11 C -0.174 4.174 12 S -0.179 6.179 13 C 0.087 3.913 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.017 3.983 17 N -0.923 5.923 18 Si 0.980 3.020 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.266 1.266 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.397 0.603 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 9.347 17.648 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.028 4.028 4 C 0.002 3.998 5 N -0.375 5.375 6 C 0.112 3.888 7 C -0.210 4.210 8 C -0.095 4.095 9 C -0.190 4.190 10 C -0.135 4.135 11 C -0.291 4.291 12 S 0.064 5.936 13 C -0.060 4.060 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.562 5.562 18 Si 0.802 3.198 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.190 1.190 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.185 9.284 17.670 21.214 hybrid contribution 0.744 -0.609 -1.473 1.759 sum -6.440 8.674 16.197 19.469 Atomic orbital electron populations 1.22892 0.79575 1.03514 1.00971 1.87932 1.21442 1.28746 1.95627 1.22893 0.92455 0.85013 1.02472 1.21600 0.93145 0.98918 0.86148 1.44893 1.03085 1.68277 1.21236 1.17555 0.85675 0.93967 0.91570 1.20864 0.92442 1.07848 0.99842 1.21266 0.95593 0.96158 0.96517 1.21052 0.99299 1.03710 0.94951 1.21099 0.92145 1.00362 0.99857 1.21493 0.97099 1.11343 0.99143 1.84554 1.16891 1.76285 1.15899 1.20893 0.95912 0.96430 0.92782 1.20936 0.93567 1.42179 1.01448 0.91667 1.25943 0.96744 0.94817 1.00965 1.70062 1.11657 1.43907 1.30528 0.85281 0.78220 0.78939 0.77314 1.18924 1.19958 1.19036 0.92095 0.93700 0.89432 0.88740 0.92636 0.91180 0.88613 0.76768 0.82821 0.82291 0.84668 0.88419 0.96571 0.96705 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -9.70 10.65 -148.98 -1.59 -11.29 16 3 C 0.05 0.84 6.07 71.98 0.44 1.28 16 4 C 0.13 2.48 5.30 86.38 0.46 2.94 16 5 N -0.74 -22.23 5.63 -338.82 -1.91 -24.14 16 6 C 0.22 7.53 6.66 38.25 0.25 7.78 16 7 C -0.19 -4.97 9.31 22.38 0.21 -4.76 16 8 C -0.07 -1.92 10.04 22.29 0.22 -1.69 16 9 C -0.17 -5.38 10.04 22.28 0.22 -5.16 16 10 C -0.11 -4.52 9.36 22.39 0.21 -4.31 16 11 C -0.17 -7.28 6.12 22.70 0.14 -7.14 16 12 S -0.18 -8.50 20.37 -56.49 -1.15 -9.65 16 13 C 0.09 4.93 4.09 71.24 0.29 5.22 16 14 C -0.54 -31.90 9.13 25.60 0.23 -31.67 16 15 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 16 C 0.02 0.95 5.46 84.65 0.46 1.41 16 17 N -0.92 -55.47 13.29 21.44 0.28 -55.18 16 18 Si 0.98 44.23 29.54 68.60 2.03 46.25 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.35 7.95 -2.39 -0.02 1.33 16 28 H 0.10 1.45 7.95 -2.39 -0.02 1.43 16 29 H 0.40 13.34 7.02 -92.71 -0.65 12.69 16 30 H 0.15 2.96 6.74 -2.91 -0.02 2.94 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.10 4.52 5.88 -2.91 -0.02 4.51 16 34 H 0.02 0.96 7.75 -2.39 -0.02 0.94 16 35 H 0.01 0.88 7.75 -2.39 -0.02 0.87 16 36 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -69.82 317.27 2.48 -67.34 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.42 Total: 21.08 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.39 Total: -34.41 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.62 Total: -79.32 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.59 Total: -11.29 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.15 Total: -9.65 kcal Total: -69.82 2.48 -67.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905105362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.135 kcal (2) G-P(sol) polarization free energy of solvation -69.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds