Wall clock time and date at job start Mon Mar 30 2020 00:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47114 * 2 1 4 4 C 1.46495 * 120.00578 * 85.28943 * 3 2 1 5 5 C 1.50708 * 109.47101 * 89.99874 * 4 3 2 6 6 H 1.07996 * 119.99464 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00160 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46622 * 90.00051 * 9 7 5 11 11 H 1.48494 * 109.47578 * 210.00190 * 9 7 5 12 12 H 1.48500 * 109.47225 * 330.00642 * 9 7 5 13 13 C 1.34782 * 119.99702 * 265.29042 * 3 2 1 14 14 O 1.21588 * 120.00226 * 5.31037 * 13 3 2 15 15 C 1.47541 * 119.99955 * 185.30855 * 13 3 2 16 16 C 1.39759 * 120.17884 * 56.01706 * 15 13 3 17 17 C 1.37759 * 119.94995 * 179.97438 * 16 15 13 18 18 C 1.38561 * 120.31962 * 359.97438 * 17 16 15 19 19 C 1.38210 * 120.36514 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.97887 * 180.02562 * 19 18 17 21 21 C 1.38926 * 120.04028 * 359.73839 * 19 18 17 22 22 O 1.35710 * 120.15444 * 180.27829 * 21 19 18 23 23 H 1.09004 * 109.47321 * 60.00518 * 1 2 3 24 24 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47105 * 300.00248 * 1 2 3 26 26 H 1.09004 * 109.47321 * 119.99482 * 2 1 3 27 27 H 1.08998 * 109.47618 * 239.99719 * 2 1 3 28 28 H 1.08996 * 109.47842 * 210.00283 * 4 3 2 29 29 H 1.09005 * 109.46915 * 330.00670 * 4 3 2 30 30 H 0.97002 * 119.99718 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.02557 * 359.95637 * 16 15 13 32 32 H 1.08001 * 119.83842 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.81666 * 180.02562 * 18 17 16 34 34 H 0.96708 * 113.99866 * 270.21187 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1642 2.1066 1.2643 5 6 3.5494 1.8833 1.8146 6 1 4.2508 1.2634 1.2760 7 6 3.9210 2.4705 3.0054 8 7 3.0666 3.2249 3.6614 9 14 5.6377 2.1931 3.6878 10 1 6.5513 3.2437 3.1713 11 1 5.5973 2.2577 5.1708 12 1 6.1292 0.8576 3.2637 13 6 2.3332 1.9846 -1.1633 14 8 2.1217 1.4187 -2.2185 15 6 2.9348 3.3318 -1.1564 16 6 4.1120 3.5719 -0.4426 17 6 4.6699 4.8315 -0.4398 18 6 4.0697 5.8639 -1.1425 19 6 2.9053 5.6411 -1.8529 20 9 2.3269 6.6532 -2.5358 21 6 2.3324 4.3755 -1.8701 22 8 1.1922 4.1528 -2.5714 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 2.0090 3.1717 1.0923 29 1 1.4263 1.7427 1.9793 30 1 3.3282 3.6383 4.4990 31 1 4.5839 2.7707 0.1067 32 1 5.5795 5.0151 0.1128 33 1 4.5143 6.8481 -1.1351 34 1 0.3827 4.2986 -2.0628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:00 Heat of formation + Delta-G solvation = -115.410834 kcal Electronic energy + Delta-G solvation = -20835.662273 eV Core-core repulsion = 17454.660605 eV Total energy + Delta-G solvation = -3381.001669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.92481 -41.46568 -39.57585 -37.84265 -36.91664 -34.72352 -32.81843 -31.05924 -30.69024 -28.97983 -25.59406 -25.02205 -23.64207 -23.39179 -20.62541 -19.52465 -18.83469 -18.28226 -17.84516 -17.50918 -16.96151 -16.83605 -16.26227 -16.18123 -15.67545 -15.27302 -14.97454 -14.67003 -14.39952 -14.16152 -13.66059 -13.42350 -13.31130 -13.12647 -12.95335 -12.67767 -12.66108 -12.54028 -12.16018 -11.85966 -11.82343 -11.60869 -10.85819 -10.55283 -9.91481 -9.61750 -9.51660 -8.16324 -6.28617 -0.14510 0.10551 1.45919 1.50590 1.57688 1.65999 2.17901 2.44180 2.55831 2.93147 3.15240 3.28183 3.59561 3.98127 4.07179 4.21833 4.32799 4.38542 4.53477 4.60137 4.79589 4.84526 4.96661 5.03406 5.06837 5.16979 5.25743 5.31425 5.40853 5.68049 5.75869 5.82905 6.06663 6.48908 6.56483 6.79996 7.21425 7.40972 8.89656 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.009174 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.966250 B = 3051.399712 C = 4414.006978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.590 5.590 4 C 0.254 3.746 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.915 5.915 9 Si 0.946 3.054 10 H -0.262 1.262 11 H -0.289 1.289 12 H -0.272 1.272 13 C 0.560 3.440 14 O -0.581 6.581 15 C -0.142 4.142 16 C -0.059 4.059 17 C -0.105 4.105 18 C -0.109 4.109 19 C 0.045 3.955 20 F -0.137 7.137 21 C 0.100 3.900 22 O -0.492 6.492 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.021 0.979 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 2.843 -3.978 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.320 5.320 4 C 0.133 3.867 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.348 3.652 14 O -0.463 6.463 15 C -0.146 4.146 16 C -0.078 4.078 17 C -0.123 4.123 18 C -0.127 4.127 19 C 0.026 3.974 20 F -0.116 7.116 21 C 0.053 3.947 22 O -0.303 6.303 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.871 2.532 -4.804 5.500 hybrid contribution 0.046 0.127 0.912 0.922 sum 0.917 2.659 -3.891 4.802 Atomic orbital electron populations 1.22011 0.94728 1.03139 1.01221 1.21480 0.95329 0.82052 1.02632 1.48256 1.62158 1.14461 1.07115 1.19110 0.96700 0.91416 0.79474 1.21526 0.98485 1.30976 1.06594 0.92096 1.25525 1.00521 0.94389 0.96484 1.70014 1.36583 1.32214 1.16518 0.85727 0.80616 0.79109 0.77407 1.18722 1.21482 1.19632 1.18242 0.77717 0.85768 0.83472 1.90689 1.56556 1.67089 1.31972 1.20125 0.99576 0.93865 1.01022 1.21931 0.93348 0.99789 0.92683 1.21272 1.01305 0.91128 0.98592 1.21519 0.93087 1.02237 0.95897 1.17934 0.96619 0.83516 0.99363 1.91461 1.84217 1.57968 1.77944 1.18448 0.90662 0.90718 0.94879 1.84777 1.14739 1.91186 1.39641 0.93858 0.89265 0.92852 0.89870 0.91137 0.96077 0.95881 0.92360 0.83280 0.81863 0.80848 0.73853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.11 3.84 6.14 86.38 0.53 4.37 16 3 N -0.59 -24.57 2.46 -829.91 -2.04 -26.61 16 4 C 0.25 11.53 4.75 85.64 0.41 11.94 16 5 C -0.54 -25.28 6.48 25.60 0.17 -25.11 16 6 H 0.06 2.87 7.19 -2.91 -0.02 2.85 16 7 C 0.03 1.54 5.46 84.65 0.46 2.00 16 8 N -0.91 -46.94 13.29 21.45 0.28 -46.65 16 9 Si 0.95 37.81 29.54 68.60 2.03 39.84 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.56 24.40 6.76 86.70 0.59 24.98 16 14 O -0.58 -27.93 16.38 -2.56 -0.04 -27.97 16 15 C -0.14 -5.71 4.43 -20.02 -0.09 -5.80 16 16 C -0.06 -2.20 7.88 22.52 0.18 -2.02 16 17 C -0.11 -3.15 10.02 22.23 0.22 -2.93 16 18 C -0.11 -3.01 10.01 22.34 0.22 -2.78 16 19 C 0.05 1.48 7.30 22.43 0.16 1.65 16 20 F -0.14 -4.35 17.11 44.97 0.77 -3.58 16 21 C 0.10 3.71 6.71 22.88 0.15 3.86 16 22 O -0.49 -17.68 12.61 -88.87 -1.12 -18.80 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 27 H 0.07 2.56 7.36 -2.39 -0.02 2.54 16 28 H 0.02 1.03 6.77 -2.39 -0.02 1.01 16 29 H 0.02 1.11 8.07 -2.38 -0.02 1.10 16 30 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.15 5.94 5.19 -2.91 -0.02 5.92 16 32 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.40 10.96 9.06 -74.05 -0.67 10.28 16 Total: -1.00 -60.52 299.50 4.09 -56.43 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.47 Total: 21.09 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 3.74 Total: 6.25 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.75 Total: -73.26 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.16 Total: -46.77 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -60.52 4.09 -56.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.976 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds