Wall clock time and date at job start Mon Mar 30 2020 01:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35742 * 116.99788 * 2 1 4 4 C 1.39278 * 120.84683 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.08994 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.82756 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.85817 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58440 * 180.02562 * 7 6 5 9 9 S 1.81404 * 109.47098 * 90.00156 * 8 7 6 10 10 C 1.81397 * 103.00143 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47527 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47431 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47166 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00391 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99888 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00302 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47077 * 89.99764 * 17 15 13 19 19 H 1.48505 * 109.46982 * 209.99728 * 17 15 13 20 20 H 1.48499 * 109.47080 * 329.99893 * 17 15 13 21 21 C 1.37986 * 120.82785 * 0.27722 * 7 6 5 22 22 H 1.09001 * 109.46863 * 300.00265 * 1 2 3 23 23 H 1.08997 * 109.46830 * 60.00449 * 1 2 3 24 24 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 25 25 H 1.08005 * 120.45818 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.58328 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47060 * 210.00105 * 8 7 6 28 28 H 1.09001 * 109.47380 * 330.00193 * 8 7 6 29 29 H 1.09007 * 109.46846 * 299.99983 * 10 9 8 30 30 H 1.09007 * 109.47453 * 59.99610 * 10 9 8 31 31 H 1.08996 * 109.46730 * 300.00157 * 11 10 9 32 32 H 1.08998 * 109.46901 * 59.99649 * 11 10 9 33 33 H 1.08997 * 109.47150 * 300.00312 * 12 11 10 34 34 H 1.08998 * 109.47082 * 60.00106 * 12 11 10 35 35 H 0.97001 * 120.00368 * 179.97438 * 16 15 13 36 36 H 1.07992 * 120.46215 * 179.71135 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0000 6 7 3.2865 3.6458 -0.0005 7 6 4.0231 2.5510 -0.0001 8 6 5.5257 2.6652 -0.0001 9 16 6.1287 2.7118 1.7102 10 6 7.9260 2.8475 1.5057 11 6 8.5934 2.8994 2.8815 12 6 10.1093 3.0132 2.7090 13 6 10.7665 3.0649 4.0641 14 1 10.1634 3.0206 4.9589 15 6 12.1379 3.1689 4.1616 16 7 12.8725 3.2223 3.0721 17 14 12.9527 3.2323 5.8414 18 1 13.2743 1.8530 6.2880 19 1 14.2031 4.0288 5.7554 20 1 12.0285 3.8653 6.8163 21 6 3.4347 1.3029 -0.0047 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2244 2.3566 0.0014 26 1 1.4007 4.5173 0.0008 27 1 5.9555 1.8051 -0.5136 28 1 5.8206 3.5800 -0.5143 29 1 8.2953 1.9825 0.9547 30 1 8.1612 3.7575 0.9536 31 1 8.2240 3.7645 3.4320 32 1 8.3582 1.9896 3.4339 33 1 10.4783 2.1478 2.1586 34 1 10.3448 3.9227 2.1565 35 1 13.8373 3.2958 3.1407 36 1 4.0432 0.4107 -0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116611085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:43 Heat of formation + Delta-G solvation = -22.957340 kcal Electronic energy + Delta-G solvation = -16574.011796 eV Core-core repulsion = 13763.232388 eV Total energy + Delta-G solvation = -2810.779408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89835 -38.63894 -34.42694 -33.05159 -31.99932 -31.79560 -28.68893 -27.56918 -27.07458 -23.76688 -23.41209 -22.02715 -20.21771 -18.36400 -17.33751 -16.45393 -16.28165 -15.99156 -15.73673 -15.24176 -14.66742 -14.56862 -14.46795 -14.13412 -13.70439 -13.09465 -13.02354 -12.63739 -12.42355 -11.99247 -11.74336 -11.67536 -11.49446 -10.88975 -10.85703 -10.53175 -9.91082 -9.76769 -9.75385 -9.30784 -9.18633 -9.17032 -9.04203 -8.34832 -7.39209 -5.99893 -4.02211 0.65362 1.08065 1.99634 2.71923 2.87395 3.33680 3.39654 3.43868 3.64221 3.98674 4.30907 4.47246 4.53807 4.65780 4.68363 4.82376 4.91496 5.01302 5.12279 5.36087 5.40817 5.50631 5.54392 5.64463 5.67100 5.77131 6.15674 6.21671 6.58464 6.74660 6.83512 7.04579 7.65734 7.78103 7.80360 7.99281 8.41287 9.04263 9.61883 11.11468 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.046347 B = 0.002673 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.991265 B =10471.716457 C =10659.051405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.168 3.832 4 C -0.265 4.265 5 C 0.140 3.860 6 N -0.494 5.494 7 C 0.185 3.815 8 C -0.046 4.046 9 S -0.254 6.254 10 C -0.075 4.075 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.187 4.187 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.139 0.861 26 H 0.160 0.840 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.407 -4.091 -9.614 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.115 3.885 4 C -0.287 4.287 5 C -0.017 4.017 6 N -0.207 5.207 7 C 0.048 3.952 8 C -0.194 4.194 9 S -0.026 6.026 10 C -0.223 4.223 11 C -0.134 4.134 12 C -0.011 4.011 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.210 4.210 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.156 0.844 26 H 0.177 0.823 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.320 -3.542 -8.751 27.023 hybrid contribution 0.467 -0.621 -0.271 0.823 sum -24.854 -4.163 -9.023 26.766 Atomic orbital electron populations 1.23143 0.77749 1.04403 1.01657 1.86083 1.21906 1.26304 1.87836 1.19267 0.92272 0.84602 0.92402 1.22214 1.01487 0.93319 1.11662 1.22551 0.89860 0.97060 0.92269 1.67521 1.06933 1.31675 1.14555 1.20229 0.94567 0.87724 0.92682 1.22156 0.91855 1.06502 0.98897 1.87099 1.09256 1.97606 1.08606 1.23682 0.89887 1.04479 1.04237 1.21464 0.98637 1.01607 0.91669 1.19103 0.87272 0.97374 0.97385 1.21226 0.91723 1.50269 0.92616 0.92543 1.25023 0.97521 0.95293 0.96629 1.69960 1.05498 1.50613 1.27473 0.86571 0.78891 0.78035 0.84392 1.20639 1.21218 1.19821 1.21262 0.92077 0.99726 1.07925 0.92260 0.92364 0.87819 0.84354 0.82275 0.88397 0.87992 0.90390 0.90319 0.92329 0.92386 0.96403 0.96372 0.92977 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.84 101.05 0.99 1.12 16 2 O -0.31 -2.97 10.51 -18.93 -0.20 -3.17 16 3 C 0.17 1.78 6.74 -38.82 -0.26 1.52 16 4 C -0.27 -2.37 9.11 -39.30 -0.36 -2.73 16 5 C 0.14 1.41 11.17 -17.59 -0.20 1.22 16 6 N -0.49 -6.49 10.27 -9.55 -0.10 -6.58 16 7 C 0.19 2.39 6.04 -82.63 -0.50 1.90 16 8 C -0.05 -0.59 6.23 36.01 0.22 -0.37 16 9 S -0.25 -4.13 21.72 -107.50 -2.33 -6.46 16 10 C -0.07 -1.31 5.94 37.16 0.22 -1.09 16 11 C -0.09 -2.00 5.16 -26.74 -0.14 -2.14 16 12 C 0.03 0.71 4.97 -27.89 -0.14 0.58 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.19 -2.21 9.70 -39.30 -0.38 -2.59 16 22 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 23 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 24 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.14 0.80 6.47 -52.48 -0.34 0.46 16 26 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 27 H 0.10 1.07 8.07 -51.92 -0.42 0.65 16 28 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 29 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -32.58 323.38 -8.32 -40.90 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.33 Total: -3.86 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.94 Total: -16.24 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.64 Total: -32.88 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.20 Total: -3.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.33 Total: -6.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.58 -8.32 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116611085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.938 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds